Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0010082

Physical Location & Seq

Genomic Coordinates Forward (+)

22651576 .. 22651776

Gene Structure 201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00400550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGCTTCAGCTGATATTCGCGGTGGCTTTCTCGGCGGTGCCTCTGACGCTTTACGTGCCGCCGATCCGAAGCCTGAGCTTGTTCGTGGAGACCATCGAAGACATGGTTCGGCAAAGCCTGAATTACACGGTCAGTGTTTACCCTCGTGTTCGCGTCGCCTGGTCTCGTTTCTTCAACAACCTCCTCCGCTTTTCCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

66

Amino Acids

7.74

Weight (kDa)

10.8

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52105 AT3G52105
malus_domestica	MD02G1312900.v1.1 MD07G1010200.v1.1 MD12G1067900.v1.1 MD14G1068000.v1.1 MD17G1247100.v1.1
prunus_persica	Prupe.2G012500_v2.0.a1 Prupe.7G066300_v2.0.a1
pyrus_communis	pycom14g05610
rosa_chinensis	RchiOBHm_Chr1g0315891 RchiOBHm_Chr3g0481271
rosa_roxburghii	Rroxscaffold_4G00331330 Rroxscaffold_6G00400550
rosa_rugosa	Rorug01G0006800
rosa_samantha	Rh1CG014900 Rh1DG010500 Rh3CG272300 Rh3DG268700
rosa_wichuraiana	Rw1G001050 Rw3G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	37
AccII	CGCG	2 cut(s)	20, 153
AciI	CCGC	4 cut(s)	20, 35, 59, 187
AclWI	GGATC	1 cut(s)	58
AgsI	TTSAA	1 cut(s)	175
AjnI	CCWGG	2 cut(s)	158, 194
AluBI	AGCT	2 cut(s)	10, 78
AluI	AGCT	2 cut(s)	10, 78
Alw26I	GTCTC	2 cut(s)	83, 168
AlwI	GGATC	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	37
BauI	CACGAG	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	105
BccI	CCATC	1 cut(s)	101
BciT130I	CCWGG	2 cut(s)	160, 196
BcoDI	GTCTC	2 cut(s)	83, 168
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
Bme1390I	CCNGG	2 cut(s)	160, 196
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	2 cut(s)	160, 196
BpiI	GAAGAC	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	55
BsaI	GGTCTC	2 cut(s)	83, 168
BseBI	CCWGG	2 cut(s)	160, 196
BseMII	CTCAG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	173
Bsh1236I	CGCG	2 cut(s)	20, 153
BshNI	GGYRCC	1 cut(s)	37
BsmAI	GTCTC	2 cut(s)	83, 168
Bso31I	GGTCTC	2 cut(s)	83, 168
Bsp143I	GATC	1 cut(s)	63
BspACI	CCGC	4 cut(s)	20, 35, 59, 187
BspCNI	CTCAG	1 cut(s)	66
BspFNI	CGCG	2 cut(s)	20, 153
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	37
BspTNI	GGTCTC	2 cut(s)	83, 168
BssMI	GATC	1 cut(s)	63
BssSI	CACGAG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	144
Bst2UI	CCWGG	2 cut(s)	160, 196
Bst4CI	ACNGT	1 cut(s)	130
BstBAI	YACGTR	1 cut(s)	55
BstDEI	CTNAG	1 cut(s)	74
BstFNI	CGCG	2 cut(s)	20, 153
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	2 cut(s)	83, 168
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 46, 55
BstNI	CCWGG	2 cut(s)	160, 196
BstSCI	CCNGG	2 cut(s)	158, 194
BstUI	CGCG	2 cut(s)	20, 153
BstV2I	GAAGAC	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	139
CseI	GACGC	2 cut(s)	55, 142
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	5 cut(s)	10, 26, 72, 78, 117
CviKI_1	RGCY	5 cut(s)	10, 26, 72, 78, 117
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
Eco31I	GGTCTC	2 cut(s)	83, 168
EcoRII	CCWGG	2 cut(s)	158, 194
FaeI	CATG	1 cut(s)	106
FaiI	YATR	1 cut(s)	104
FatI	CATG	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	59
HgaI	GACGC	2 cut(s)	55, 142
Hin1II	CATG	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	45, 68
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	54
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 46, 55
HpyF3I	CTNAG	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	63
LpnPI	CCDG	5 cut(s)	86, 131, 145, 172, 181
MaeII	ACGT	1 cut(s)	54
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	2 cut(s)	110, 163
MluCI	AATT	1 cut(s)	121
MnlI	CCTC	4 cut(s)	51, 153, 191, 194
MspA1I	CMGCKG	1 cut(s)	10
MspR9I	CCNGG	2 cut(s)	160, 196
MvaI	CCWGG	2 cut(s)	160, 196
MvnI	CGCG	2 cut(s)	20, 153
MwoI	GCNNNNNNNGC	3 cut(s)	32, 46, 55
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	39
NmeAIII	GCCGAG	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	60
Ppu21I	YACGTR	1 cut(s)	55
Psp6I	CCWGG	2 cut(s)	158, 194
PspGI	CCWGG	2 cut(s)	158, 194
PspN4I	GGNNCC	1 cut(s)	39
PvuII	CAGCTG	1 cut(s)	10
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	1 cut(s)	63
ScrFI	CCNGG	2 cut(s)	160, 196
SetI	ASST	5 cut(s)	12, 57, 80, 183, 200
Sse9I	AATT	1 cut(s)	121
SsiI	CCGC	4 cut(s)	20, 35, 59, 187
StyD4I	CCNGG	2 cut(s)	158, 194
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	96
TasI	AATT	1 cut(s)	121
TauI	GCSGC	1 cut(s)	61
TscAI	CASTG	1 cut(s)	139
TspRI	CASTG	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.