Rroxscaffold_4G00331330

histone methyltransferase activity (H3-K4 specific)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0010082
Physical Location & Seq
Forward (+)
65268351 .. 65268557
207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00331330.1

Sequence Viewer

Length: 207 bp
ATGTTTTTGCAGTTGTTTTTCACGGTGGCTTTCTCGGCGGTGCCTCTGACTCTTTACGTTCCGCCGCTCCGCAGCTTAAACCCGTTTGTGGAGACCATGGAGGATCTAATGTCGGAATCCAGAACCTACACGAATAGGGTCTACCCACGTGTCCGCCATATCTGGCGTAGGATCTTGGATTGTCTGCTTTGCAGCACCACCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

8.11

Weight (kDa)

9.38

Isoelectric Point (pI)

72.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 40
AccBSI CCGCTC 1 cut(s) 67
AccI GTMKAC 1 cut(s) 141
AciI CCGC 5 cut(s) 38, 62, 65, 70, 154
AclWI GGATC 2 cut(s) 111, 179
AcvI CACGTG 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 88
AflIII ACRYGT 1 cut(s) 148
AjnI CCWGG 1 cut(s) 200
AluBI AGCT 1 cut(s) 75
AluI AGCT 1 cut(s) 75
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 2 cut(s) 111, 179
ApeKI GCWGC 2 cut(s) 72, 192
BanI GGYRCC 1 cut(s) 40
BbrPI CACGTG 1 cut(s) 149
BbvI GCAGC 1 cut(s) 84
BciT130I CCWGG 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 86
BisI GCNGC 3 cut(s) 65, 73, 193
BlsI GCNGC 3 cut(s) 66, 74, 194
Bme1390I CCNGG 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 202
BsaAI YACGTR 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 202
BseDI CCNNGG 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 84
BshNI GGYRCC 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 1 cut(s) 86
Bso31I GGTCTC 1 cut(s) 86
Bsp143I GATC 2 cut(s) 103, 171
Bsp19I CCATGG 1 cut(s) 96
BspACI CCGC 5 cut(s) 38, 62, 65, 70, 154
BspLI GGNNCC 1 cut(s) 42
BspPI GGATC 2 cut(s) 111, 179
BspT107I GGYRCC 1 cut(s) 40
BspTNI GGTCTC 1 cut(s) 86
BsrBI CCGCTC 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 2 cut(s) 103, 171
BssT1I CCWWGG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 25
BstBAI YACGTR 1 cut(s) 149
BstDSI CCRYGG 1 cut(s) 96
BstKTI GATC 2 cut(s) 106, 174
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 2 cut(s) 103, 171
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 84
BstX2I RGATCY 2 cut(s) 103, 171
BstYI RGATCY 2 cut(s) 103, 171
BtgI CCRYGG 1 cut(s) 96
CsiI ACCWGGT 1 cut(s) 200
CviAII CATG 1 cut(s) 97
CviJI RGCY 2 cut(s) 29, 75
CviKI_1 RGCY 2 cut(s) 29, 75
DpnI GATC 2 cut(s) 105, 173
DpnII GATC 2 cut(s) 103, 171
EciI GGCGGA 2 cut(s) 51, 143
Eco130I CCWWGG 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 86
Eco72I CACGTG 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 1 cut(s) 100
FaiI YATR 2 cut(s) 98, 159
FatI CATG 1 cut(s) 96
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 3 cut(s) 65, 73, 193
Fsp4HI GCNGC 3 cut(s) 65, 73, 193
GluI GCNGC 3 cut(s) 65, 73, 193
Hin1II CATG 1 cut(s) 100
HinfI GANTC 2 cut(s) 49, 116
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 2 cut(s) 48, 115
Hpy188III TCNNGA 1 cut(s) 120
Hpy8I GTNNAC 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4IV ACGT 2 cut(s) 57, 148
HpyCH4V TGCA 2 cut(s) 10, 192
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpySE526I ACGT 2 cut(s) 57, 148
Hsp92II CATG 1 cut(s) 100
Kzo9I GATC 2 cut(s) 103, 171
LmnI GCTCC 1 cut(s) 72
LpnPI CCDG 3 cut(s) 133, 148, 187
Lsp1109I GCAGC 1 cut(s) 84
MabI ACCWGGT 1 cut(s) 200
MaeII ACGT 2 cut(s) 57, 148
MalI GATC 2 cut(s) 105, 173
MbiI CCGCTC 1 cut(s) 67
MboI GATC 2 cut(s) 103, 171
MflI RGATCY 2 cut(s) 103, 171
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 2 cut(s) 54, 94
MseI TTAA 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 202
MvaI CCWGG 1 cut(s) 202
MwoI GCNNNNNNNGC 1 cut(s) 35
NcoI CCATGG 1 cut(s) 96
NdeII GATC 2 cut(s) 103, 171
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 42
NmeAIII GCCGAG 1 cut(s) 14
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 3 cut(s) 66, 74, 194
PleI GAGTC 1 cut(s) 43
PmaCI CACGTG 1 cut(s) 149
PmlI CACGTG 1 cut(s) 149
PpsI GAGTC 1 cut(s) 43
Ppu21I YACGTR 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 200
PspCI CACGTG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 42
PsuI RGATCY 2 cut(s) 103, 171
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 3 cut(s) 65, 73, 193
Sau3AI GATC 2 cut(s) 103, 171
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 202
SetI ASST 5 cut(s) 60, 77, 128, 151, 206
SexAI ACCWGGT 1 cut(s) 200
SsiI CCGC 5 cut(s) 38, 62, 65, 70, 154
StyD4I CCNGG 1 cut(s) 200
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 25
TaiI ACGT 2 cut(s) 60, 151
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TseI GCWGC 2 cut(s) 72, 192
XmiI GTMKAC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.