Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0010082

Physical Location & Seq

Genomic Coordinates Reverse (-)

1569341 .. 1571532

Gene Structure 2192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G001050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGTTTCTGCAGTTGTTTTTCACGGTGGCTTTCTCGGCGGTGCCTCTGACTCTTTACGTTCCGCCGCTCCGAAGCTTAAACCCGTTTGTGGAGACCATGGAGGATCTAATGTCGGAATCCAGAACCTACACGAGTAGGGTCTACCCACGTGTCCGCCATCTCTGGCGTAGGATGTTGGATTGTTTGCTTTGCAGCACCACCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

68

Amino Acids

8.04

Weight (kDa)

8.84

Isoelectric Point (pI)

71.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52105 AT3G52105
malus_domestica	MD02G1312900.v1.1 MD07G1010200.v1.1 MD12G1067900.v1.1 MD14G1068000.v1.1 MD17G1247100.v1.1
prunus_persica	Prupe.2G012500_v2.0.a1 Prupe.7G066300_v2.0.a1
pyrus_communis	pycom14g05610
rosa_chinensis	RchiOBHm_Chr1g0315891 RchiOBHm_Chr3g0481271
rosa_roxburghii	Rroxscaffold_4G00331330 Rroxscaffold_6G00400550
rosa_rugosa	Rorug01G0006800
rosa_samantha	Rh1CG014900 Rh1DG010500 Rh3CG272300 Rh3DG268700
rosa_wichuraiana	Rw1G001050 Rw3G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AccBSI	CCGCTC	1 cut(s)	67
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	4 cut(s)	38, 62, 65, 154
AclWI	GGATC	1 cut(s)	111
AcvI	CACGTG	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	88
AflIII	ACRYGT	1 cut(s)	148
AluBI	AGCT	2 cut(s)	75, 204
AluI	AGCT	2 cut(s)	75, 204
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	40
BauI	CACGAG	1 cut(s)	130
BbrPI	CACGTG	1 cut(s)	149
BccI	CCATC	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	8
BisI	GCNGC	2 cut(s)	65, 193
BlsI	GCNGC	2 cut(s)	66, 194
BmiI	GGNNCC	1 cut(s)	42
BsaAI	YACGTR	1 cut(s)	149
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	88
BshNI	GGYRCC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	86
Bso31I	GGTCTC	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	103
Bsp19I	CCATGG	1 cut(s)	96
BspACI	CCGC	4 cut(s)	38, 62, 65, 154
BspLI	GGNNCC	1 cut(s)	42
BspMAI	CTGCAG	1 cut(s)	12
BspPI	GGATC	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	103
BssSI	CACGAG	1 cut(s)	130
BssT1I	CCWWGG	1 cut(s)	96
Bst2BI	CACGAG	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	25
BstBAI	YACGTR	1 cut(s)	149
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	177
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 201
BstSFI	CTRYAG	1 cut(s)	8
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	177
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	3 cut(s)	29, 75, 204
CviKI_1	RGCY	3 cut(s)	29, 75, 204
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
EciI	GGCGGA	2 cut(s)	51, 143
Eco130I	CCWWGG	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	86
Eco72I	CACGTG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	1 cut(s)	100
FaiI	YATR	1 cut(s)	98
FatI	CATG	1 cut(s)	96
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	2 cut(s)	65, 193
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	2 cut(s)	65, 193
GluI	GCNGC	2 cut(s)	65, 193
Hin1II	CATG	1 cut(s)	100
HindIII	AAGCTT	1 cut(s)	73
HinfI	GANTC	2 cut(s)	49, 116
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	3 cut(s)	48, 71, 115
Hpy188III	TCNNGA	1 cut(s)	120
Hpy8I	GTNNAC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	2 cut(s)	57, 148
HpyCH4V	TGCA	2 cut(s)	10, 192
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 201
HpySE526I	ACGT	2 cut(s)	57, 148
Hsp92II	CATG	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	1 cut(s)	72
LpnPI	CCDG	2 cut(s)	133, 148
MaeII	ACGT	2 cut(s)	57, 148
MalI	GATC	1 cut(s)	105
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	1 cut(s)	103
MflI	RGATCY	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	2 cut(s)	93, 156
MnlI	CCTC	2 cut(s)	54, 94
MseI	TTAA	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	35, 201
NcoI	CCATGG	1 cut(s)	96
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	1 cut(s)	42
NmeAIII	GCCGAG	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	66, 194
PleI	GAGTC	1 cut(s)	43
PmaCI	CACGTG	1 cut(s)	149
PmlI	CACGTG	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	149
PspCI	CACGTG	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	42
PstI	CTGCAG	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	2 cut(s)	65, 193
Sau3AI	GATC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	43
SetI	ASST	5 cut(s)	60, 77, 128, 151, 206
SfcI	CTRYAG	1 cut(s)	8
SsiI	CCGC	4 cut(s)	38, 62, 65, 154
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	2 cut(s)	60, 151
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TseI	GCWGC	1 cut(s)	192
XmiI	GTMKAC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.