pycom14g05610

histone methyltransferase activity (H3-K4 specific)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0010082
Physical Location & Seq
Reverse (-)
5414858 .. 5415058
201 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g05610.1

Sequence Viewer

Length: 201 bp
ATGCTGCAGCTGCTATTCGCGGTGGCATTCTCGGCGGTGCCTCTGACGCTTTACGTGCCGCCGATCCGAAGCCTGAACCTGTTCGTGGAGACCGTCGAAGACCTCCTCCACCACACCACCGTGTACACCCGCAGTCTCTACCCGCGTCTCCGCCTCGGCTTCTCTCGCCTCCTCAGCTCCCTACTCCGCTTCACCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRC_subunit PHD SET

Protein Analysis

67

Amino Acids

7.66

Weight (kDa)

10.8

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 37
AccII CGCG 2 cut(s) 20, 145
AciI CCGC 7 cut(s) 20, 35, 59, 130, 143, 151, 187
AclWI GGATC 1 cut(s) 58
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 85
AjnI CCWGG 1 cut(s) 194
AleI CACNNNNGTG 1 cut(s) 119
AluBI AGCT 2 cut(s) 10, 177
AluI AGCT 2 cut(s) 10, 177
Alw26I GTCTC 3 cut(s) 83, 140, 152
AlwI GGATC 1 cut(s) 58
ApeKI GCWGC 3 cut(s) 4, 7, 10
Asp700I GAANNNNTTC 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 184
BanI GGYRCC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 105
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 19
BciT130I CCWGG 1 cut(s) 196
BcoDI GTCTC 3 cut(s) 83, 140, 152
BfmI CTRYAG 1 cut(s) 5
BisI GCNGC 4 cut(s) 5, 8, 11, 59
BlsI GCNGC 4 cut(s) 6, 9, 12, 60
Bme1390I CCNGG 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 173
BsaAI YACGTR 1 cut(s) 55
BsaI GGTCTC 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 154
Bsc4I CCNNNNNNNGG 1 cut(s) 85
BseBI CCWGG 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 187
BseRI GAGGAG 2 cut(s) 95, 161
BseXI GCAGC 1 cut(s) 19
Bsh1236I CGCG 2 cut(s) 20, 145
BshNI GGYRCC 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 3 cut(s) 83, 140, 152
BsmBI CGTCTC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 26
Bso31I GGTCTC 1 cut(s) 83
Bsp1407I TGTACA 1 cut(s) 123
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 7 cut(s) 20, 35, 59, 130, 143, 151, 187
BspCNI CTCAG 1 cut(s) 186
BspFNI CGCG 2 cut(s) 20, 145
BspLI GGNNCC 1 cut(s) 39
BspMAI CTGCAG 1 cut(s) 9
BspPI GGATC 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 37
BspTNI GGTCTC 1 cut(s) 83
BsrGI TGTACA 1 cut(s) 123
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 196
Bst4CI ACNGT 2 cut(s) 94, 121
BstAUI TGTACA 1 cut(s) 123
BstBAI YACGTR 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 173
BstFNI CGCG 2 cut(s) 20, 145
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 3 cut(s) 83, 140, 152
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 6 cut(s) 10, 32, 46, 55, 165, 174
BstNI CCWGG 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 5
BstUI CGCG 2 cut(s) 20, 145
BstV1I GCAGC 1 cut(s) 19
BstV2I GAAGAC 1 cut(s) 105
CseI GACGC 2 cut(s) 55, 134
CsiI ACCWGGT 1 cut(s) 194
Csp6I GTAC 1 cut(s) 124
CviJI RGCY 4 cut(s) 10, 72, 159, 177
CviKI_1 RGCY 4 cut(s) 10, 72, 159, 177
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 173
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
EciI GGCGGA 1 cut(s) 140
Eco31I GGTCTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 194
Esp3I CGTCTC 1 cut(s) 152
FauI CCCGC 2 cut(s) 137, 150
Fnu4HI GCNGC 4 cut(s) 5, 8, 11, 59
Fsp4HI GCNGC 4 cut(s) 5, 8, 11, 59
GluI GCNGC 4 cut(s) 5, 8, 11, 59
HgaI GACGC 2 cut(s) 55, 134
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 2 cut(s) 124, 126
Hpy188I TCNGA 2 cut(s) 45, 68
Hpy8I GTNNAC 2 cut(s) 124, 126
Hpy99I CGWCG 1 cut(s) 98
HpyCH4III ACNGT 2 cut(s) 94, 121
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 1 cut(s) 7
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 32, 46, 55, 165, 174
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 1 cut(s) 54
Kzo9I GATC 1 cut(s) 63
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 3 cut(s) 86, 92, 181
Lsp1109I GCAGC 1 cut(s) 19
MabI ACCWGGT 1 cut(s) 194
MaeII ACGT 1 cut(s) 54
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 1 cut(s) 110
MnlI CCTC 6 cut(s) 51, 113, 116, 164, 179, 182
MroXI GAANNNNTTC 1 cut(s) 80
MslI CAYNNNNRTG 1 cut(s) 119
MspA1I CMGCKG 1 cut(s) 10
MspR9I CCNGG 1 cut(s) 196
Mva1269I GAATGC 1 cut(s) 26
MvaI CCWGG 1 cut(s) 196
MvnI CGCG 2 cut(s) 20, 145
MwoI GCNNNNNNNGC 6 cut(s) 10, 32, 46, 55, 165, 174
NdeII GATC 1 cut(s) 63
NlaIV GGNNCC 1 cut(s) 39
NmeAIII GCCGAG 2 cut(s) 11, 135
OliI CACNNNNGTG 1 cut(s) 119
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PctI GAATGC 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 80
PkrI GCNGC 4 cut(s) 6, 9, 12, 60
Ppu21I YACGTR 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 194
PspGI CCWGG 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 39
PstI CTGCAG 1 cut(s) 9
PvuII CAGCTG 1 cut(s) 10
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 119
SatI GCNGC 4 cut(s) 5, 8, 11, 59
Sau3AI GATC 1 cut(s) 63
ScrFI CCNGG 1 cut(s) 196
SetI ASST 6 cut(s) 12, 57, 81, 105, 179, 200
SexAI ACCWGGT 1 cut(s) 194
SfcI CTRYAG 1 cut(s) 5
SmiMI CAYNNNNRTG 1 cut(s) 119
SsiI CCGC 7 cut(s) 20, 35, 59, 130, 143, 151, 187
StyD4I CCNGG 1 cut(s) 194
TaaI ACNGT 2 cut(s) 94, 121
TaiI ACGT 1 cut(s) 57
TaqI TCGA 1 cut(s) 96
TatI WGTACW 1 cut(s) 123
TauI GCSGC 1 cut(s) 61
TseI GCWGC 3 cut(s) 4, 7, 10
XmnI GAANNNNTTC 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.