Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010082

Physical Location & Seq

Genomic Coordinates Forward (+)

19323158 .. 19323827

Gene Structure 670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G52105.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGTTGCAGCTGTTTTTCACGATAGCGTTCTCGGCGGCGCCGTTAACGTTGTACATACCGCCGATAAGATGTTTGACGGTGTTTGTGGAGACGATGGAGGAGATGGGAATGGAAGGTAGGGTTTATAGCTGGAGACTTTTTCCTCGAGCCAGAATTGCTTGGTCAAGGCTTCTCGATTGCTTCTTCTCCTCTTCACGTCCTCTCTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

70

Amino Acids

8.16

Weight (kDa)

8.88

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52105 AT3G52105
malus_domestica	MD02G1312900.v1.1 MD07G1010200.v1.1 MD12G1067900.v1.1 MD14G1068000.v1.1 MD17G1247100.v1.1
prunus_persica	Prupe.2G012500_v2.0.a1 Prupe.7G066300_v2.0.a1
pyrus_communis	pycom14g05610
rosa_chinensis	RchiOBHm_Chr1g0315891 RchiOBHm_Chr3g0481271
rosa_roxburghii	Rroxscaffold_4G00331330 Rroxscaffold_6G00400550
rosa_rugosa	Rorug01G0006800
rosa_samantha	Rh1CG014900 Rh1DG010500 Rh3CG272300 Rh3DG268700
rosa_wichuraiana	Rw1G001050 Rw3G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	37
AciI	CCGC	2 cut(s)	35, 59
AclI	AACGTT	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	1 cut(s)	53
AjiI	CACGTC	1 cut(s)	197
AluBI	AGCT	2 cut(s)	10, 129
AluI	AGCT	2 cut(s)	10, 129
Alw26I	GTCTC	2 cut(s)	83, 127
Ama87I	CYCGRG	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	7
AspLEI	GCGC	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	2 cut(s)	88, 97
BceAI	ACGGC	1 cut(s)	25
BcoDI	GTCTC	2 cut(s)	83, 127
BfoI	RGCGCY	1 cut(s)	41
BisI	GCNGC	2 cut(s)	8, 36
BlsI	GCNGC	2 cut(s)	9, 37
BmeT110I	CYCGRG	1 cut(s)	144
BmgBI	CACGTC	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	39
BpmI	CTGGAG	1 cut(s)	151
BsaHI	GRCGYC	1 cut(s)	38
BseRI	GAGGAG	2 cut(s)	113, 178
BseXI	GCAGC	1 cut(s)	19
BshNI	GGYRCC	1 cut(s)	37
BsiHKCI	CYCGRG	1 cut(s)	144
BsmAI	GTCTC	2 cut(s)	83, 127
BsmBI	CGTCTC	1 cut(s)	83
BsoBI	CYCGRG	1 cut(s)	144
Bsp1407I	TGTACA	1 cut(s)	51
BspACI	CCGC	2 cut(s)	35, 59
BspLI	GGNNCC	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	37
BsrGI	TGTACA	1 cut(s)	51
BssNI	GRCGYC	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	1 cut(s)	196
BstACI	GRCGYC	1 cut(s)	38
BstAUI	TGTACA	1 cut(s)	51
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstMAI	GTCTC	2 cut(s)	83, 127
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 155
BstV1I	GCAGC	1 cut(s)	19
BtrI	CACGTC	1 cut(s)	197
CfoI	GCGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	52
CviJI	RGCY	4 cut(s)	10, 129, 149, 169
CviKI_1	RGCY	4 cut(s)	10, 129, 149, 169
CviQI	GTAC	1 cut(s)	52
DinI	GGCGCC	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
Eco88I	CYCGRG	1 cut(s)	144
EgeI	GGCGCC	1 cut(s)	39
EheI	GGCGCC	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	83
FaiI	YATR	2 cut(s)	56, 126
Fnu4HI	GCNGC	2 cut(s)	8, 36
Fsp4HI	GCNGC	2 cut(s)	8, 36
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	2 cut(s)	8, 36
GsuI	CTGGAG	1 cut(s)	151
HaeII	RGCGCY	1 cut(s)	41
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	38
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HpaI	GTTAAC	1 cut(s)	45
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188III	TCNNGA	2 cut(s)	19, 173
Hpy8I	GTNNAC	1 cut(s)	45
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4IV	ACGT	2 cut(s)	47, 196
HpyCH4V	TGCA	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 155
HpySE526I	ACGT	2 cut(s)	47, 196
Hsp92I	GRCGYC	1 cut(s)	38
HspAI	GCGC	1 cut(s)	38
KasI	GGCGCC	1 cut(s)	37
KspAI	GTTAAC	1 cut(s)	45
LpnPI	CCDG	2 cut(s)	115, 163
Lsp1109I	GCAGC	1 cut(s)	19
MaeII	ACGT	2 cut(s)	47, 196
MboII	GAAGA	3 cut(s)	175, 183, 198
MluCI	AATT	1 cut(s)	153
Mly113I	GGCGCC	1 cut(s)	38
MnlI	CCTC	4 cut(s)	91, 153, 199, 210
MseI	TTAA	2 cut(s)	44, 211
MspA1I	CMGCKG	1 cut(s)	10
MwoI	GCNNNNNNNGC	2 cut(s)	32, 155
NarI	GGCGCC	1 cut(s)	38
NlaIV	GGNNCC	1 cut(s)	39
NmeAIII	GCCGAG	1 cut(s)	11
PaeR7I	CTCGAG	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PkrI	GCNGC	2 cut(s)	9, 37
PluTI	GGCGCC	1 cut(s)	41
Psp1406I	AACGTT	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	39
PspXI	VCTCGAGB	1 cut(s)	144
PvuII	CAGCTG	1 cut(s)	10
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SaqAI	TTAA	2 cut(s)	44, 211
SatI	GCNGC	2 cut(s)	8, 36
SetI	ASST	5 cut(s)	12, 50, 118, 131, 199
SfoI	GGCGCC	1 cut(s)	39
Sfr274I	CTCGAG	1 cut(s)	144
SlaI	CTCGAG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	144
SmoI	CTYRAG	1 cut(s)	144
Sse9I	AATT	1 cut(s)	153
SsiI	CCGC	2 cut(s)	35, 59
SspDI	GGCGCC	1 cut(s)	37
TaaI	ACNGT	1 cut(s)	79
TaiI	ACGT	2 cut(s)	50, 199
TaqI	TCGA	2 cut(s)	145, 174
TasI	AATT	1 cut(s)	153
TatI	WGTACW	1 cut(s)	51
TauI	GCSGC	1 cut(s)	38
Tru1I	TTAA	2 cut(s)	44, 211
Tru9I	TTAA	2 cut(s)	44, 211
TseI	GCWGC	1 cut(s)	7
XhoI	CTCGAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.