Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004801

Physical Location & Seq

Genomic Coordinates Reverse (-)

15347272 .. 15348018

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGATGATGGGTACCCCCTTACGATGGGTACATGCATGCGTTACTGTGACTAATGTTGTGGTTGGATGTGGTGATGGCAATGCTCTTGTTTTTGACATGTACAGCTCCCAATGTTCTCAAATTCGTAGAATGAATAGCAATTACGGGCCGCTGACATGTTTAGAGTTGAGCAATGATGACAGTCGTTTGTTGATTCTCGCTGGTAGTCGTTCTAATATCACAATGTCGTCTGGACTTGTAGGCGATCCTGTAGCAAGTTTAAGCACGAATTATTCGGCAAGCTACGTAAGGACTTTGTGTTACAATCCTAGCGGCGATGACCATTGGATGGTGTTTGGTGGATCTAATGGTGGATATGTGCATTGTTGGGACCTCAGAACAAGGAAGAGTTTATGGAACACAAAAGTGAACCGGTATGCTGTGTTTTCAGTGCAGCAGCTGAGGAATGCAGCTGCGTCGGATTTGGTTGTGGGTGGAGCGGATGGTGTGCTTCGTGTAGTGGATCACAACACAGGAGAAGTGATTTCGAGAATTGTTTTGGACACTGGCTACTGTGCATTGCCAAGTAGCACTAGTAGTACTACTCGTGCACCGGTTCAGAGATTGATCAGAGGAAGAAGGCTGTCAGCGGATGCCGTTGTTGATGACGACATTCGTCCACCTCCTATTACCAGCTTGGCGGTTGGGATGAAGAAGGTGATCACCACACACGATACAGACTACGTCAGAACCTGGAAATTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

F-box F-box-like WD40

Protein Analysis

249

Amino Acids

27.08

Weight (kDa)

8.48

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52030 AT3G52030
fragaria_vesca	FvH4_2g17910 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770
malus_domestica	MD07G1016900.v1.1 MD07G1023200.v1.1
prunus_persica	Prupe.2G024000_v2.0.a1
pyrus_communis	pycom07g01760
rosa_chinensis	RchiOBHm_Chr1g0318361
rosa_laevigata	RLG00000030542
rosa_multiflora	Rmu_sc0002662.1_g000010 Rmu_sc0003936.1_g000037
rosa_roxburghii	Rroxscaffold_4G00329280
rosa_rugosa	Rorug01G0020800 Rorug01G0020900
rosa_samantha	Rh1AG032900 Rh1BG028800 Rh1CG031300 Rh1DG038200
rosa_wichuraiana	Rw1G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	11
AccB1I	GGYRCC	1 cut(s)	11
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccBSI	CCGCTC	1 cut(s)	479
AciI	CCGC	5 cut(s)	149, 312, 479, 629, 680
AclWI	GGATC	3 cut(s)	239, 349, 510
AcsI	RAATTY	2 cut(s)	120, 737
AfaI	GTAC	4 cut(s)	13, 30, 101, 580
AfiI	CCNNNNNNNGG	2 cut(s)	24, 328
AflIII	ACRYGT	2 cut(s)	96, 155
AgeI	ACCGGT	2 cut(s)	411, 592
AhlI	ACTAGT	1 cut(s)	572
AjnI	CCWGG	1 cut(s)	731
AleI	CACNNNNGTG	1 cut(s)	404
AluBI	AGCT	5 cut(s)	105, 282, 439, 452, 675
AluI	AGCT	5 cut(s)	105, 282, 439, 452, 675
Alw21I	GWGCWC	1 cut(s)	592
Alw44I	GTGCAC	1 cut(s)	588
AlwI	GGATC	3 cut(s)	239, 349, 510
AlwNI	CAGNNNCTG	2 cut(s)	439, 732
AoxI	GGCC	1 cut(s)	146
ApaLI	GTGCAC	1 cut(s)	588
ApeKI	GCWGC	4 cut(s)	433, 436, 449, 452
ApoI	RAATTY	2 cut(s)	120, 737
AsiGI	ACCGGT	2 cut(s)	411, 592
Asp718I	GGTACC	1 cut(s)	11
AspS9I	GGNCC	2 cut(s)	146, 370
AsuHPI	GGTGA	3 cut(s)	83, 694, 709
AvaII	GGWCC	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	592
BanI	GGYRCC	1 cut(s)	11
BauI	CACGAG	1 cut(s)	585
Bbv12I	GWGCWC	1 cut(s)	592
BbvCI	CCTCAGC	1 cut(s)	440
BbvI	GCAGC	4 cut(s)	439, 445, 448, 461
BccI	CCATC	4 cut(s)	18, 68, 322, 476
BceAI	ACGGC	1 cut(s)	620
BcgI	CGANNNNNNTGC	2 cut(s)	438, 472
BciT130I	CCWGG	1 cut(s)	733
BclI	TGATCA	2 cut(s)	606, 699
BcuI	ACTAGT	1 cut(s)	572
BfaI	CTAG	2 cut(s)	309, 573
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	6 cut(s)	149, 313, 434, 437, 450, 453
BlsI	GCNGC	6 cut(s)	150, 314, 435, 438, 451, 454
BmcAI	AGTACT	1 cut(s)	580
Bme1390I	CCNGG	1 cut(s)	733
Bme18I	GGWCC	1 cut(s)	370
BmgT120I	GGNCC	2 cut(s)	146, 370
BmiI	GGNNCC	2 cut(s)	13, 371
BmrFI	CCNGG	1 cut(s)	733
BmsI	GCATC	1 cut(s)	622
BoxI	GACNNNNGTC	1 cut(s)	654
Bpu10I	CCTNAGC	1 cut(s)	440
BsaAI	YACGTR	1 cut(s)	286
BsaWI	WCCGGW	2 cut(s)	411, 592
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 328
Bse118I	RCCGGY	2 cut(s)	411, 592
Bse1I	ACTGG	1 cut(s)	550
Bse3DI	GCAATG	3 cut(s)	85, 178, 557
BseBI	CCWGG	1 cut(s)	733
BseGI	GGATG	5 cut(s)	71, 333, 487, 637, 693
BseLI	CCNNNNNNNGG	2 cut(s)	24, 328
BseMI	GCAATG	3 cut(s)	85, 178, 557
BseMII	CTCAG	2 cut(s)	388, 431
BseNI	ACTGG	1 cut(s)	550
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	4 cut(s)	439, 445, 448, 461
BsgI	GTGCAG	1 cut(s)	452
BshFI	GGCC	1 cut(s)	148
BshNI	GGYRCC	1 cut(s)	11
BshTI	ACCGGT	2 cut(s)	411, 592
BsiHKAI	GWGCWC	1 cut(s)	592
BsiSI	CCGG	2 cut(s)	412, 593
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	2 cut(s)	24, 328
BsmFI	GGGAC	1 cut(s)	383
BsmI	GAATGC	1 cut(s)	451
BsnI	GGCC	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	592
Bsp1407I	TGTACA	1 cut(s)	99
Bsp143I	GATC	5 cut(s)	244, 341, 502, 606, 699
BspACI	CCGC	5 cut(s)	149, 312, 479, 629, 680
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	2 cut(s)	387, 432
BspLI	GGNNCC	2 cut(s)	13, 371
BspPI	GGATC	3 cut(s)	239, 349, 510
BspT107I	GGYRCC	1 cut(s)	11
BsrBI	CCGCTC	1 cut(s)	479
BsrDI	GCAATG	3 cut(s)	85, 178, 557
BsrFI	RCCGGY	2 cut(s)	411, 592
BsrGI	TGTACA	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	550
BssAI	RCCGGY	2 cut(s)	411, 592
BssMI	GATC	5 cut(s)	244, 341, 502, 606, 699
BssSI	CACGAG	1 cut(s)	585
Bst2BI	CACGAG	1 cut(s)	585
Bst2UI	CCWGG	1 cut(s)	733
Bst4CI	ACNGT	3 cut(s)	46, 182, 554
Bst6I	CTCTTC	1 cut(s)	380
BstAUI	TGTACA	1 cut(s)	99
BstBAI	YACGTR	1 cut(s)	286
BstC8I	GCNNGC	2 cut(s)	37, 280
BstDEI	CTNAG	2 cut(s)	374, 440
BstF5I	GGATG	5 cut(s)	71, 333, 487, 637, 693
BstKTI	GATC	5 cut(s)	247, 344, 505, 609, 702
BstMBI	GATC	5 cut(s)	244, 341, 502, 606, 699
BstNI	CCWGG	1 cut(s)	733
BstNSI	RCATGY	4 cut(s)	35, 39, 100, 159
BstPAI	GACNNNNGTC	1 cut(s)	654
BstSCI	CCNGG	1 cut(s)	731
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	592
BstSNI	TACGTA	1 cut(s)	286
BstV1I	GCAGC	4 cut(s)	439, 445, 448, 461
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
BsuRI	GGCC	1 cut(s)	148
BtgZI	GCGATG	1 cut(s)	330
BtsCI	GGATG	5 cut(s)	71, 333, 487, 637, 693
BtsIMutI	CAGTG	2 cut(s)	435, 543
Cac8I	GCNNGC	2 cut(s)	37, 280
CaiI	CAGNNNCTG	2 cut(s)	439, 732
Cfr10I	RCCGGY	2 cut(s)	411, 592
Cfr13I	GGNCC	2 cut(s)	146, 370
CseI	GACGC	1 cut(s)	444
Csp6I	GTAC	4 cut(s)	12, 29, 100, 579
CspAI	ACCGGT	2 cut(s)	411, 592
CviAII	CATG	4 cut(s)	32, 36, 97, 156
CviJI	RGCY	8 cut(s)	105, 148, 282, 439, 452, 549, 622, 675
CviKI_1	RGCY	8 cut(s)	105, 148, 282, 439, 452, 549, 622, 675
CviQI	GTAC	4 cut(s)	12, 29, 100, 579
DdeI	CTNAG	2 cut(s)	374, 440
DpnI	GATC	5 cut(s)	246, 343, 504, 608, 701
DpnII	GATC	5 cut(s)	244, 341, 502, 606, 699
Eam1104I	CTCTTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	380
Eco105I	TACGTA	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	370
EcoO109I	RGGNCCY	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	731
EcoT22I	ATGCAT	1 cut(s)	37
FaeI	CATG	4 cut(s)	35, 39, 100, 159
FaiI	YATR	7 cut(s)	33, 37, 98, 157, 357, 394, 417
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	4 cut(s)	31, 35, 96, 155
FbaI	TGATCA	2 cut(s)	606, 699
Fnu4HI	GCNGC	6 cut(s)	149, 313, 434, 437, 450, 453
FokI	GGATG	5 cut(s)	78, 340, 494, 644, 700
Fsp4HI	GCNGC	6 cut(s)	149, 313, 434, 437, 450, 453
FspBI	CTAG	2 cut(s)	309, 573
GluI	GCNGC	6 cut(s)	149, 313, 434, 437, 450, 453
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	2 cut(s)	412, 593
HgaI	GACGC	1 cut(s)	444
Hin1II	CATG	4 cut(s)	35, 39, 100, 159
HinfI	GANTC	1 cut(s)	193
HpaII	CCGG	2 cut(s)	412, 593
HphI	GGTGA	3 cut(s)	83, 694, 709
Hpy166II	GTNNAC	3 cut(s)	409, 590, 659
Hpy188I	TCNGA	5 cut(s)	377, 460, 600, 611, 728
Hpy188III	TCNNGA	2 cut(s)	231, 528
Hpy8I	GTNNAC	3 cut(s)	409, 590, 659
Hpy99I	CGWCG	1 cut(s)	460
HpyAV	CCTTC	2 cut(s)	612, 688
HpyCH4III	ACNGT	3 cut(s)	46, 182, 554
HpyCH4IV	ACGT	2 cut(s)	285, 723
HpyCH4V	TGCA	6 cut(s)	35, 361, 433, 449, 557, 590
HpyF3I	CTNAG	2 cut(s)	374, 440
HpySE526I	ACGT	2 cut(s)	285, 723
Hsp92II	CATG	4 cut(s)	35, 39, 100, 159
KpnI	GGTACC	1 cut(s)	15
Ksp22I	TGATCA	2 cut(s)	606, 699
Kzo9I	GATC	5 cut(s)	244, 341, 502, 606, 699
LmnI	GCTCC	2 cut(s)	110, 476
LpnPI	CCDG	9 cut(s)	186, 216, 261, 425, 498, 531, 606, 685, 718
Lsp1109I	GCAGC	4 cut(s)	439, 445, 448, 461
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	2 cut(s)	309, 573
MaeII	ACGT	2 cut(s)	285, 723
MaeIII	GTNAC	3 cut(s)	40, 46, 299
MalI	GATC	5 cut(s)	246, 343, 504, 608, 701
MbiI	CCGCTC	1 cut(s)	479
MboI	GATC	5 cut(s)	244, 341, 502, 606, 699
MboII	GAAGA	3 cut(s)	397, 627, 703
MflI	RGATCY	1 cut(s)	341
MhlI	GDGCHC	1 cut(s)	592
MluCI	AATT	5 cut(s)	120, 139, 268, 531, 737
MmeI	TCCRAC	2 cut(s)	43, 438
MnlI	CCTC	4 cut(s)	383, 435, 605, 672
Mph1103I	ATGCAT	1 cut(s)	37
MseI	TTAA	1 cut(s)	260
MslI	CAYNNNNRTG	1 cut(s)	404
MspA1I	CMGCKG	4 cut(s)	151, 439, 452, 629
MspI	CCGG	2 cut(s)	412, 593
MspR9I	CCNGG	1 cut(s)	733
Mva1269I	GAATGC	1 cut(s)	451
MvaI	CCWGG	1 cut(s)	733
NdeII	GATC	5 cut(s)	244, 341, 502, 606, 699
NlaIII	CATG	4 cut(s)	35, 39, 100, 159
NlaIV	GGNNCC	2 cut(s)	13, 371
NmuCI	GTSAC	1 cut(s)	46
NsiI	ATGCAT	1 cut(s)	37
NspI	RCATGY	4 cut(s)	35, 39, 100, 159
OliI	CACNNNNGTG	1 cut(s)	404
PaeI	GCATGC	1 cut(s)	39
PciI	ACATGT	2 cut(s)	96, 155
PctI	GAATGC	1 cut(s)	451
PfeI	GAWTC	1 cut(s)	193
PflFI	GACNNNGTC	1 cut(s)	722
PflMI	CCANNNNNTGG	1 cut(s)	328
PinAI	ACCGGT	2 cut(s)	411, 592
PkrI	GCNGC	6 cut(s)	150, 314, 435, 438, 451, 454
Ppu21I	YACGTR	1 cut(s)	286
PpuMI	RGGWCCY	1 cut(s)	370
PscI	ACATGT	2 cut(s)	96, 155
PshAI	GACNNNNGTC	1 cut(s)	654
Psp5II	RGGWCCY	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	731
PspGI	CCWGG	1 cut(s)	731
PspN4I	GGNNCC	2 cut(s)	13, 371
PspPI	GGNCC	2 cut(s)	146, 370
PspPPI	RGGWCCY	1 cut(s)	370
PstNI	CAGNNNCTG	2 cut(s)	439, 732
PsuI	RGATCY	1 cut(s)	341
PsyI	GACNNNGTC	1 cut(s)	722
PvuII	CAGCTG	2 cut(s)	439, 452
RsaI	GTAC	4 cut(s)	13, 30, 101, 580
RsaNI	GTAC	4 cut(s)	12, 29, 100, 579
RseI	CAYNNNNRTG	1 cut(s)	404
SaqAI	TTAA	1 cut(s)	260
SatI	GCNGC	6 cut(s)	149, 313, 434, 437, 450, 453
Sau3AI	GATC	5 cut(s)	244, 341, 502, 606, 699
Sau96I	GGNCC	2 cut(s)	146, 370
ScaI	AGTACT	1 cut(s)	580
ScrFI	CCNGG	1 cut(s)	733
SduI	GDGCHC	1 cut(s)	592
SfaNI	GCATC	1 cut(s)	622
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	404
SnaBI	TACGTA	1 cut(s)	286
SpeI	ACTAGT	1 cut(s)	572
SphI	GCATGC	1 cut(s)	39
Sse9I	AATT	5 cut(s)	120, 139, 268, 531, 737
SsiI	CCGC	5 cut(s)	149, 312, 479, 629, 680
SspMI	CTAG	2 cut(s)	309, 573
StyD4I	CCNGG	1 cut(s)	731
TaaI	ACNGT	3 cut(s)	46, 182, 554
TaiI	ACGT	2 cut(s)	288, 726
TaqI	TCGA	1 cut(s)	527
TasI	AATT	5 cut(s)	120, 139, 268, 531, 737
TatI	WGTACW	2 cut(s)	99, 578
TauI	GCSGC	2 cut(s)	151, 315
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TscAI	CASTG	2 cut(s)	435, 550
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	4 cut(s)	433, 436, 449, 452
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	146, 704
TspRI	CASTG	2 cut(s)	435, 550
Tth111I	GACNNNGTC	1 cut(s)	722
Van91I	CCANNNNNTGG	1 cut(s)	328
VneI	GTGCAC	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	370
XapI	RAATTY	2 cut(s)	120, 737
XceI	RCATGY	4 cut(s)	35, 39, 100, 159
XspI	CTAG	2 cut(s)	309, 573
ZrmI	AGTACT	1 cut(s)	580
Zsp2I	ATGCAT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.