Rh1CG014900

histone methyltransferase activity (H3-K4 specific)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0010082
Physical Location & Seq
Reverse (-)
2317119 .. 2323159
6041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG014900.1

Sequence Viewer

Length: 297 bp
ATGTTTCTGCAGTTGTTTTTCACGGTGGCTTTCTCGGCGGTGCCTCTGACTCTTTACGTTCCGCCGCTCCGAAGCTTAAACCCGTTTGTGGAGACCATGGAGGATCTAATGTCGGAATCCAGAACCTACACGAGTAGGGTCTACCCACGTGTCCGCCATATCTGGCGTAGGATGTTGGATTGTTTGCTTTGCAGCACCACCAGCATAAAAGATTGGAAAAGAAATGGACCATCTAATGTGGCATTAAGCGTTGCAATTATGCAAAACGAGAATTTTGCGTGGTTGGTGGGCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.38

Weight (kDa)

9.02

Isoelectric Point (pI)

56.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 40
AccBSI CCGCTC 1 cut(s) 67
AccI GTMKAC 1 cut(s) 141
AciI CCGC 4 cut(s) 38, 62, 65, 154
AclWI GGATC 1 cut(s) 111
AcsI RAATTY 1 cut(s) 271
AcvI CACGTG 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 88
AflIII ACRYGT 1 cut(s) 148
AluBI AGCT 1 cut(s) 75
AluI AGCT 1 cut(s) 75
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 192
ApoI RAATTY 1 cut(s) 271
AspS9I GGNCC 1 cut(s) 227
AvaII GGWCC 1 cut(s) 227
BanI GGYRCC 1 cut(s) 40
BauI CACGAG 1 cut(s) 130
BbrPI CACGTG 1 cut(s) 149
BbvI GCAGC 1 cut(s) 204
BccI CCATC 1 cut(s) 238
BcgI CGANNNNNNTGC 2 cut(s) 257, 291
BcoDI GTCTC 1 cut(s) 86
BfmI CTRYAG 1 cut(s) 8
BisI GCNGC 2 cut(s) 65, 193
BlsI GCNGC 2 cut(s) 66, 194
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 42
BsaAI YACGTR 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 204
BshNI GGYRCC 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 1 cut(s) 86
Bso31I GGTCTC 1 cut(s) 86
Bsp143I GATC 1 cut(s) 103
Bsp19I CCATGG 1 cut(s) 96
BspACI CCGC 4 cut(s) 38, 62, 65, 154
BspLI GGNNCC 1 cut(s) 42
BspMAI CTGCAG 1 cut(s) 12
BspPI GGATC 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 40
BspTNI GGTCTC 1 cut(s) 86
BsrBI CCGCTC 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 1 cut(s) 103
BssSI CACGAG 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 25
BstBAI YACGTR 1 cut(s) 149
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 177
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 2 cut(s) 35, 201
BstSFI CTRYAG 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 227
CviAII CATG 1 cut(s) 97
CviJI RGCY 3 cut(s) 29, 75, 291
CviKI_1 RGCY 3 cut(s) 29, 75, 291
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
EciI GGCGGA 2 cut(s) 51, 143
Eco130I CCWWGG 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 227
Eco72I CACGTG 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 1 cut(s) 100
FaiI YATR 4 cut(s) 98, 159, 206, 260
FatI CATG 1 cut(s) 96
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 65, 193
FokI GGATG 1 cut(s) 184
Fsp4HI GCNGC 2 cut(s) 65, 193
GluI GCNGC 2 cut(s) 65, 193
Hin1II CATG 1 cut(s) 100
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 2 cut(s) 49, 116
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 3 cut(s) 48, 71, 115
Hpy188III TCNNGA 1 cut(s) 120
Hpy8I GTNNAC 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4IV ACGT 2 cut(s) 57, 148
HpyCH4V TGCA 4 cut(s) 10, 192, 254, 262
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 201
HpySE526I ACGT 2 cut(s) 57, 148
Hsp92II CATG 1 cut(s) 100
Kzo9I GATC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 72
LpnPI CCDG 3 cut(s) 133, 148, 214
Lsp1109I GCAGC 1 cut(s) 204
MaeII ACGT 2 cut(s) 57, 148
MalI GATC 1 cut(s) 105
MbiI CCGCTC 1 cut(s) 67
MboI GATC 1 cut(s) 103
MflI RGATCY 1 cut(s) 103
MluCI AATT 2 cut(s) 255, 271
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 2 cut(s) 93, 156
MnlI CCTC 2 cut(s) 54, 94
MseI TTAA 3 cut(s) 77, 245, 295
MwoI GCNNNNNNNGC 2 cut(s) 35, 201
NcoI CCATGG 1 cut(s) 96
NdeII GATC 1 cut(s) 103
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 42
NmeAIII GCCGAG 1 cut(s) 14
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 2 cut(s) 66, 194
PleI GAGTC 1 cut(s) 43
PmaCI CACGTG 1 cut(s) 149
PmlI CACGTG 1 cut(s) 149
PpsI GAGTC 1 cut(s) 43
Ppu21I YACGTR 1 cut(s) 149
PspCI CACGTG 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 227
PstI CTGCAG 1 cut(s) 12
PsuI RGATCY 1 cut(s) 103
SaqAI TTAA 3 cut(s) 77, 245, 295
SatI GCNGC 2 cut(s) 65, 193
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 1 cut(s) 43
SetI ASST 4 cut(s) 60, 77, 128, 151
SfcI CTRYAG 1 cut(s) 8
SinI GGWCC 1 cut(s) 227
Sse9I AATT 2 cut(s) 255, 271
SsiI CCGC 4 cut(s) 38, 62, 65, 154
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 25
TaiI ACGT 2 cut(s) 60, 151
TasI AATT 2 cut(s) 255, 271
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 3 cut(s) 77, 245, 295
Tru9I TTAA 3 cut(s) 77, 245, 295
TseI GCWGC 1 cut(s) 192
VpaK11BI GGWCC 1 cut(s) 227
XapI RAATTY 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.