Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007228

Physical Location & Seq

Genomic Coordinates Reverse (-)

20119140 .. 20121314

Gene Structure 2175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G54340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCGAGAGGGAAGATCCAGATCAAGAGGATAGAGAACCAGACAAACAGACAAGTGACGTATTCAAAGAGAAGAAATGGTTTATTCAAGAAAGCACATGAGCTCACGGTTTTGTGTGATGCTAGGGTTTCGATTATCATGTTCTCTAGCTCCAACAAGCTTCATGAGTATATCAGCCCTAACACCACAACGAAGGAGATCGTAGATCTGTACCAAACTATTTCTGATGTCGATGTTTGGGCCACTCAATATGAGCGAATGCAAGAAACCAAGAGGAAACTGTTGGAGACAAATAGAAATCTCCGGACTCAGATCAAGCAGAGGCTAGGTGAGTGTTTGGACGAGCTTGACATTCAGGAGCTGCGTCGTCTTGAGGATGAAATGGAAAACACTTTCAAACTCGTTCGCGAGCGCAAGTTCAAATCTCTTGGGAATCAGATCGAGACCACCAAGAAAAAGAACAAAAGTCAACAAGACATACAAAAGAATCTCATACATGAGCTGGAACTAAGAGCTGAAGATCCTCACTATGGACTAGTAGACAATGGAGGAGATTACGACTCAGTTCTTGGATACCAAATCGAAGGGTCACGTGCTTACGCTCTTCGTTTCCACCAGAACCATCACCACTATTACCCCAACCATGGCCTTCATGCACCCTCTGCCTCTGACATCATTACCTTCCATCTTCTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

232

Amino Acids

27.34

Weight (kDa)

8.71

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	2.6e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	81 - 168	8.7e-17	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54340
fragaria_vesca	FvH4_2g38970 FvH4_2g38970 FvH4_2g38970
malus_domestica	MD08G1021300.v1.1
prunus_persica	Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1
pyrus_communis	pycom08g01680
rosa_chinensis	RchiOBHm_Chr6g0302061
rosa_laevigata	RLG00000011198
rosa_multiflora	Rmu_ssc0000160.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166120
rosa_rugosa	Rorug06G0311600 Rorug06G0311700 Rorug06G0311800 Rorug06G0311900
rosa_samantha	Rh6AG424400 Rh6BG478100 Rh6CG437300
rosa_wichuraiana	Rw6G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	540
AccII	CGCG	1 cut(s)	408
AccIII	TCCGGA	1 cut(s)	303
AclWI	GGATC	2 cut(s)	10, 515
AcuI	CTGAAG	1 cut(s)	537
AcvI	CACGTG	1 cut(s)	593
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	530, 644
AgsI	TTSAA	5 cut(s)	66, 88, 397, 421, 695
AhlI	ACTAGT	1 cut(s)	535
AluBI	AGCT	7 cut(s)	103, 150, 160, 346, 361, 502, 515
AluI	AGCT	7 cut(s)	103, 150, 160, 346, 361, 502, 515
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	281, 437
AlwI	GGATC	2 cut(s)	10, 515
AlwNI	CAGNNNCTG	1 cut(s)	361
Aor13HI	TCCGGA	1 cut(s)	303
AoxI	GGCC	2 cut(s)	240, 646
ApeKI	GCWGC	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	240
AsuHPI	GGTGA	2 cut(s)	341, 617
BanII	GRGCYC	1 cut(s)	105
BbrPI	CACGTG	1 cut(s)	593
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	2 cut(s)	630, 693
BciVI	GTATCC	1 cut(s)	566
BcoDI	GTCTC	2 cut(s)	281, 437
BcuI	ACTAGT	1 cut(s)	535
BfaI	CTAG	4 cut(s)	123, 147, 326, 536
BfuI	GTATCC	1 cut(s)	566
BglII	AGATCT	1 cut(s)	205
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
BmgT120I	GGNCC	1 cut(s)	240
BmsI	GCATC	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	392
BsaAI	YACGTR	1 cut(s)	593
BsaBI	GATNNNNATC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	643
BsaWI	WCCGGW	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	2 cut(s)	530, 644
Bse8I	GATNNNNATC	1 cut(s)	20
BseAI	TCCGGA	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	643
BseGI	GGATG	1 cut(s)	382
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	530, 644
BseMII	CTCAG	2 cut(s)	323, 576
BseRI	GAGGAG	1 cut(s)	564
BseXI	GCAGC	1 cut(s)	348
Bsh1236I	CGCG	1 cut(s)	408
BshFI	GGCC	2 cut(s)	242, 648
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	304
BslI	CCNNNNNNNGG	2 cut(s)	530, 644
BsmAI	GTCTC	2 cut(s)	281, 437
BsmI	GAATGC	1 cut(s)	264
BsnI	GGCC	2 cut(s)	242, 648
Bso31I	GGTCTC	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp13I	TCCGGA	1 cut(s)	303
Bsp143I	GATC	7 cut(s)	15, 21, 198, 205, 312, 438, 520
Bsp19I	CCATGG	1 cut(s)	643
Bsp68I	TCGCGA	1 cut(s)	408
BspANI	GGCC	2 cut(s)	242, 648
BspCNI	CTCAG	2 cut(s)	322, 575
BspEI	TCCGGA	1 cut(s)	303
BspFNI	CGCG	1 cut(s)	408
BspHI	TCATGA	1 cut(s)	163
BspPI	GGATC	2 cut(s)	10, 515
BspQI	GCTCTTC	1 cut(s)	609
BspTNI	GGTCTC	1 cut(s)	437
BssECI	CCNNGG	1 cut(s)	643
BssMI	GATC	7 cut(s)	15, 21, 198, 205, 312, 438, 520
BssT1I	CCWWGG	1 cut(s)	643
Bst4CI	ACNGT	2 cut(s)	109, 282
Bst6I	CTCTTC	1 cut(s)	609
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstBAI	YACGTR	1 cut(s)	593
BstC8I	GCNNGC	1 cut(s)	410
BstDEI	CTNAG	3 cut(s)	309, 509, 562
BstDSI	CCRYGG	1 cut(s)	643
BstF5I	GGATG	1 cut(s)	382
BstFNI	CGCG	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	7 cut(s)	18, 24, 201, 208, 315, 441, 523
BstMAI	GTCTC	2 cut(s)	281, 437
BstMBI	GATC	7 cut(s)	15, 21, 198, 205, 312, 438, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	662
BstUI	CGCG	1 cut(s)	408
BstV1I	GCAGC	1 cut(s)	348
BstX2I	RGATCY	3 cut(s)	15, 205, 520
BstYI	RGATCY	3 cut(s)	15, 205, 520
BsuI	GTATCC	1 cut(s)	566
BsuRI	GGCC	2 cut(s)	242, 648
BtgI	CCRYGG	1 cut(s)	643
BtsCI	GGATG	1 cut(s)	382
BtuMI	TCGCGA	1 cut(s)	408
Cac8I	GCNNGC	1 cut(s)	410
CaiI	CAGNNNCTG	1 cut(s)	361
CciI	TCATGA	1 cut(s)	163
CfoI	GCGC	1 cut(s)	414
Cfr13I	GGNCC	1 cut(s)	240
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	6 cut(s)	98, 139, 164, 497, 644, 653
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	3 cut(s)	309, 509, 562
DpnI	GATC	7 cut(s)	17, 23, 200, 207, 314, 440, 522
DpnII	GATC	7 cut(s)	15, 21, 198, 205, 312, 438, 520
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	643
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	437
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	537
Eco72I	CACGTG	1 cut(s)	593
EcoICRI	GAGCTC	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	643
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	643
FaeI	CATG	6 cut(s)	101, 142, 167, 500, 647, 656
FatI	CATG	6 cut(s)	97, 138, 163, 496, 643, 652
FblI	GTMKAC	1 cut(s)	540
Fnu4HI	GCNGC	1 cut(s)	362
FokI	GGATG	1 cut(s)	389
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	362
FspBI	CTAG	4 cut(s)	123, 147, 326, 536
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	1 cut(s)	362
HaeIII	GGCC	2 cut(s)	242, 648
HapII	CCGG	1 cut(s)	304
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	1 cut(s)	414
Hin1II	CATG	6 cut(s)	101, 142, 167, 500, 647, 656
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HincII	GTYRAC	1 cut(s)	470
HindII	GTYRAC	1 cut(s)	470
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	4 cut(s)	307, 433, 487, 560
HpaII	CCGG	1 cut(s)	304
HphI	GGTGA	2 cut(s)	341, 617
Hpy166II	GTNNAC	2 cut(s)	470, 541
Hpy188I	TCNGA	4 cut(s)	226, 312, 438, 670
Hpy8I	GTNNAC	2 cut(s)	470, 541
Hpy99I	CGWCG	1 cut(s)	369
HpyAV	CCTTC	4 cut(s)	187, 578, 659, 691
HpyCH4III	ACNGT	2 cut(s)	109, 282
HpyCH4IV	ACGT	2 cut(s)	59, 592
HpyCH4V	TGCA	2 cut(s)	262, 656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	662
HpyF3I	CTNAG	3 cut(s)	309, 509, 562
HpySE526I	ACGT	2 cut(s)	59, 592
Hsp92II	CATG	6 cut(s)	101, 142, 167, 500, 647, 656
HspAI	GCGC	1 cut(s)	412
Kpn2I	TCCGGA	1 cut(s)	303
Kzo9I	GATC	7 cut(s)	15, 21, 198, 205, 312, 438, 520
LguI	GCTCTTC	1 cut(s)	609
LmnI	GCTCC	2 cut(s)	155, 358
LpnPI	CCDG	6 cut(s)	32, 53, 317, 341, 488, 629
Lsp1109I	GCAGC	1 cut(s)	348
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	4 cut(s)	123, 147, 326, 536
MaeII	ACGT	2 cut(s)	59, 592
MaeIII	GTNAC	2 cut(s)	55, 588
MalI	GATC	7 cut(s)	17, 23, 200, 207, 314, 440, 522
MboI	GATC	7 cut(s)	15, 21, 198, 205, 312, 438, 520
MboII	GAAGA	5 cut(s)	25, 84, 530, 596, 680
MflI	RGATCY	3 cut(s)	15, 205, 520
MhlI	GDGCHC	1 cut(s)	105
MlyI	GAGTC	2 cut(s)	301, 554
MmeI	TCCRAC	2 cut(s)	177, 264
MnlI	CCTC	8 cut(s)	21, 267, 315, 367, 534, 542, 670, 676
MroI	TCCGGA	1 cut(s)	303
MspI	CCGG	1 cut(s)	304
Mva1269I	GAATGC	1 cut(s)	264
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	1 cut(s)	662
NcoI	CCATGG	1 cut(s)	643
NdeII	GATC	7 cut(s)	15, 21, 198, 205, 312, 438, 520
NlaIII	CATG	6 cut(s)	101, 142, 167, 500, 647, 656
NmuCI	GTSAC	2 cut(s)	55, 588
NruI	TCGCGA	1 cut(s)	408
PagI	TCATGA	1 cut(s)	163
PciSI	GCTCTTC	1 cut(s)	609
PctI	GAATGC	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	433, 487
PkrI	GCNGC	1 cut(s)	363
PleI	GAGTC	2 cut(s)	301, 554
PmaCI	CACGTG	1 cut(s)	593
PmlI	CACGTG	1 cut(s)	593
PpsI	GAGTC	2 cut(s)	301, 554
Ppu21I	YACGTR	1 cut(s)	593
Psp124BI	GAGCTC	1 cut(s)	105
PspCI	CACGTG	1 cut(s)	593
PspPI	GGNCC	1 cut(s)	240
PstNI	CAGNNNCTG	1 cut(s)	361
PsuI	RGATCY	3 cut(s)	15, 205, 520
RruI	TCGCGA	1 cut(s)	408
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SacI	GAGCTC	1 cut(s)	105
SapI	GCTCTTC	1 cut(s)	609
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	7 cut(s)	15, 21, 198, 205, 312, 438, 520
Sau96I	GGNCC	1 cut(s)	240
SchI	GAGTC	2 cut(s)	301, 554
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
SpeI	ACTAGT	1 cut(s)	535
SspMI	CTAG	4 cut(s)	123, 147, 326, 536
SstI	GAGCTC	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	643
TaaI	ACNGT	2 cut(s)	109, 282
TaiI	ACGT	2 cut(s)	62, 595
TaqI	TCGA	4 cut(s)	131, 231, 441, 582
TfiI	GAWTC	2 cut(s)	433, 487
TseFI	GTSAC	2 cut(s)	55, 588
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	2 cut(s)	55, 588
TspDTI	ATGAA	3 cut(s)	152, 393, 641
XmiI	GTMKAC	1 cut(s)	540
XspI	CTAG	4 cut(s)	123, 147, 326, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.