Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004801

Physical Location & Seq

Genomic Coordinates Forward (+)

3393281 .. 3394384

Gene Structure 1104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0020800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGGAACCAAAAGAAGCTGCTACTCTTTGGATGAAGATCTCATAGTAGAAATTCTGTCCAGATTACCTGTGAAGTCCCTGATGAGGTTTAGCTGCGTGTCAAAAGAGTGGTATTCTCTCACCAGAAACTCTTACTTGATCAATATTCACCTTCGTCGCGTCAATTCGAATCTCTCTCTTCTCACTCATGAATATGATCGTGATAAGCGGTTCAATACTGATCCAAAGTTTGGAATCTCAATGCTTGGAGATGAAGCAGCAGACCTTGTGAGTATAGATTTACCTATCTTGTCGAACTCTTTCAAGTTTACAAACATTGTAGGATCTAGTAATGGCTTAGAATGTCTTGTAGCTAGGGTGAAAAAGAAAAGACGAAAGTTTATGGATACTGCAGAAATAATAATATGGAACCCAGTAACAAAACAGTTTCGAAGTCTTCCTAAACCTGTACTTGAGGAAAATTTCCATCGTTTTGATCGTCCTACTCTTGGTTTTGGATTTAGTGATGATAACACCGATGATTACAAATTAGTTAATATTTTCCATAAGCAAGTACAAGTCTTCACCCGAAGTACAAATTCTTGGAGAGAAGTCGAAGGCAAAGGGTATCCATCATGTAAATATTGTTATGGAGATTTTTGGGTTTCGTTGAAGGGAGTGCTGTATTGGTCGGCATGGACCGACAGATCCAAGGGCCGTTTTGTTTTGTCTTTCAATCTGCGTGATGAGGTATTTAATGTCATACAATTACCATCCGGGAATTATTGGTACTCTCGACTGCTTCTGTGGAAAGACTCACTAGCAATCGTGAGCAAGAATCAGGTTTGGGCGGCGAAGACCGATGACTCTGATGAGAGTGGTGACAATAACAAAATCGTTTGGACCAAACAATTTAGCATTGATTTTTCAATATCACGATGTGAAGAGGTCTTTGGAATTTGGAAGGATCAAGTACTAATTCGAAGACAGTTAAGATATGATAGGCTTTATTTGTATGACCCTATAACCAAGGAAAGGGGAAAGTTGCTTCGGAAACCTGATGAAAAGAACTATTATGGTTATGGTCAACTAGTCAATTATGTGGAGAGCCTAGCTTTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

F-box F-box-like WD40

Protein Analysis

367

Amino Acids

43.08

Weight (kDa)

9.13

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	9 - 46	5.5e-10	F-box domain
F-box-like	PF12937	13 - 46	2e-06	F-box-like
FBA_3	PF08268	99 - 273	2.8e-20	F-box associated beta propeller domain
FBA_1	PF07734	129 - 364	6e-18	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52030 AT3G52030
fragaria_vesca	FvH4_2g17910 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770 FvH4_7g01770
malus_domestica	MD07G1016900.v1.1 MD07G1023200.v1.1
prunus_persica	Prupe.2G024000_v2.0.a1
pyrus_communis	pycom07g01760
rosa_chinensis	RchiOBHm_Chr1g0318361
rosa_laevigata	RLG00000030542
rosa_multiflora	Rmu_sc0002662.1_g000010 Rmu_sc0003936.1_g000037
rosa_roxburghii	Rroxscaffold_4G00329280
rosa_rugosa	Rorug01G0020800 Rorug01G0020900
rosa_samantha	Rh1AG032900 Rh1BG028800 Rh1CG031300 Rh1DG038200
rosa_wichuraiana	Rw1G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	230
AccII	CGCG	1 cut(s)	159
AciI	CCGC	2 cut(s)	208, 830
AclWI	GGATC	4 cut(s)	215, 331, 681, 954
AcsI	RAATTY	4 cut(s)	51, 460, 577, 936
AdeI	CACNNNGTG	1 cut(s)	920
AfaI	GTAC	5 cut(s)	450, 555, 574, 770, 954
AfiI	CCNNNNNNNGG	4 cut(s)	84, 230, 488, 1014
AgsI	TTSAA	5 cut(s)	214, 304, 652, 715, 909
AhlI	ACTAGT	1 cut(s)	1069
AjuI	GAANNNNNNNTTGG	2 cut(s)	915, 947
AluBI	AGCT	4 cut(s)	18, 93, 353, 1094
AluI	AGCT	4 cut(s)	18, 93, 353, 1094
AlwI	GGATC	4 cut(s)	215, 331, 681, 954
AoxI	GGCC	1 cut(s)	694
ApeKI	GCWGC	3 cut(s)	18, 93, 257
ApoI	RAATTY	4 cut(s)	51, 460, 577, 936
Asp700I	GAANNNNTTC	1 cut(s)	299
AspS9I	GGNCC	3 cut(s)	678, 694, 882
AsuC2I	CCSGG	1 cut(s)	757
AsuHPI	GGTGA	5 cut(s)	112, 140, 370, 556, 872
AsuII	TTCGAA	3 cut(s)	167, 430, 961
AvaII	GGWCC	2 cut(s)	678, 882
BbsI	GAAGAC	4 cut(s)	428, 553, 842, 970
BbvI	GCAGC	3 cut(s)	5, 80, 269
BccI	CCATC	3 cut(s)	474, 619, 760
BceAI	ACGGC	1 cut(s)	681
BciVI	GTATCC	2 cut(s)	379, 618
BclI	TGATCA	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	757
BcuI	ACTAGT	1 cut(s)	1069
BfaI	CTAG	5 cut(s)	327, 354, 800, 1070, 1091
BfmI	CTRYAG	1 cut(s)	390
BfuI	GTATCC	2 cut(s)	379, 618
BglII	AGATCT	1 cut(s)	37
BisI	GCNGC	4 cut(s)	19, 94, 258, 831
BlsI	GCNGC	4 cut(s)	20, 95, 259, 832
BmcAI	AGTACT	1 cut(s)	954
Bme1390I	CCNGG	1 cut(s)	757
Bme18I	GGWCC	2 cut(s)	678, 882
BmgT120I	GGNCC	3 cut(s)	678, 694, 882
BmiI	GGNNCC	2 cut(s)	7, 410
BmrFI	CCNGG	1 cut(s)	757
BmrI	ACTGGG	1 cut(s)	407
BmuI	ACTGGG	1 cut(s)	407
BpiI	GAAGAC	4 cut(s)	428, 553, 842, 970
Bpu14I	TTCGAA	3 cut(s)	167, 430, 961
BpuEI	CTTGAG	1 cut(s)	473
BpuMI	CCSGG	1 cut(s)	757
BsaBI	GATNNNNATC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	690, 1008
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 230, 488, 1014
Bse1I	ACTGG	1 cut(s)	413
Bse8I	GATNNNNATC	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	690, 1008
BseGI	GGATG	2 cut(s)	37, 752
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	4 cut(s)	84, 230, 488, 1014
BseNI	ACTGG	1 cut(s)	413
BseXI	GCAGC	3 cut(s)	5, 80, 269
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	696
BsiSI	CCGG	1 cut(s)	756
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	4 cut(s)	84, 230, 488, 1014
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	696
Bsp119I	TTCGAA	3 cut(s)	167, 430, 961
Bsp143I	GATC	8 cut(s)	37, 138, 196, 220, 323, 475, 686, 946
BspACI	CCGC	2 cut(s)	208, 830
BspANI	GGCC	1 cut(s)	696
BspFNI	CGCG	1 cut(s)	159
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	7, 410
BspMAI	CTGCAG	1 cut(s)	394
BspPI	GGATC	4 cut(s)	215, 331, 681, 954
BspT104I	TTCGAA	3 cut(s)	167, 430, 961
BsrI	ACTGG	1 cut(s)	413
BssECI	CCNNGG	2 cut(s)	690, 1008
BssMI	GATC	8 cut(s)	37, 138, 196, 220, 323, 475, 686, 946
BssT1I	CCWWGG	2 cut(s)	690, 1008
Bst4CI	ACNGT	2 cut(s)	426, 969
Bst6I	CTCTTC	2 cut(s)	183, 918
BstBI	TTCGAA	3 cut(s)	167, 430, 961
BstDEI	CTNAG	1 cut(s)	337
BstF5I	GGATG	2 cut(s)	37, 752
BstFNI	CGCG	1 cut(s)	159
BstKTI	GATC	8 cut(s)	40, 141, 199, 223, 326, 478, 689, 949
BstMBI	GATC	8 cut(s)	37, 138, 196, 220, 323, 475, 686, 946
BstSCI	CCNGG	1 cut(s)	755
BstSFI	CTRYAG	1 cut(s)	390
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	3 cut(s)	5, 80, 269
BstV2I	GAAGAC	4 cut(s)	428, 553, 842, 970
BstX2I	RGATCY	3 cut(s)	37, 323, 686
BstYI	RGATCY	3 cut(s)	37, 323, 686
BsuI	GTATCC	2 cut(s)	379, 618
BsuRI	GGCC	1 cut(s)	696
BtsCI	GGATG	2 cut(s)	37, 752
CciI	TCATGA	1 cut(s)	187
Cfr13I	GGNCC	3 cut(s)	678, 694, 882
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	5 cut(s)	449, 554, 573, 769, 953
CviAII	CATG	3 cut(s)	188, 615, 675
CviJI	RGCY	8 cut(s)	18, 93, 336, 353, 696, 985, 1089, 1094
CviKI_1	RGCY	8 cut(s)	18, 93, 336, 353, 696, 985, 1089, 1094
CviQI	GTAC	5 cut(s)	449, 554, 573, 769, 953
DdeI	CTNAG	1 cut(s)	337
DpnI	GATC	8 cut(s)	39, 140, 198, 222, 325, 477, 688, 948
DpnII	GATC	8 cut(s)	37, 138, 196, 220, 323, 475, 686, 946
DraIII	CACNNNGTG	1 cut(s)	920
Eam1104I	CTCTTC	2 cut(s)	183, 918
EarI	CTCTTC	2 cut(s)	183, 918
Eco130I	CCWWGG	2 cut(s)	690, 1008
Eco47I	GGWCC	2 cut(s)	678, 882
EcoT14I	CCWWGG	2 cut(s)	690, 1008
ErhI	CCWWGG	2 cut(s)	690, 1008
FaeI	CATG	3 cut(s)	191, 618, 678
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	3 cut(s)	187, 614, 674
FbaI	TGATCA	1 cut(s)	138
Fnu4HI	GCNGC	4 cut(s)	19, 94, 258, 831
FokI	GGATG	2 cut(s)	44, 739
Fsp4HI	GCNGC	4 cut(s)	19, 94, 258, 831
FspBI	CTAG	5 cut(s)	327, 354, 800, 1070, 1091
GluI	GCNGC	4 cut(s)	19, 94, 258, 831
HaeIII	GGCC	1 cut(s)	696
HapII	CCGG	1 cut(s)	756
HgaI	GACGC	1 cut(s)	148
Hin1II	CATG	3 cut(s)	191, 618, 678
HincII	GTYRAC	1 cut(s)	1067
HindII	GTYRAC	1 cut(s)	1067
HinfI	GANTC	5 cut(s)	169, 234, 794, 817, 845
HpaII	CCGG	1 cut(s)	756
HphI	GGTGA	5 cut(s)	112, 140, 370, 556, 872
Hpy166II	GTNNAC	2 cut(s)	309, 1067
Hpy188I	TCNGA	2 cut(s)	850, 1032
Hpy188III	TCNNGA	6 cut(s)	60, 188, 200, 774, 808, 915
Hpy8I	GTNNAC	2 cut(s)	309, 1067
Hpy99I	CGWCG	1 cut(s)	159
HpyAV	CCTTC	4 cut(s)	161, 590, 646, 937
HpyCH4III	ACNGT	2 cut(s)	426, 969
HpyCH4V	TGCA	1 cut(s)	392
HpyF3I	CTNAG	1 cut(s)	337
Hsp92II	CATG	3 cut(s)	191, 618, 678
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	8 cut(s)	37, 138, 196, 220, 323, 475, 686, 946
LpnPI	CCDG	9 cut(s)	73, 81, 92, 136, 426, 459, 769, 806, 1050
Lsp1109I	GCAGC	3 cut(s)	5, 80, 269
MaeI	CTAG	5 cut(s)	327, 354, 800, 1070, 1091
MaeIII	GTNAC	2 cut(s)	415, 860
MalI	GATC	8 cut(s)	39, 140, 198, 222, 325, 477, 688, 948
MboI	GATC	8 cut(s)	37, 138, 196, 220, 323, 475, 686, 946
MboII	GAAGA	7 cut(s)	47, 170, 428, 553, 847, 935, 975
MflI	RGATCY	3 cut(s)	37, 323, 686
MlyI	GAGTC	2 cut(s)	788, 839
MnlI	CCTC	4 cut(s)	78, 448, 721, 919
MroXI	GAANNNNTTC	1 cut(s)	299
MseI	TTAA	3 cut(s)	534, 735, 971
MslI	CAYNNNNRTG	1 cut(s)	192
MspI	CCGG	1 cut(s)	756
MspR9I	CCNGG	1 cut(s)	757
MvnI	CGCG	1 cut(s)	159
NciI	CCSGG	1 cut(s)	757
NdeII	GATC	8 cut(s)	37, 138, 196, 220, 323, 475, 686, 946
NlaIII	CATG	3 cut(s)	191, 618, 678
NlaIV	GGNNCC	2 cut(s)	7, 410
NmuCI	GTSAC	1 cut(s)	860
NspV	TTCGAA	3 cut(s)	167, 430, 961
PagI	TCATGA	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	1 cut(s)	475
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	3 cut(s)	169, 234, 817
PflMI	CCANNNNNTGG	1 cut(s)	230
PfoI	TCCNGGA	1 cut(s)	755
PkrI	GCNGC	4 cut(s)	20, 95, 259, 832
PleI	GAGTC	2 cut(s)	788, 839
PpsI	GAGTC	2 cut(s)	788, 839
PspN4I	GGNNCC	2 cut(s)	7, 410
PspPI	GGNCC	3 cut(s)	678, 694, 882
PstI	CTGCAG	1 cut(s)	394
PsuI	RGATCY	3 cut(s)	37, 323, 686
RsaI	GTAC	5 cut(s)	450, 555, 574, 770, 954
RsaNI	GTAC	5 cut(s)	449, 554, 573, 769, 953
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	3 cut(s)	534, 735, 971
SatI	GCNGC	4 cut(s)	19, 94, 258, 831
Sau3AI	GATC	8 cut(s)	37, 138, 196, 220, 323, 475, 686, 946
Sau96I	GGNCC	3 cut(s)	678, 694, 882
ScaI	AGTACT	1 cut(s)	954
SchI	GAGTC	2 cut(s)	788, 839
ScrFI	CCNGG	1 cut(s)	757
SfcI	CTRYAG	1 cut(s)	390
SfuI	TTCGAA	3 cut(s)	167, 430, 961
SinI	GGWCC	2 cut(s)	678, 882
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
SpeI	ACTAGT	1 cut(s)	1069
SsiI	CCGC	2 cut(s)	208, 830
SspI	AATATT	3 cut(s)	145, 538, 623
SspMI	CTAG	5 cut(s)	327, 354, 800, 1070, 1091
StyD4I	CCNGG	1 cut(s)	755
StyI	CCWWGG	2 cut(s)	690, 1008
TaaI	ACNGT	2 cut(s)	426, 969
TaqI	TCGA	6 cut(s)	167, 293, 430, 594, 775, 961
TaqII	GACCGA	2 cut(s)	695, 854
TatI	WGTACW	4 cut(s)	448, 553, 572, 952
TauI	GCSGC	1 cut(s)	833
TfiI	GAWTC	3 cut(s)	169, 234, 817
Tru1I	TTAA	3 cut(s)	534, 735, 971
Tru9I	TTAA	3 cut(s)	534, 735, 971
TseFI	GTSAC	1 cut(s)	860
TseI	GCWGC	3 cut(s)	18, 93, 257
Tsp45I	GTSAC	1 cut(s)	860
TspDTI	ATGAA	4 cut(s)	48, 204, 267, 1056
Van91I	CCANNNNNTGG	1 cut(s)	230
VpaK11BI	GGWCC	2 cut(s)	678, 882
XapI	RAATTY	4 cut(s)	51, 460, 577, 936
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	5 cut(s)	327, 354, 800, 1070, 1091
ZrmI	AGTACT	1 cut(s)	954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.