Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007228

Physical Location & Seq

Genomic Coordinates Forward (+)

46335168 .. 46335638

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0311900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGGTGTTCTTAATGTTATTGGAGTTACAGCAGTTCTACTGCTATTTTTCATAAGCATGCACTTGTCCGAGGCTGGCAGGGTGTTGCATGACGAGGAAGAAAACTCGAAGAAGAACAAACTTTTTGTTTTAATGGAGTCGAAGCAGAAGGGTGATCCCCCTTCTGGTGGACCTAATGGACACACCGGCAAGCCTGGTCCTACGACTCCTGCTAGTGGTCATGATGCTTCAACCATTAACCAAAGAAACTTTGCAGGCCACACCACTGTAGAAAACTTGACGAAGAACAAACTTTTCGTTTTAATGGAGCCGAAGCAGAAGGGTGTTCCCCCTCCCGGTGGGCCTAATCCGACCACCAACAAGCCTGGTCCTAAGCCTCCTCCTAGTGGTCATGCTGCTTCAACCATTAACCAAAGAAACTTTGCAGGCCTCCTCCATATGCGTACCCTAACTTCAGGTTTCCAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

156

Amino Acids

16.61

Weight (kDa)

9.79

Isoelectric Point (pI)

31.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54340
fragaria_vesca	FvH4_2g38970 FvH4_2g38970 FvH4_2g38970
malus_domestica	MD08G1021300.v1.1
prunus_persica	Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1
pyrus_communis	pycom08g01680
rosa_chinensis	RchiOBHm_Chr6g0302061
rosa_laevigata	RLG00000011198
rosa_multiflora	Rmu_ssc0000160.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166120
rosa_rugosa	Rorug06G0311600 Rorug06G0311700 Rorug06G0311800 Rorug06G0311900
rosa_samantha	Rh6AG424400 Rh6BG478100 Rh6CG437300
rosa_wichuraiana	Rw6G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	2 cut(s)	445, 467
AfiI	CCNNNNNNNGG	6 cut(s)	164, 167, 215, 335, 338, 386
AgsI	TTSAA	2 cut(s)	231, 402
AjnI	CCWGG	2 cut(s)	193, 364
AlwI	GGATC	1 cut(s)	149
AoxI	GGCC	3 cut(s)	256, 341, 427
ApeKI	GCWGC	1 cut(s)	395
AspS9I	GGNCC	4 cut(s)	170, 197, 341, 368
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	3 cut(s)	170, 197, 368
BarI	GAAGNNNNNNTAC	2 cut(s)	436, 468
BbvI	GCAGC	1 cut(s)	382
BciT130I	CCWGG	2 cut(s)	195, 366
BcnI	CCSGG	1 cut(s)	336
BfaI	CTAG	2 cut(s)	213, 384
BfmI	CTRYAG	1 cut(s)	267
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
BmcAI	AGTACT	1 cut(s)	467
Bme1390I	CCNGG	3 cut(s)	195, 336, 366
Bme18I	GGWCC	3 cut(s)	170, 197, 368
BmgT120I	GGNCC	4 cut(s)	170, 197, 341, 368
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	3 cut(s)	195, 336, 366
BmsI	GCATC	1 cut(s)	214
Bpu10I	CCTNAGC	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	6 cut(s)	164, 167, 215, 335, 338, 386
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	463
BseBI	CCWGG	2 cut(s)	195, 366
BseDI	CCNNGG	1 cut(s)	69
BseLI	CCNNNNNNNGG	6 cut(s)	164, 167, 215, 335, 338, 386
BseNI	ACTGG	1 cut(s)	463
BseRI	GAGGAG	2 cut(s)	369, 422
BseXI	GCAGC	1 cut(s)	382
BshFI	GGCC	3 cut(s)	258, 343, 429
BsiSI	CCGG	2 cut(s)	186, 336
BslI	CCNNNNNNNGG	6 cut(s)	164, 167, 215, 335, 338, 386
BsnI	GGCC	3 cut(s)	258, 343, 429
Bsp143I	GATC	1 cut(s)	154
BspANI	GGCC	3 cut(s)	258, 343, 429
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	1 cut(s)	149
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	463
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	1 cut(s)	154
Bst2UI	CCWGG	2 cut(s)	195, 366
Bst4CI	ACNGT	1 cut(s)	268
BstC8I	GCNNGC	5 cut(s)	59, 76, 191, 256, 427
BstDEI	CTNAG	1 cut(s)	372
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstNI	CCWGG	2 cut(s)	195, 366
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	3 cut(s)	193, 334, 364
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	382
BsuRI	GGCC	3 cut(s)	258, 343, 429
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	5 cut(s)	59, 76, 191, 256, 427
CciI	TCATGA	1 cut(s)	220
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	4 cut(s)	170, 197, 341, 368
Csp6I	GTAC	2 cut(s)	444, 466
CviAII	CATG	4 cut(s)	58, 89, 221, 392
CviJI	RGCY	8 cut(s)	74, 193, 258, 310, 343, 364, 376, 429
CviKI_1	RGCY	8 cut(s)	74, 193, 258, 310, 343, 364, 376, 429
CviQI	GTAC	2 cut(s)	444, 466
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
Eco147I	AGGCCT	1 cut(s)	429
Eco47I	GGWCC	3 cut(s)	170, 197, 368
Eco57I	CTGAAG	1 cut(s)	438
EcoRII	CCWGG	2 cut(s)	193, 364
FaeI	CATG	4 cut(s)	61, 92, 224, 395
FaiI	YATR	7 cut(s)	53, 59, 90, 222, 393, 438, 440
FatI	CATG	4 cut(s)	57, 88, 220, 391
FauNDI	CATATG	1 cut(s)	438
Fnu4HI	GCNGC	1 cut(s)	396
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	2 cut(s)	213, 384
GluI	GCNGC	1 cut(s)	396
HaeIII	GGCC	3 cut(s)	258, 343, 429
HapII	CCGG	2 cut(s)	186, 336
Hin1II	CATG	4 cut(s)	61, 92, 224, 395
HinfI	GANTC	2 cut(s)	137, 205
HpaII	CCGG	2 cut(s)	186, 336
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	2 cut(s)	70, 351
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	1 cut(s)	170
HpyAV	CCTTC	3 cut(s)	142, 171, 313
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	4 cut(s)	61, 88, 254, 425
HpyF3I	CTNAG	1 cut(s)	372
Hsp92II	CATG	4 cut(s)	61, 92, 224, 395
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	307
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	2 cut(s)	213, 384
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	4 cut(s)	110, 121, 124, 295
MlyI	GAGTC	2 cut(s)	146, 199
MmeI	TCCRAC	1 cut(s)	374
MnlI	CCTC	7 cut(s)	64, 88, 342, 387, 390, 440, 443
MseI	TTAA	5 cut(s)	12, 131, 237, 302, 408
MslI	CAYNNNNRTG	1 cut(s)	56
MspI	CCGG	2 cut(s)	186, 336
MspR9I	CCNGG	3 cut(s)	195, 336, 366
MvaI	CCWGG	2 cut(s)	195, 366
NciI	CCSGG	1 cut(s)	336
NdeI	CATATG	1 cut(s)	438
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	4 cut(s)	61, 92, 224, 395
NlaIV	GGNNCC	1 cut(s)	309
NspI	RCATGY	1 cut(s)	61
PaeI	GCATGC	1 cut(s)	61
PagI	TCATGA	1 cut(s)	220
PceI	AGGCCT	1 cut(s)	429
PkrI	GCNGC	1 cut(s)	397
PleI	GAGTC	2 cut(s)	145, 199
PpsI	GAGTC	2 cut(s)	145, 199
Psp6I	CCWGG	2 cut(s)	193, 364
PspGI	CCWGG	2 cut(s)	193, 364
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	4 cut(s)	170, 197, 341, 368
RsaI	GTAC	2 cut(s)	445, 467
RsaNI	GTAC	2 cut(s)	444, 466
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	5 cut(s)	12, 131, 237, 302, 408
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	4 cut(s)	170, 197, 341, 368
ScaI	AGTACT	1 cut(s)	467
SchI	GAGTC	2 cut(s)	146, 199
ScrFI	CCNGG	3 cut(s)	195, 336, 366
SetI	ASST	2 cut(s)	175, 460
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	267
SinI	GGWCC	3 cut(s)	170, 197, 368
SmiMI	CAYNNNNRTG	1 cut(s)	56
SphI	GCATGC	1 cut(s)	61
SseBI	AGGCCT	1 cut(s)	429
SspMI	CTAG	2 cut(s)	213, 384
StuI	AGGCCT	1 cut(s)	429
StyD4I	CCNGG	3 cut(s)	193, 334, 364
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	2 cut(s)	107, 140
TatI	WGTACW	1 cut(s)	465
Tru1I	TTAA	5 cut(s)	12, 131, 237, 302, 408
Tru9I	TTAA	5 cut(s)	12, 131, 237, 302, 408
TscAI	CASTG	1 cut(s)	271
TseI	GCWGC	1 cut(s)	395
TspDTI	ATGAA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	271
VpaK11BI	GGWCC	3 cut(s)	170, 197, 368
XceI	RCATGY	1 cut(s)	61
XspI	CTAG	2 cut(s)	213, 384
ZrmI	AGTACT	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.