Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0010082

Physical Location & Seq

Genomic Coordinates Reverse (-)

1678418 .. 1683378

Gene Structure 4961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG010500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGTTTCTGCAGTTGTTTTTCACGGTGGCTTTCTCGGCGGTGCCTCTGACTCTTTACGTTCCGCCGCTCCGAAGCTTAAACCCGTTTGTGGAGACCATGGAGGATCTAATGCTGGAATCCAGAACCTACACGAATAGGGTCTACCCACGTGTCCGCCATATCTGGCGTAGGATCTTGGATTGTTTGCTTTGCAGCACCACCACCAGCATAAAAGATTGGAAAAGAAATGGGCCATCTAATGGCATTAAACGTTGCAATTATGCATCACGAGAATTTTGCGTGGTTGGTGGGCTGTTAAGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

11.71

Weight (kDa)

9.55

Isoelectric Point (pI)

55.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52105 AT3G52105
malus_domestica	MD02G1312900.v1.1 MD07G1010200.v1.1 MD12G1067900.v1.1 MD14G1068000.v1.1 MD17G1247100.v1.1
prunus_persica	Prupe.2G012500_v2.0.a1 Prupe.7G066300_v2.0.a1
pyrus_communis	pycom14g05610
rosa_chinensis	RchiOBHm_Chr1g0315891 RchiOBHm_Chr3g0481271
rosa_roxburghii	Rroxscaffold_4G00331330 Rroxscaffold_6G00400550
rosa_rugosa	Rorug01G0006800
rosa_samantha	Rh1CG014900 Rh1DG010500 Rh3CG272300 Rh3DG268700
rosa_wichuraiana	Rw1G001050 Rw3G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AccB7I	CCANNNNNTGG	1 cut(s)	239
AccBSI	CCGCTC	1 cut(s)	67
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	4 cut(s)	38, 62, 65, 154
AclI	AACGTT	1 cut(s)	250
AclWI	GGATC	2 cut(s)	111, 179
AcsI	RAATTY	1 cut(s)	272
AcvI	CACGTG	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	88, 239
AflIII	ACRYGT	1 cut(s)	148
AluBI	AGCT	2 cut(s)	75, 300
AluI	AGCT	2 cut(s)	75, 300
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	2 cut(s)	111, 179
AoxI	GGCC	1 cut(s)	230
ApeKI	GCWGC	1 cut(s)	192
ApoI	RAATTY	1 cut(s)	272
AspS9I	GGNCC	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	40
BauI	CACGAG	1 cut(s)	267
BbrPI	CACGTG	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	204
BccI	CCATC	1 cut(s)	241
BcgI	CGANNNNNNTGC	2 cut(s)	258, 292
BcoDI	GTCTC	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	8
BisI	GCNGC	2 cut(s)	65, 193
BlsI	GCNGC	2 cut(s)	66, 194
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	42
BmsI	GCATC	1 cut(s)	272
BsaAI	YACGTR	1 cut(s)	149
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 239
BseDI	CCNNGG	1 cut(s)	96
BseLI	CCNNNNNNNGG	2 cut(s)	88, 239
BseXI	GCAGC	1 cut(s)	204
BshFI	GGCC	1 cut(s)	232
BshNI	GGYRCC	1 cut(s)	40
BslI	CCNNNNNNNGG	2 cut(s)	88, 239
BsmAI	GTCTC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	232
Bso31I	GGTCTC	1 cut(s)	86
Bsp143I	GATC	2 cut(s)	103, 171
Bsp19I	CCATGG	1 cut(s)	96
BspACI	CCGC	4 cut(s)	38, 62, 65, 154
BspANI	GGCC	1 cut(s)	232
BspHI	TCATGA	1 cut(s)	302
BspLI	GGNNCC	1 cut(s)	42
BspMAI	CTGCAG	1 cut(s)	12
BspPI	GGATC	2 cut(s)	111, 179
BspT107I	GGYRCC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	103, 171
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	96
Bst2BI	CACGAG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	25
BstBAI	YACGTR	1 cut(s)	149
BstDSI	CCRYGG	1 cut(s)	96
BstKTI	GATC	2 cut(s)	106, 174
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	2 cut(s)	103, 171
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstSFI	CTRYAG	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	204
BstX2I	RGATCY	2 cut(s)	103, 171
BstYI	RGATCY	2 cut(s)	103, 171
BsuRI	GGCC	1 cut(s)	232
BtgI	CCRYGG	1 cut(s)	96
CciI	TCATGA	1 cut(s)	302
Cfr13I	GGNCC	1 cut(s)	230
CviAII	CATG	2 cut(s)	97, 303
CviJI	RGCY	5 cut(s)	29, 75, 232, 292, 300
CviKI_1	RGCY	5 cut(s)	29, 75, 232, 292, 300
DpnI	GATC	2 cut(s)	105, 173
DpnII	GATC	2 cut(s)	103, 171
EciI	GGCGGA	2 cut(s)	51, 143
Eco130I	CCWWGG	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	86
Eco72I	CACGTG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	96
EcoT22I	ATGCAT	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	2 cut(s)	100, 306
FaiI	YATR	5 cut(s)	98, 159, 209, 261, 304
FatI	CATG	2 cut(s)	96, 302
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	2 cut(s)	65, 193
Fsp4HI	GCNGC	2 cut(s)	65, 193
GluI	GCNGC	2 cut(s)	65, 193
HaeIII	GGCC	1 cut(s)	232
Hin1II	CATG	2 cut(s)	100, 306
HindIII	AAGCTT	1 cut(s)	73
HinfI	GANTC	2 cut(s)	49, 116
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	2 cut(s)	48, 71
Hpy188III	TCNNGA	3 cut(s)	120, 267, 303
Hpy8I	GTNNAC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	3 cut(s)	57, 148, 250
HpyCH4V	TGCA	4 cut(s)	10, 192, 255, 263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpySE526I	ACGT	3 cut(s)	57, 148, 250
Hsp92II	CATG	2 cut(s)	100, 306
Kzo9I	GATC	2 cut(s)	103, 171
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	4 cut(s)	98, 133, 148, 217
Lsp1109I	GCAGC	1 cut(s)	204
LweI	GCATC	1 cut(s)	272
MaeII	ACGT	3 cut(s)	57, 148, 250
MalI	GATC	2 cut(s)	105, 173
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	2 cut(s)	103, 171
MflI	RGATCY	2 cut(s)	103, 171
MluCI	AATT	2 cut(s)	256, 272
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	2 cut(s)	54, 94
Mph1103I	ATGCAT	1 cut(s)	265
MseI	TTAA	3 cut(s)	77, 246, 296
MwoI	GCNNNNNNNGC	1 cut(s)	35
NcoI	CCATGG	1 cut(s)	96
NdeII	GATC	2 cut(s)	103, 171
NlaIII	CATG	2 cut(s)	100, 306
NlaIV	GGNNCC	1 cut(s)	42
NmeAIII	GCCGAG	1 cut(s)	14
NsiI	ATGCAT	1 cut(s)	265
PagI	TCATGA	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	116
PflMI	CCANNNNNTGG	1 cut(s)	239
PkrI	GCNGC	2 cut(s)	66, 194
PleI	GAGTC	1 cut(s)	43
PmaCI	CACGTG	1 cut(s)	149
PmlI	CACGTG	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	149
Psp1406I	AACGTT	1 cut(s)	250
PspCI	CACGTG	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	230
PstI	CTGCAG	1 cut(s)	12
PsuI	RGATCY	2 cut(s)	103, 171
SaqAI	TTAA	3 cut(s)	77, 246, 296
SatI	GCNGC	2 cut(s)	65, 193
Sau3AI	GATC	2 cut(s)	103, 171
Sau96I	GGNCC	1 cut(s)	230
SchI	GAGTC	1 cut(s)	43
SetI	ASST	6 cut(s)	60, 77, 128, 151, 253, 302
SfaNI	GCATC	1 cut(s)	272
SfcI	CTRYAG	1 cut(s)	8
Sse9I	AATT	2 cut(s)	256, 272
SsiI	CCGC	4 cut(s)	38, 62, 65, 154
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	3 cut(s)	60, 151, 253
TasI	AATT	2 cut(s)	256, 272
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	3 cut(s)	77, 246, 296
Tru9I	TTAA	3 cut(s)	77, 246, 296
TseI	GCWGC	1 cut(s)	192
Van91I	CCANNNNNTGG	1 cut(s)	239
XapI	RAATTY	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	141
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.