Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007228

Physical Location & Seq

Genomic Coordinates Forward (+)

46313309 .. 46313938

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0311700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAACCACAAACCCAGCAACCAACCGATGATGGAGGAAGCAATAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCGGAGCAGGTGGACTCCCACTATAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTGTAGAGCAGGTTCAGAGGATCTATCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTATTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGAGGTCCACTTCGTATGTTCATGTGCCCATGCAAATATCAGGGCTTGTTGGTAATGGTAATGGTACCAATTGGAAACCTGAGGATCAGTATATTAACTTCGGATCTTCTGCATCTGCTTCTGCTTCTTCAGCTGGTGTGATTGCTTTTAACGGGCAGATAGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCAATGGAGGTGGCGGTCACGGTGGTGGCTCTTACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

209

Amino Acids

23.02

Weight (kDa)

9.32

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 89	2.4e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54340
fragaria_vesca	FvH4_2g38970 FvH4_2g38970 FvH4_2g38970
malus_domestica	MD08G1021300.v1.1
prunus_persica	Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1
pyrus_communis	pycom08g01680
rosa_chinensis	RchiOBHm_Chr6g0302061
rosa_laevigata	RLG00000011198
rosa_multiflora	Rmu_ssc0000160.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166120
rosa_rugosa	Rorug06G0311600 Rorug06G0311700 Rorug06G0311800 Rorug06G0311900
rosa_samantha	Rh6AG424400 Rh6BG478100 Rh6CG437300
rosa_wichuraiana	Rw6G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	78
Acc36I	ACCTGC	2 cut(s)	78, 160
Acc65I	GGTACC	1 cut(s)	335
AccB1I	GGYRCC	1 cut(s)	335
AccIII	TCCGGA	1 cut(s)	618
AciI	CCGC	2 cut(s)	82, 546
AclWI	GGATC	4 cut(s)	188, 363, 382, 460
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	2 cut(s)	203, 337
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	2 cut(s)	220, 473
AleI	CACNNNNGTG	1 cut(s)	555
AluBI	AGCT	6 cut(s)	130, 193, 404, 580, 605, 624
AluI	AGCT	6 cut(s)	130, 193, 404, 580, 605, 624
Alw21I	GWGCWC	1 cut(s)	582
AlwI	GGATC	4 cut(s)	188, 363, 382, 460
Ama87I	CYCGRG	1 cut(s)	255
Aor13HI	TCCGGA	1 cut(s)	618
ApeKI	GCWGC	2 cut(s)	50, 624
Asp700I	GAANNNNTTC	1 cut(s)	477
Asp718I	GGTACC	1 cut(s)	335
AspS9I	GGNCC	2 cut(s)	153, 276
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	512
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	2 cut(s)	153, 276
AxyI	CCTNAGG	1 cut(s)	351
BaeGI	GKGCMC	1 cut(s)	300
BanI	GGYRCC	1 cut(s)	335
BanII	GRGCYC	2 cut(s)	256, 582
BarI	GAAGNNNNNNTAC	2 cut(s)	353, 385
BbsI	GAAGAC	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	582
BbvI	GCAGC	2 cut(s)	62, 611
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	55
BfmI	CTRYAG	2 cut(s)	102, 162
BfuAI	ACCTGC	2 cut(s)	78, 160
BisI	GCNGC	2 cut(s)	51, 625
BlpI	GCTNAGC	1 cut(s)	581
BlsI	GCNGC	2 cut(s)	52, 626
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	2 cut(s)	153, 276
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	153, 276
BmiI	GGNNCC	3 cut(s)	6, 155, 337
BmrFI	CCNGG	1 cut(s)	55
BmsI	GCATC	1 cut(s)	392
BpiI	GAAGAC	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	173
Bpu1102I	GCTNAGC	1 cut(s)	581
BpuEI	CTTGAG	2 cut(s)	107, 596
BpuMI	CCSGG	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	116
BsaWI	WCCGGW	1 cut(s)	618
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse21I	CCTNAGG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	116
BseAI	TCCGGA	1 cut(s)	618
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMII	CTCAG	2 cut(s)	342, 595
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	2 cut(s)	62, 611
BseYI	CCCAGC	1 cut(s)	15
BshNI	GGYRCC	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	582
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	54, 619
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmFI	GGGAC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	3 cut(s)	256, 300, 582
Bsp13I	TCCGGA	1 cut(s)	618
Bsp143I	GATC	6 cut(s)	106, 180, 210, 355, 374, 452
Bsp1720I	GCTNAGC	1 cut(s)	581
BspACI	CCGC	2 cut(s)	82, 546
BspCNI	CTCAG	2 cut(s)	343, 594
BspEI	TCCGGA	1 cut(s)	618
BspLI	GGNNCC	3 cut(s)	6, 155, 337
BspMI	ACCTGC	2 cut(s)	78, 160
BspPI	GGATC	4 cut(s)	188, 363, 382, 460
BspT107I	GGYRCC	1 cut(s)	335
BssMI	GATC	6 cut(s)	106, 180, 210, 355, 374, 452
Bst4CI	ACNGT	2 cut(s)	163, 554
Bst6I	CTCTTC	1 cut(s)	266
BstDEI	CTNAG	2 cut(s)	351, 581
BstKTI	GATC	6 cut(s)	109, 183, 213, 358, 377, 455
BstMBI	GATC	6 cut(s)	106, 180, 210, 355, 374, 452
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 401, 591
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	2 cut(s)	102, 162
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	2 cut(s)	62, 611
BstV2I	GAAGAC	1 cut(s)	530
BstX2I	RGATCY	3 cut(s)	180, 374, 452
BstYI	RGATCY	3 cut(s)	180, 374, 452
Bsu36I	CCTNAGG	1 cut(s)	351
BveI	ACCTGC	2 cut(s)	78, 160
Cfr13I	GGNCC	2 cut(s)	153, 276
Csp6I	GTAC	2 cut(s)	202, 336
CspCI	CAANNNNNGTGG	2 cut(s)	523, 558
CviAII	CATG	7 cut(s)	70, 293, 301, 463, 493, 497, 520
CviQI	GTAC	2 cut(s)	202, 336
DdeI	CTNAG	2 cut(s)	351, 581
DpnI	GATC	6 cut(s)	108, 182, 212, 357, 376, 454
DpnII	GATC	6 cut(s)	106, 180, 210, 355, 374, 452
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	580
Eco24I	GRGCYC	2 cut(s)	256, 582
Eco47I	GGWCC	2 cut(s)	153, 276
Eco53kI	GAGCTC	1 cut(s)	580
Eco57I	CTGAAG	1 cut(s)	384
Eco81I	CCTNAGG	1 cut(s)	351
Eco88I	CYCGRG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	580
EcoO109I	RGGNCCY	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	498
EcoT38I	GRGCYC	2 cut(s)	256, 582
FaeI	CATG	7 cut(s)	73, 296, 304, 466, 496, 500, 523
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	7 cut(s)	69, 292, 300, 462, 492, 496, 519
Fnu4HI	GCNGC	2 cut(s)	51, 625
FriOI	GRGCYC	2 cut(s)	256, 582
Fsp4HI	GCNGC	2 cut(s)	51, 625
GluI	GCNGC	2 cut(s)	51, 625
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	173
HapII	CCGG	2 cut(s)	54, 619
Hin1II	CATG	7 cut(s)	73, 296, 304, 466, 496, 500, 523
HinfI	GANTC	2 cut(s)	94, 117
HpaII	CCGG	2 cut(s)	54, 619
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	3 cut(s)	93, 244, 279
Hpy188I	TCNGA	3 cut(s)	111, 177, 374
Hpy188III	TCNNGA	4 cut(s)	220, 241, 257, 619
Hpy8I	GTNNAC	3 cut(s)	93, 244, 279
HpyAV	CCTTC	1 cut(s)	488
HpyCH4III	ACNGT	2 cut(s)	163, 554
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	304, 383, 496
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 401, 591
HpyF3I	CTNAG	2 cut(s)	351, 581
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	7 cut(s)	73, 296, 304, 466, 496, 500, 523
Kpn2I	TCCGGA	1 cut(s)	618
KpnI	GGTACC	1 cut(s)	339
Kzo9I	GATC	6 cut(s)	106, 180, 210, 355, 374, 452
LmnI	GCTCC	3 cut(s)	84, 127, 621
Lsp1109I	GCAGC	2 cut(s)	62, 611
LweI	GCATC	1 cut(s)	392
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	548
MalI	GATC	6 cut(s)	108, 182, 212, 357, 376, 454
MboI	GATC	6 cut(s)	106, 180, 210, 355, 374, 452
MboII	GAAGA	5 cut(s)	280, 283, 369, 390, 535
MfeI	CAATTG	1 cut(s)	340
MflI	RGATCY	3 cut(s)	180, 374, 452
MhlI	GDGCHC	3 cut(s)	256, 300, 582
MluCI	AATT	1 cut(s)	340
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	9 cut(s)	29, 131, 171, 267, 346, 492, 496, 533, 589
Mph1103I	ATGCAT	1 cut(s)	498
MroI	TCCGGA	1 cut(s)	618
MroXI	GAANNNNTTC	1 cut(s)	477
MseI	TTAA	2 cut(s)	366, 420
MslI	CAYNNNNRTG	1 cut(s)	555
MspA1I	CMGCKG	2 cut(s)	193, 404
MspI	CCGG	2 cut(s)	54, 619
MspR9I	CCNGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	340
MwoI	GCNNNNNNNGC	3 cut(s)	79, 401, 591
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	6 cut(s)	106, 180, 210, 355, 374, 452
NlaIII	CATG	7 cut(s)	73, 296, 304, 466, 496, 500, 523
NlaIV	GGNNCC	3 cut(s)	6, 155, 337
NmuCI	GTSAC	1 cut(s)	548
NsiI	ATGCAT	1 cut(s)	498
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	555
PaqCI	CACCTGC	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	52, 626
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	582
Psp5II	RGGWCCY	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	6, 155, 337
PspPI	GGNCC	2 cut(s)	153, 276
PspPPI	RGGWCCY	1 cut(s)	153
PsrI	GAACNNNNNNTAC	2 cut(s)	156, 188
PsuI	RGATCY	3 cut(s)	180, 374, 452
PvuII	CAGCTG	2 cut(s)	193, 404
RsaI	GTAC	2 cut(s)	203, 337
RsaNI	GTAC	2 cut(s)	202, 336
RseI	CAYNNNNRTG	1 cut(s)	555
SacI	GAGCTC	1 cut(s)	582
SaqAI	TTAA	2 cut(s)	366, 420
SatI	GCNGC	2 cut(s)	51, 625
Sau3AI	GATC	6 cut(s)	106, 180, 210, 355, 374, 452
Sau96I	GGNCC	2 cut(s)	153, 276
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	3 cut(s)	256, 300, 582
SfaNI	GCATC	1 cut(s)	392
SfcI	CTRYAG	2 cut(s)	102, 162
SinI	GGWCC	2 cut(s)	153, 276
SmiMI	CAYNNNNRTG	1 cut(s)	555
SmlI	CTYRAG	2 cut(s)	122, 575
SmoI	CTYRAG	2 cut(s)	122, 575
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	2 cut(s)	82, 546
SstI	GAGCTC	1 cut(s)	582
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	2 cut(s)	163, 554
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	213
TasI	AATT	1 cut(s)	340
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	2 cut(s)	366, 420
Tru9I	TTAA	2 cut(s)	366, 420
TseFI	GTSAC	1 cut(s)	548
TseI	GCWGC	2 cut(s)	50, 624
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	3 cut(s)	281, 473, 536
VpaK11BI	GGWCC	2 cut(s)	153, 276
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	477
Zsp2I	ATGCAT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.