Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0010082

Physical Location & Seq

Genomic Coordinates Reverse (-)

29573363 .. 29573605

Gene Structure 243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1247100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGATGGTATTACAGGTGTTCTTCACACTGGCCTTCTCTGCCGTGCCTCTCACTCTCTACGTGTCTCAAATCAGAAGCCTAAACCCCTTCGTGGAGACCATGGAGGAACTCTTCTCCGAATCAAGAGCTTACACCATTAGGGTCTACCCACGTGTCCGACATCTTTGGTTTAGGATCTTGGATTGCTTACTTTGCAGCAGAACCACAAGACCCACAGATCGTTTATATCCTGAAATCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

81

Amino Acids

9.58

Weight (kDa)

8.8

Isoelectric Point (pI)

55.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52105 AT3G52105
malus_domestica	MD02G1312900.v1.1 MD07G1010200.v1.1 MD12G1067900.v1.1 MD14G1068000.v1.1 MD17G1247100.v1.1
prunus_persica	Prupe.2G012500_v2.0.a1 Prupe.7G066300_v2.0.a1
pyrus_communis	pycom14g05610
rosa_chinensis	RchiOBHm_Chr1g0315891 RchiOBHm_Chr3g0481271
rosa_roxburghii	Rroxscaffold_4G00331330 Rroxscaffold_6G00400550
rosa_rugosa	Rorug01G0006800
rosa_samantha	Rh1CG014900 Rh1DG010500 Rh3CG272300 Rh3DG268700
rosa_wichuraiana	Rw1G001050 Rw3G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	144
AclWI	GGATC	1 cut(s)	182
AcvI	CACGTG	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	91
AflIII	ACRYGT	2 cut(s)	60, 151
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
Alw26I	GTCTC	2 cut(s)	69, 89
AlwI	GGATC	1 cut(s)	182
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	195
BbrPI	CACGTG	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	207
BceAI	ACGGC	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	69, 89
BisI	GCNGC	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	197
BsaAI	YACGTR	2 cut(s)	61, 152
BsaI	GGTCTC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	207
BshFI	GGCC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	2 cut(s)	69, 89
BsnI	GGCC	1 cut(s)	32
Bso31I	GGTCTC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	174, 217
Bsp19I	CCATGG	1 cut(s)	99
BspANI	GGCC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	182
BspTNI	GGTCTC	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	2 cut(s)	174, 217
BssT1I	CCWWGG	1 cut(s)	99
Bst6I	CTCTTC	1 cut(s)	116
BstBAI	YACGTR	2 cut(s)	61, 152
BstDSI	CCRYGG	1 cut(s)	99
BstKTI	GATC	2 cut(s)	177, 220
BstMAI	GTCTC	2 cut(s)	69, 89
BstMBI	GATC	2 cut(s)	174, 217
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 192
BstV1I	GCAGC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	26
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	3 cut(s)	32, 78, 128
CviKI_1	RGCY	3 cut(s)	32, 78, 128
DpnI	GATC	2 cut(s)	176, 219
DpnII	GATC	2 cut(s)	174, 217
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	89
Eco72I	CACGTG	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	1 cut(s)	103
FaiI	YATR	2 cut(s)	101, 226
FatI	CATG	1 cut(s)	99
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	196
Fsp4HI	GCNGC	1 cut(s)	196
GluI	GCNGC	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	32
Hin1II	CATG	1 cut(s)	103
HinfI	GANTC	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	3 cut(s)	74, 118, 158
Hpy188III	TCNNGA	2 cut(s)	123, 230
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	2 cut(s)	43, 97
HpyCH4IV	ACGT	2 cut(s)	60, 151
HpyCH4V	TGCA	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 192
HpySE526I	ACGT	2 cut(s)	60, 151
Hsp92II	CATG	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	174, 217
LpnPI	CCDG	1 cut(s)	14
Lsp1109I	GCAGC	1 cut(s)	207
MaeII	ACGT	2 cut(s)	60, 151
MalI	GATC	2 cut(s)	176, 219
MboI	GATC	2 cut(s)	174, 217
MboII	GAAGA	2 cut(s)	13, 103
MflI	RGATCY	1 cut(s)	174
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	2 cut(s)	57, 97
MwoI	GCNNNNNNNGC	2 cut(s)	38, 192
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	2 cut(s)	174, 217
NlaIII	CATG	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	197
PmaCI	CACGTG	1 cut(s)	152
PmlI	CACGTG	1 cut(s)	152
Ppu21I	YACGTR	2 cut(s)	61, 152
PspCI	CACGTG	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	174
SatI	GCNGC	1 cut(s)	196
Sau3AI	GATC	2 cut(s)	174, 217
SetI	ASST	4 cut(s)	18, 63, 130, 154
StyI	CCWWGG	1 cut(s)	99
TaiI	ACGT	2 cut(s)	63, 154
TfiI	GAWTC	1 cut(s)	119
TscAI	CASTG	1 cut(s)	33
TseI	GCWGC	1 cut(s)	195
TspRI	CASTG	1 cut(s)	33
XmiI	GTMKAC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.