MD12G1067900.v1.1

histone methyltransferase activity (H3-K4 specific)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0010082
Physical Location & Seq
Reverse (-)
8046370 .. 8046567
198 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1067900.v1.1.491

Sequence Viewer

Length: 198 bp
ATGCTGCAGCTGCTATTCGCGGCGGCCTTCTCGGCGGTGCCTTTGACGCTTTACGTGCCGCCTATCCGAAGCCTGACCCTGTTCGTGGAGACCGTCGAAGACTTCCTCCGCCACACCAGCATGTACACCCAAAGAATCTACCCGCGTCTCCGCCTCGCCTTCTCTCGCCTTCTCAGCTCCCTCCGTTTCACCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRC_subunit PHD SET

Protein Analysis

66

Amino Acids

7.64

Weight (kDa)

11.23

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 37
AccII CGCG 2 cut(s) 20, 145
AciI CCGC 7 cut(s) 20, 23, 35, 59, 109, 143, 151
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 85
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 2 cut(s) 10, 177
AluI AGCT 2 cut(s) 10, 177
Alw26I GTCTC 2 cut(s) 83, 152
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 3 cut(s) 4, 7, 10
AsuHPI GGTGA 1 cut(s) 181
BanI GGYRCC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 19
BciT130I CCWGG 1 cut(s) 193
BcoDI GTCTC 2 cut(s) 83, 152
BfmI CTRYAG 1 cut(s) 5
BglI GCCNNNNNGGC 1 cut(s) 32
BisI GCNGC 6 cut(s) 5, 8, 11, 21, 24, 59
BlsI GCNGC 6 cut(s) 6, 9, 12, 22, 25, 60
Bme1390I CCNGG 1 cut(s) 193
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 193
BpiI GAAGAC 1 cut(s) 105
BsaAI YACGTR 1 cut(s) 55
BsaI GGTCTC 1 cut(s) 83
Bsc4I CCNNNNNNNGG 1 cut(s) 85
BseBI CCWGG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 19
Bsh1236I CGCG 2 cut(s) 20, 145
BshFI GGCC 1 cut(s) 26
BshNI GGYRCC 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 2 cut(s) 83, 152
BsmBI CGTCTC 1 cut(s) 152
BsnI GGCC 1 cut(s) 26
Bso31I GGTCTC 1 cut(s) 83
Bsp1407I TGTACA 1 cut(s) 123
BspACI CCGC 7 cut(s) 20, 23, 35, 59, 109, 143, 151
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 186
BspFNI CGCG 2 cut(s) 20, 145
BspLI GGNNCC 1 cut(s) 39
BspMAI CTGCAG 1 cut(s) 9
BspT107I GGYRCC 1 cut(s) 37
BspTNI GGTCTC 1 cut(s) 83
BsrGI TGTACA 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 94
BstAUI TGTACA 1 cut(s) 123
BstBAI YACGTR 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 173
BstFNI CGCG 2 cut(s) 20, 145
BstMAI GTCTC 2 cut(s) 83, 152
BstMWI GCNNNNNNNGC 6 cut(s) 10, 32, 46, 55, 117, 174
BstNI CCWGG 1 cut(s) 193
BstNSI RCATGY 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 191
BstSFI CTRYAG 1 cut(s) 5
BstUI CGCG 2 cut(s) 20, 145
BstV1I GCAGC 1 cut(s) 19
BstV2I GAAGAC 1 cut(s) 105
BsuRI GGCC 1 cut(s) 26
CseI GACGC 2 cut(s) 55, 134
CsiI ACCWGGT 1 cut(s) 191
Csp6I GTAC 1 cut(s) 124
CviAII CATG 1 cut(s) 121
CviJI RGCY 4 cut(s) 10, 26, 72, 177
CviKI_1 RGCY 4 cut(s) 10, 26, 72, 177
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 173
EciI GGCGGA 2 cut(s) 98, 140
Eco31I GGTCTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 191
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 1 cut(s) 124
FaiI YATR 1 cut(s) 122
FatI CATG 1 cut(s) 120
FauI CCCGC 1 cut(s) 150
Fnu4HI GCNGC 6 cut(s) 5, 8, 11, 21, 24, 59
Fsp4HI GCNGC 6 cut(s) 5, 8, 11, 21, 24, 59
GluI GCNGC 6 cut(s) 5, 8, 11, 21, 24, 59
HaeIII GGCC 1 cut(s) 26
HgaI GACGC 2 cut(s) 55, 134
Hin1II CATG 1 cut(s) 124
HinfI GANTC 1 cut(s) 135
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 1 cut(s) 68
Hpy8I GTNNAC 1 cut(s) 126
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 3 cut(s) 37, 169, 179
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 1 cut(s) 7
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 32, 46, 55, 117, 174
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 1 cut(s) 124
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 4 cut(s) 86, 92, 130, 178
Lsp1109I GCAGC 1 cut(s) 19
MabI ACCWGGT 1 cut(s) 191
MaeII ACGT 1 cut(s) 54
MboII GAAGA 1 cut(s) 110
MnlI CCTC 3 cut(s) 116, 164, 191
MslI CAYNNNNRTG 1 cut(s) 119
MspA1I CMGCKG 1 cut(s) 10
MspR9I CCNGG 1 cut(s) 193
MvaI CCWGG 1 cut(s) 193
MvnI CGCG 2 cut(s) 20, 145
MwoI GCNNNNNNNGC 6 cut(s) 10, 32, 46, 55, 117, 174
NlaIII CATG 1 cut(s) 124
NlaIV GGNNCC 1 cut(s) 39
NmeAIII GCCGAG 1 cut(s) 11
NspI RCATGY 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PfeI GAWTC 1 cut(s) 135
PkrI GCNGC 6 cut(s) 6, 9, 12, 22, 25, 60
Ppu21I YACGTR 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 39
PstI CTGCAG 1 cut(s) 9
PvuII CAGCTG 1 cut(s) 10
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 119
SatI GCNGC 6 cut(s) 5, 8, 11, 21, 24, 59
ScrFI CCNGG 1 cut(s) 193
SetI ASST 4 cut(s) 12, 57, 179, 197
SexAI ACCWGGT 1 cut(s) 191
SfcI CTRYAG 1 cut(s) 5
SmiMI CAYNNNNRTG 1 cut(s) 119
SsiI CCGC 7 cut(s) 20, 23, 35, 59, 109, 143, 151
StyD4I CCNGG 1 cut(s) 191
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 1 cut(s) 57
TaqI TCGA 1 cut(s) 96
TatI WGTACW 1 cut(s) 123
TauI GCSGC 3 cut(s) 23, 26, 61
TfiI GAWTC 1 cut(s) 135
TseI GCWGC 3 cut(s) 4, 7, 10
TspGWI ACGGA 1 cut(s) 173
XceI RCATGY 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.