Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007228

Physical Location & Seq

Genomic Coordinates Reverse (-)

68420226 .. 68423042

Gene Structure 2817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG478100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCGAGAGGTAAGATCCAGATCAAGAGGATAGAGAACGTGACGAATAGGCAGGTCACCTACTCCAAGAGAAGGAACGGCCTCTTCAAGAAGGCCAATGAGCTCACTGTTCTCTGTGATGCTAAGGTTTCTCTCCTCATGGTTTCCTCTTCCGGAAAGCTTCATGAATTCATCAGCCCCTCCACCACGACAAAGCAAGTGTACGATGAGTACCAGAAGCTCCTCGGAATTGACCTTTGGAAATCGCACTATGAGACAATGCAAGAAAATTTGAAGAAGCTGAAAGAGATAAATAAGAGTCTTAGGAGGCAGATCAGCCACAGGGTGGGCGAGTGTTTGAACGATCTGAGATTCGCTGAACTGCACAGTCTTGAGAAAGAAATGGAAAGCGCTGTAGAAGTTGTTCGTAATCGCAAGGTTGTATATATATATCATTGCTCCTCGATCTCTTGGTGTCCAGTGATCTATAAATCAATTTATTGGATGAATATCAAGAACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

167

Amino Acids

19.71

Weight (kDa)

9.61

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	2.4e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	81 - 140	1.5e-14	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54340
fragaria_vesca	FvH4_2g38970 FvH4_2g38970 FvH4_2g38970
malus_domestica	MD08G1021300.v1.1
prunus_persica	Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1
pyrus_communis	pycom08g01680
rosa_chinensis	RchiOBHm_Chr6g0302061
rosa_laevigata	RLG00000011198
rosa_multiflora	Rmu_ssc0000160.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166120
rosa_rugosa	Rorug06G0311600 Rorug06G0311700 Rorug06G0311800 Rorug06G0311900
rosa_samantha	Rh6AG424400 Rh6BG478100 Rh6CG437300
rosa_wichuraiana	Rw6G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccIII	TCCGGA	1 cut(s)	152
AclWI	GGATC	1 cut(s)	10
AcsI	RAATTY	2 cut(s)	167, 268
AdeI	CACNNNGTG	1 cut(s)	325
AfaI	GTAC	2 cut(s)	203, 212
AfeI	AGCGCT	1 cut(s)	391
AfiI	CCNNNNNNNGG	2 cut(s)	72, 325
AgsI	TTSAA	3 cut(s)	88, 274, 340
AjuI	GAANNNNNNNTTGG	2 cut(s)	220, 252
AluBI	AGCT	4 cut(s)	103, 160, 220, 280
AluI	AGCT	4 cut(s)	103, 160, 220, 280
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	10
Aor13HI	TCCGGA	1 cut(s)	152
Aor51HI	AGCGCT	1 cut(s)	391
AoxI	GGCC	2 cut(s)	79, 93
ApoI	RAATTY	2 cut(s)	167, 268
Asp700I	GAANNNNTTC	1 cut(s)	402
AspLEI	GCGC	1 cut(s)	392
AsuHPI	GGTGA	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BceAI	ACGGC	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	393
BfoI	RGCGCY	1 cut(s)	393
BfuAI	ACCTGC	1 cut(s)	43
BmsI	GCATC	1 cut(s)	109
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	392
BsaBI	GATNNNNATC	2 cut(s)	20, 488
BsaJI	CCNNGG	1 cut(s)	223
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 325
Bse1I	ACTGG	1 cut(s)	458
Bse3DI	GCAATG	1 cut(s)	433
Bse8I	GATNNNNATC	2 cut(s)	20, 488
BseAI	TCCGGA	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	1 cut(s)	489
BseJI	GATNNNNATC	2 cut(s)	20, 488
BseLI	CCNNNNNNNGG	2 cut(s)	72, 325
BseMI	GCAATG	1 cut(s)	433
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	458
BseRI	GAGGAG	3 cut(s)	125, 212, 430
BsgI	GTGCAG	1 cut(s)	347
BshFI	GGCC	2 cut(s)	81, 95
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	72, 325
BsmAI	GTCTC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	81, 95
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp13I	TCCGGA	1 cut(s)	152
Bsp143I	GATC	6 cut(s)	15, 21, 312, 343, 444, 462
BspANI	GGCC	2 cut(s)	81, 95
BspCNI	CTCAG	1 cut(s)	339
BspEI	TCCGGA	1 cut(s)	152
BspHI	TCATGA	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	458
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	6 cut(s)	15, 21, 312, 343, 444, 462
Bst4CI	ACNGT	2 cut(s)	109, 368
Bst6I	CTCTTC	2 cut(s)	89, 154
BstDEI	CTNAG	3 cut(s)	123, 302, 347
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	489
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	6 cut(s)	18, 24, 315, 346, 447, 465
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	6 cut(s)	15, 21, 312, 343, 444, 462
BstPI	GGTNACC	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	393
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
BsuRI	GGCC	2 cut(s)	81, 95
BtsCI	GGATG	1 cut(s)	489
BtsIMutI	CAGTG	2 cut(s)	105, 465
BveI	ACCTGC	1 cut(s)	43
CciI	TCATGA	1 cut(s)	163
CfoI	GCGC	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	202, 211
CviAII	CATG	2 cut(s)	139, 164
CviJI	RGCY	8 cut(s)	81, 95, 103, 160, 177, 220, 280, 318
CviKI_1	RGCY	8 cut(s)	81, 95, 103, 160, 177, 220, 280, 318
CviQI	GTAC	2 cut(s)	202, 211
DdeI	CTNAG	3 cut(s)	123, 302, 347
DpnI	GATC	6 cut(s)	17, 23, 314, 345, 446, 464
DpnII	GATC	6 cut(s)	15, 21, 312, 343, 444, 462
DraIII	CACNNNGTG	1 cut(s)	325
Eam1104I	CTCTTC	2 cut(s)	89, 154
EarI	CTCTTC	2 cut(s)	89, 154
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco47III	AGCGCT	1 cut(s)	391
Eco53kI	GAGCTC	1 cut(s)	103
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	167
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	2 cut(s)	142, 167
FaiI	YATR	8 cut(s)	140, 165, 252, 424, 426, 428, 430, 468
FatI	CATG	2 cut(s)	138, 163
FokI	GGATG	1 cut(s)	496
FriOI	GRGCYC	1 cut(s)	105
GlaI	GCGC	1 cut(s)	391
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	2 cut(s)	81, 95
HapII	CCGG	1 cut(s)	153
HhaI	GCGC	1 cut(s)	392
Hin1II	CATG	2 cut(s)	142, 167
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	2 cut(s)	298, 351
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	2 cut(s)	227, 348
Hpy188III	TCNNGA	7 cut(s)	19, 25, 88, 153, 164, 371, 493
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	2 cut(s)	66, 85
HpyCH4III	ACNGT	2 cut(s)	109, 368
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	2 cut(s)	262, 364
HpyF3I	CTNAG	3 cut(s)	123, 302, 347
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	142, 167
HspAI	GCGC	1 cut(s)	390
Kpn2I	TCCGGA	1 cut(s)	152
Kzo9I	GATC	6 cut(s)	15, 21, 312, 343, 444, 462
LmnI	GCTCC	2 cut(s)	225, 443
LpnPI	CCDG	6 cut(s)	32, 38, 166, 227, 307, 471
LweI	GCATC	1 cut(s)	109
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	40, 55
MalI	GATC	6 cut(s)	17, 23, 314, 345, 446, 464
MboI	GATC	6 cut(s)	15, 21, 312, 343, 444, 462
MboII	GAAGA	3 cut(s)	76, 141, 286
MflI	RGATCY	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	4 cut(s)	167, 228, 268, 474
MlyI	GAGTC	1 cut(s)	307
MnlI	CCTC	8 cut(s)	21, 92, 146, 157, 190, 233, 300, 451
MroI	TCCGGA	1 cut(s)	152
MroXI	GAANNNNTTC	1 cut(s)	402
MspI	CCGG	1 cut(s)	153
NdeII	GATC	6 cut(s)	15, 21, 312, 343, 444, 462
NlaIII	CATG	2 cut(s)	142, 167
NmuCI	GTSAC	2 cut(s)	40, 55
PagI	TCATGA	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	351
PflMI	CCANNNNNTGG	1 cut(s)	325
PleI	GAGTC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	306
Psp124BI	GAGCTC	1 cut(s)	105
PspEI	GGTNACC	1 cut(s)	55
PsrI	GAACNNNNNNTAC	2 cut(s)	387, 419
PsuI	RGATCY	1 cut(s)	15
RsaI	GTAC	2 cut(s)	203, 212
RsaNI	GTAC	2 cut(s)	202, 211
SacI	GAGCTC	1 cut(s)	105
Sau3AI	GATC	6 cut(s)	15, 21, 312, 343, 444, 462
SchI	GAGTC	1 cut(s)	307
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	1 cut(s)	393
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	4 cut(s)	167, 228, 268, 474
SstI	GAGCTC	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	109, 368
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	443
TasI	AATT	4 cut(s)	167, 228, 268, 474
TfiI	GAWTC	1 cut(s)	351
TscAI	CASTG	2 cut(s)	112, 465
TseFI	GTSAC	2 cut(s)	40, 55
Tsp45I	GTSAC	2 cut(s)	40, 55
TspDTI	ATGAA	4 cut(s)	152, 160, 180, 500
TspRI	CASTG	2 cut(s)	112, 465
Van91I	CCANNNNNTGG	1 cut(s)	325
XapI	RAATTY	2 cut(s)	167, 268
XmnI	GAANNNNTTC	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.