Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010082

Physical Location & Seq

Genomic Coordinates Forward (+)

36858212 .. 36860448

Gene Structure 2237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1312900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGCTATTGCAGTTGTTCTTCACAGTGGCCTTCTCTGCAGTGCCTCTCACTCTCTACGTGCCTCCAATCAGAAGCCTAAACCCCTTAGTGGAGACCATGGAGGAACTCTTCTCCGAATCAAGAGCTTACACCAATAGGGTCTACCCACGTGTCCGACATCTTTGGTTTAGGATCTTGGATTGCTTACTTTGCAGCAGAACCACAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

70

Amino Acids

8.19

Weight (kDa)

9.38

Isoelectric Point (pI)

52.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52105 AT3G52105
malus_domestica	MD02G1312900.v1.1 MD07G1010200.v1.1 MD12G1067900.v1.1 MD14G1068000.v1.1 MD17G1247100.v1.1
prunus_persica	Prupe.2G012500_v2.0.a1 Prupe.7G066300_v2.0.a1
pyrus_communis	pycom14g05610
rosa_chinensis	RchiOBHm_Chr1g0315891 RchiOBHm_Chr3g0481271
rosa_roxburghii	Rroxscaffold_4G00331330 Rroxscaffold_6G00400550
rosa_rugosa	Rorug01G0006800
rosa_samantha	Rh1CG014900 Rh1DG010500 Rh3CG272300 Rh3DG268700
rosa_wichuraiana	Rw1G001050 Rw3G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	141
AclWI	GGATC	1 cut(s)	179
AcvI	CACGTG	1 cut(s)	149
AdeI	CACNNNGTG	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	88
AflIII	ACRYGT	1 cut(s)	148
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	192
BbrPI	CACGTG	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	36
BisI	GCNGC	1 cut(s)	193
BlsI	GCNGC	1 cut(s)	194
BsaAI	YACGTR	2 cut(s)	58, 149
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	204
BshFI	GGCC	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	29
Bso31I	GGTCTC	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	171
Bsp19I	CCATGG	1 cut(s)	96
BspANI	GGCC	1 cut(s)	29
BspMAI	CTGCAG	1 cut(s)	40
BspPI	GGATC	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	113
BstBAI	YACGTR	2 cut(s)	58, 149
BstDEI	CTNAG	1 cut(s)	85
BstDSI	CCRYGG	1 cut(s)	96
BstKTI	GATC	1 cut(s)	174
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	171
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 189
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	29
BtgI	CCRYGG	1 cut(s)	96
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	2 cut(s)	30, 45
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	3 cut(s)	29, 75, 125
CviKI_1	RGCY	3 cut(s)	29, 75, 125
DdeI	CTNAG	1 cut(s)	85
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
DraIII	CACNNNGTG	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco130I	CCWWGG	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	86
Eco72I	CACGTG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	1 cut(s)	100
FaiI	YATR	1 cut(s)	98
FatI	CATG	1 cut(s)	96
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	1 cut(s)	193
Fsp4HI	GCNGC	1 cut(s)	193
GluI	GCNGC	1 cut(s)	193
HaeIII	GGCC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	100
HinfI	GANTC	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	3 cut(s)	71, 115, 155
Hpy188III	TCNNGA	1 cut(s)	120
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	2 cut(s)	57, 148
HpyCH4V	TGCA	3 cut(s)	10, 38, 192
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 189
HpyF3I	CTNAG	1 cut(s)	85
HpySE526I	ACGT	2 cut(s)	57, 148
Hsp92II	CATG	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	171
Lsp1109I	GCAGC	1 cut(s)	204
MaeII	ACGT	2 cut(s)	57, 148
MalI	GATC	1 cut(s)	173
MboI	GATC	1 cut(s)	171
MboII	GAAGA	2 cut(s)	10, 100
MflI	RGATCY	1 cut(s)	171
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	3 cut(s)	54, 72, 94
MwoI	GCNNNNNNNGC	2 cut(s)	35, 189
NcoI	CCATGG	1 cut(s)	96
NdeII	GATC	1 cut(s)	171
NlaIII	CATG	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	194
PmaCI	CACGTG	1 cut(s)	149
PmlI	CACGTG	1 cut(s)	149
Ppu21I	YACGTR	2 cut(s)	58, 149
PspCI	CACGTG	1 cut(s)	149
PstI	CTGCAG	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	171
SatI	GCNGC	1 cut(s)	193
Sau3AI	GATC	1 cut(s)	171
SetI	ASST	4 cut(s)	60, 127, 151, 209
SfcI	CTRYAG	1 cut(s)	36
SgeI	CNNG	6 cut(s)	70, 109, 132, 159, 161, 187
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	2 cut(s)	60, 151
TfiI	GAWTC	1 cut(s)	116
TscAI	CASTG	2 cut(s)	30, 45
TseI	GCWGC	1 cut(s)	192
TspRI	CASTG	2 cut(s)	30, 45
XmiI	GTMKAC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.