Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007228

Physical Location & Seq

Genomic Coordinates Reverse (-)

33846657 .. 33849629

Gene Structure 2973 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G371300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCGAGGGGTAAGATCCAGATCAAGAGGATAGAGAACGCGACCAATAGGCAGGTGACCTATTCCAAGAGAAGGAACGGGCTCTTCAAGAAGGCCCATGAGCTCACTGTTCTCTGCGATGCCACTGTTTCTCTCATCATGGTTTCAAATTCCGGAAAAATCCATGAATACATCAGCCCCTCCACCACAACAAAGCAATTTTTCGACCAGTTCCAGAAGACTAAGGGAGTCGATATTTGGAGCTCGCACTATGAGGCAATGCAAGAGCATTTGAAGAAGCTGAAAGAGGTGAATAGGAGGCTGCGGAAGCAGATCAGGCAAAGGGTACTAGGTGAATGTTTGAACGATATGAGTTTTGATGAACTGCGTGGTGTTGAGCAAGAAATGGAAGGCGCTGTTGAAGTTATTCGCAAGCGCAAGGTTATTCGAATGATCTCTAACCAGATTGATACTACGAAGAAAAAGCTACGGAGTGCAACAGAAATGAATAGGAATCTCCGTGAATTTGATGCAAGGGACGACCCACATTATGGATTAGTTAAGAATGGAAGAGAGGATTATGAATCTGCTTTTGGCTACTCATCAAATGGAGGCCCTCGCATATTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

204

Amino Acids

23.63

Weight (kDa)

9.83

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54340
fragaria_vesca	FvH4_2g38970 FvH4_2g38970 FvH4_2g38970
malus_domestica	MD08G1021300.v1.1
prunus_persica	Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1
pyrus_communis	pycom08g01680
rosa_chinensis	RchiOBHm_Chr6g0302061
rosa_laevigata	RLG00000011198
rosa_multiflora	Rmu_ssc0000160.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166120
rosa_rugosa	Rorug06G0311600 Rorug06G0311700 Rorug06G0311800 Rorug06G0311900
rosa_samantha	Rh6AG424400 Rh6BG478100 Rh6CG437300
rosa_wichuraiana	Rw6G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccB7I	CCANNNNNTGG	1 cut(s)	530
AccII	CGCG	1 cut(s)	41
AccIII	TCCGGA	1 cut(s)	152
AciI	CCGC	1 cut(s)	304
AclWI	GGATC	1 cut(s)	10
AcsI	RAATTY	2 cut(s)	148, 503
AfaI	GTAC	1 cut(s)	327
AfiI	CCNNNNNNNGG	2 cut(s)	72, 530
AgsI	TTSAA	5 cut(s)	88, 147, 274, 343, 401
AjuI	GAANNNNNNNTTGG	2 cut(s)	555, 587
AluBI	AGCT	4 cut(s)	103, 243, 280, 466
AluI	AGCT	4 cut(s)	103, 243, 280, 466
Alw21I	GWGCWC	2 cut(s)	105, 245
AlwI	GGATC	1 cut(s)	10
Aor13HI	TCCGGA	1 cut(s)	152
AoxI	GGCC	2 cut(s)	93, 592
ApeKI	GCWGC	1 cut(s)	301
ApoI	RAATTY	2 cut(s)	148, 503
Asp700I	GAANNNNTTC	1 cut(s)	405
AspLEI	GCGC	2 cut(s)	395, 417
AspS9I	GGNCC	2 cut(s)	94, 593
AsuHPI	GGTGA	3 cut(s)	67, 301, 344
AsuII	TTCGAA	1 cut(s)	427
BanII	GRGCYC	3 cut(s)	84, 105, 245
BbsI	GAAGAC	1 cut(s)	224
Bbv12I	GWGCWC	2 cut(s)	105, 245
BbvI	GCAGC	1 cut(s)	288
BfaI	CTAG	1 cut(s)	329
BfoI	RGCGCY	1 cut(s)	396
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	303
BmgT120I	GGNCC	2 cut(s)	94, 593
BmsI	GCATC	2 cut(s)	109, 499
BpiI	GAAGAC	1 cut(s)	224
Bpu14I	TTCGAA	1 cut(s)	427
BsaBI	GATNNNNATC	1 cut(s)	20
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 530
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	20
BseAI	TCCGGA	1 cut(s)	152
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	72, 530
BseMI	GCAATG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	288
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	2 cut(s)	95, 594
BsiHKAI	GWGCWC	2 cut(s)	105, 245
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	530
BslI	CCNNNNNNNGG	2 cut(s)	72, 530
BsmFI	GGGAC	1 cut(s)	530
BsnI	GGCC	2 cut(s)	95, 594
Bsp119I	TTCGAA	1 cut(s)	427
Bsp1286I	GDGCHC	3 cut(s)	84, 105, 245
Bsp13I	TCCGGA	1 cut(s)	152
Bsp143I	GATC	4 cut(s)	15, 21, 312, 432
BspACI	CCGC	1 cut(s)	304
BspANI	GGCC	2 cut(s)	95, 594
BspEI	TCCGGA	1 cut(s)	152
BspFNI	CGCG	1 cut(s)	41
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	10
BspQI	GCTCTTC	1 cut(s)	89
BspT104I	TTCGAA	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	208
BssMI	GATC	4 cut(s)	15, 21, 312, 432
Bst4CI	ACNGT	2 cut(s)	109, 127
Bst6I	CTCTTC	2 cut(s)	89, 544
BstBI	TTCGAA	1 cut(s)	427
BstC8I	GCNNGC	2 cut(s)	245, 413
BstDEI	CTNAG	1 cut(s)	222
BstEII	GGTNACC	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	41
BstH2I	RGCGCY	1 cut(s)	396
BstHHI	GCGC	2 cut(s)	395, 417
BstKTI	GATC	4 cut(s)	18, 24, 315, 435
BstMBI	GATC	4 cut(s)	15, 21, 312, 432
BstMWI	GCNNNNNNNGC	2 cut(s)	307, 316
BstPI	GGTNACC	1 cut(s)	55
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	288
BstV2I	GAAGAC	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
BsuRI	GGCC	2 cut(s)	95, 594
BtgZI	GCGATG	1 cut(s)	132
BtsIMutI	CAGTG	2 cut(s)	105, 123
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	245, 413
CfoI	GCGC	2 cut(s)	395, 417
Cfr13I	GGNCC	2 cut(s)	94, 593
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	3 cut(s)	98, 139, 164
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	4 cut(s)	17, 23, 314, 434
DpnII	GATC	4 cut(s)	15, 21, 312, 432
Eam1104I	CTCTTC	2 cut(s)	89, 544
EarI	CTCTTC	2 cut(s)	89, 544
Ecl136II	GAGCTC	2 cut(s)	103, 243
Eco24I	GRGCYC	3 cut(s)	84, 105, 245
Eco53kI	GAGCTC	2 cut(s)	103, 243
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	2 cut(s)	103, 243
EcoO109I	RGGNCCY	1 cut(s)	593
EcoO65I	GGTNACC	1 cut(s)	55
EcoT38I	GRGCYC	3 cut(s)	84, 105, 245
FaeI	CATG	3 cut(s)	101, 142, 167
FaiI	YATR	8 cut(s)	99, 140, 165, 252, 350, 531, 561, 602
FaqI	GGGAC	1 cut(s)	530
FatI	CATG	3 cut(s)	97, 138, 163
Fnu4HI	GCNGC	1 cut(s)	302
FriOI	GRGCYC	3 cut(s)	84, 105, 245
Fsp4HI	GCNGC	1 cut(s)	302
FspBI	CTAG	1 cut(s)	329
GlaI	GCGC	2 cut(s)	394, 416
GluI	GCNGC	1 cut(s)	302
HaeII	RGCGCY	1 cut(s)	396
HaeIII	GGCC	2 cut(s)	95, 594
HapII	CCGG	1 cut(s)	153
HhaI	GCGC	2 cut(s)	395, 417
Hin1II	CATG	3 cut(s)	101, 142, 167
Hin6I	GCGC	2 cut(s)	393, 415
HinP1I	GCGC	2 cut(s)	393, 415
HinfI	GANTC	3 cut(s)	228, 493, 563
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	3 cut(s)	67, 301, 344
Hpy188III	TCNNGA	5 cut(s)	19, 25, 88, 153, 214
HpyAV	CCTTC	3 cut(s)	66, 85, 383
HpyCH4III	ACNGT	2 cut(s)	109, 127
HpyCH4V	TGCA	3 cut(s)	262, 476, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	307, 316
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	101, 142, 167
HspAI	GCGC	2 cut(s)	393, 415
Kpn2I	TCCGGA	1 cut(s)	152
Kzo9I	GATC	4 cut(s)	15, 21, 312, 432
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	1 cut(s)	240
LpnPI	CCDG	7 cut(s)	32, 38, 166, 221, 227, 301, 455
Lsp1109I	GCAGC	1 cut(s)	288
LweI	GCATC	2 cut(s)	109, 499
MaeI	CTAG	1 cut(s)	329
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	4 cut(s)	17, 23, 314, 434
MboI	GATC	4 cut(s)	15, 21, 312, 432
MboII	GAAGA	5 cut(s)	76, 229, 286, 469, 561
MflI	RGATCY	1 cut(s)	15
MhlI	GDGCHC	3 cut(s)	84, 105, 245
MluCI	AATT	3 cut(s)	148, 197, 503
MlyI	GAGTC	1 cut(s)	237
MnlI	CCTC	8 cut(s)	21, 190, 247, 280, 291, 547, 584, 606
MroI	TCCGGA	1 cut(s)	152
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	2 cut(s)	540, 610
MspI	CCGG	1 cut(s)	153
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	307, 316
NdeII	GATC	4 cut(s)	15, 21, 312, 432
NlaIII	CATG	3 cut(s)	101, 142, 167
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	427
PaqCI	CACCTGC	1 cut(s)	43
PciSI	GCTCTTC	1 cut(s)	89
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	2 cut(s)	493, 563
PflMI	CCANNNNNTGG	1 cut(s)	530
PkrI	GCNGC	1 cut(s)	303
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
Psp124BI	GAGCTC	2 cut(s)	105, 245
PspEI	GGTNACC	1 cut(s)	55
PspPI	GGNCC	2 cut(s)	94, 593
PsuI	RGATCY	1 cut(s)	15
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
SacI	GAGCTC	2 cut(s)	105, 245
SapI	GCTCTTC	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	540, 610
SatI	GCNGC	1 cut(s)	302
Sau3AI	GATC	4 cut(s)	15, 21, 312, 432
Sau96I	GGNCC	2 cut(s)	94, 593
SchI	GAGTC	1 cut(s)	237
SduI	GDGCHC	3 cut(s)	84, 105, 245
SetI	ASST	9 cut(s)	57, 62, 105, 245, 282, 291, 334, 423, 468
SfaNI	GCATC	2 cut(s)	109, 499
SfuI	TTCGAA	1 cut(s)	427
Sse9I	AATT	3 cut(s)	148, 197, 503
SsiI	CCGC	1 cut(s)	304
SspMI	CTAG	1 cut(s)	329
SstI	GAGCTC	2 cut(s)	105, 245
TaaI	ACNGT	2 cut(s)	109, 127
TaqI	TCGA	3 cut(s)	204, 231, 427
TasI	AATT	3 cut(s)	148, 197, 503
TfiI	GAWTC	2 cut(s)	493, 563
Tru1I	TTAA	2 cut(s)	540, 610
Tru9I	TTAA	2 cut(s)	540, 610
TscAI	CASTG	2 cut(s)	112, 130
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	301
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	180, 375, 500, 576
TspGWI	ACGGA	2 cut(s)	484, 488
TspRI	CASTG	2 cut(s)	112, 130
Van91I	CCANNNNNTGG	1 cut(s)	530
XapI	RAATTY	2 cut(s)	148, 503
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.