Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0010082

Physical Location & Seq

Genomic Coordinates Reverse (-)

26876244 .. 26876778

Gene Structure 535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG268700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGCTTCAGCTGATATTCGCGGTGGCTTTCTCGGCGGTGCCTCTGACGCTTTACGTGCCGCCGATCCGAAGCCTGAGCTTGTTCGTGGAGACCATCGAAGACATCGTCCGGCAAAGCCTGAATTACACGGGCAGTGTTTACCCTCGTGTTCGCGTCGCCTGGTCTCGTTTCTTCAACAACCTCCTCCGCTTTTCCAGACGCAGCCGCCGTTTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

72

Amino Acids

8.51

Weight (kDa)

11.65

Isoelectric Point (pI)

74.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52105 AT3G52105
malus_domestica	MD02G1312900.v1.1 MD07G1010200.v1.1 MD12G1067900.v1.1 MD14G1068000.v1.1 MD17G1247100.v1.1
prunus_persica	Prupe.2G012500_v2.0.a1 Prupe.7G066300_v2.0.a1
pyrus_communis	pycom14g05610
rosa_chinensis	RchiOBHm_Chr1g0315891 RchiOBHm_Chr3g0481271
rosa_roxburghii	Rroxscaffold_4G00331330 Rroxscaffold_6G00400550
rosa_rugosa	Rorug01G0006800
rosa_samantha	Rh1CG014900 Rh1DG010500 Rh3CG272300 Rh3DG268700
rosa_wichuraiana	Rw1G001050 Rw3G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	37
AccII	CGCG	2 cut(s)	20, 153
AciI	CCGC	5 cut(s)	20, 35, 59, 187, 205
AclWI	GGATC	1 cut(s)	58
AgsI	TTSAA	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	158
AluBI	AGCT	2 cut(s)	10, 78
AluI	AGCT	2 cut(s)	10, 78
Alw26I	GTCTC	2 cut(s)	83, 168
AlwI	GGATC	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	201
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
BanI	GGYRCC	1 cut(s)	37
BauI	CACGAG	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	1 cut(s)	192
BciT130I	CCWGG	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	83, 168
BisI	GCNGC	3 cut(s)	59, 202, 205
BlsI	GCNGC	3 cut(s)	60, 203, 206
Bme1390I	CCNGG	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	55
BsaI	GGTCTC	2 cut(s)	83, 168
BseBI	CCWGG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	213
Bsh1236I	CGCG	2 cut(s)	20, 153
BshNI	GGYRCC	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	109
BsmAI	GTCTC	2 cut(s)	83, 168
Bso31I	GGTCTC	2 cut(s)	83, 168
Bsp143I	GATC	1 cut(s)	63
BspACI	CCGC	5 cut(s)	20, 35, 59, 187, 205
BspCNI	CTCAG	1 cut(s)	66
BspFNI	CGCG	2 cut(s)	20, 153
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	37
BspTNI	GGTCTC	2 cut(s)	83, 168
BssMI	GATC	1 cut(s)	63
BssSI	CACGAG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	160
BstBAI	YACGTR	1 cut(s)	55
BstDEI	CTNAG	1 cut(s)	74
BstFNI	CGCG	2 cut(s)	20, 153
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	2 cut(s)	83, 168
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 46, 55
BstNI	CCWGG	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	158
BstUI	CGCG	2 cut(s)	20, 153
BstV1I	GCAGC	1 cut(s)	213
BstV2I	GAAGAC	1 cut(s)	105
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	139
CseI	GACGC	3 cut(s)	55, 142, 207
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	6 cut(s)	10, 26, 72, 78, 117, 204
CviKI_1	RGCY	6 cut(s)	10, 26, 72, 78, 117, 204
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
Eco31I	GGTCTC	2 cut(s)	83, 168
EcoRII	CCWGG	1 cut(s)	158
FaeI	CATG	1 cut(s)	217
FaiI	YATR	1 cut(s)	215
FatI	CATG	1 cut(s)	213
Fnu4HI	GCNGC	3 cut(s)	59, 202, 205
Fsp4HI	GCNGC	3 cut(s)	59, 202, 205
GluI	GCNGC	3 cut(s)	59, 202, 205
HapII	CCGG	1 cut(s)	109
HgaI	GACGC	3 cut(s)	55, 142, 207
Hin1II	CATG	1 cut(s)	217
HpaII	CCGG	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	45, 68
Hpy188III	TCNNGA	1 cut(s)	195
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	54
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 46, 55
HpyF3I	CTNAG	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	63
LpnPI	CCDG	6 cut(s)	86, 122, 131, 145, 172, 208
Lsp1109I	GCAGC	1 cut(s)	213
MaeII	ACGT	1 cut(s)	54
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	2 cut(s)	110, 163
MluCI	AATT	1 cut(s)	121
MnlI	CCTC	4 cut(s)	51, 153, 191, 194
MspA1I	CMGCKG	1 cut(s)	10
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	160
MvnI	CGCG	2 cut(s)	20, 153
MwoI	GCNNNNNNNGC	3 cut(s)	32, 46, 55
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	1 cut(s)	39
NmeAIII	GCCGAG	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 205
PflFI	GACNNNGTC	1 cut(s)	104
PkrI	GCNGC	3 cut(s)	60, 203, 206
Ppu21I	YACGTR	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	39
PsyI	GACNNNGTC	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	10
SatI	GCNGC	3 cut(s)	59, 202, 205
Sau3AI	GATC	1 cut(s)	63
ScrFI	CCNGG	1 cut(s)	160
SetI	ASST	4 cut(s)	12, 57, 80, 183
Sse9I	AATT	1 cut(s)	121
SsiI	CCGC	5 cut(s)	20, 35, 59, 187, 205
StyD4I	CCNGG	1 cut(s)	158
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	96
TasI	AATT	1 cut(s)	121
TauI	GCSGC	2 cut(s)	61, 207
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	1 cut(s)	201
TspDTI	ATGAA	1 cut(s)	202
TspRI	CASTG	1 cut(s)	139
Tth111I	GACNNNGTC	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.