Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0007228

Physical Location & Seq

Genomic Coordinates Forward (+)

61170850 .. 61173388

Gene Structure 2539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G036750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCGAGAGGTAAGATCCAGATCAAGAGGATAGAGAACGTGACGAATAGGCAGGTCACCTACTCCAAGAGAAGGAACGGCCTCTTCAAGAAGGCCAATGAGCTCACTGTTCTCTGTGATGCTAAGGTGTCTCTCCTCATGGTTTCCTCTTCCGGAAAGCTTCATGAATTCATCAGCCCTCCACCACGTACGACAAAGCAAGTGTACGATGAGTACCAGAAGCTCCTCGGAATTGACCTTTGGAAATCGCACTATGAGACAATGCAAGAAAATTTGAACAAGCTGAAAGAGATAAATAAGAGTCTTAGGAGGCAGATCAGCCACAGGGTGGGCGAGTGTTTGAACGATCTGAGATTCGCTGAACTGCACAGTCTTGAGAAAGAAATGGAAAGCGCTGTAGAAGTTGTTCGTAATCGCAAGCTGAAGCTGATCTCCAATCAGATTGATACCAAGAGGAAAAAGGATGCAATGGAGGAACCGCACTACGGATTGGTTGACGATGGAGGAGATTATTATGATTCTGCAGTCATTGGCTACTCAGCAAATGAAGACCCTCACAATGTATTTCCCTTCAGGCTGCAACCTTCTCATCATCCTAATCTTCACCACGGAGGAGGAAGTTCAGATCTTACGACCTACTCTTTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

216

Amino Acids

24.86

Weight (kDa)

9.07

Isoelectric Point (pI)

49.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	3.8e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	82 - 157	5.3e-18	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54340
fragaria_vesca	FvH4_2g38970 FvH4_2g38970 FvH4_2g38970
malus_domestica	MD08G1021300.v1.1
prunus_persica	Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1
pyrus_communis	pycom08g01680
rosa_chinensis	RchiOBHm_Chr6g0302061
rosa_laevigata	RLG00000011198
rosa_multiflora	Rmu_ssc0000160.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166120
rosa_rugosa	Rorug06G0311600 Rorug06G0311700 Rorug06G0311800 Rorug06G0311900
rosa_samantha	Rh6AG424400 Rh6BG478100 Rh6CG437300
rosa_wichuraiana	Rw6G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccIII	TCCGGA	1 cut(s)	152
AciI	CCGC	1 cut(s)	479
AclWI	GGATC	1 cut(s)	10
AcsI	RAATTY	2 cut(s)	167, 271
AcuI	CTGAAG	2 cut(s)	443, 556
AdeI	CACNNNGTG	1 cut(s)	328
AfaI	GTAC	3 cut(s)	190, 206, 215
AfeI	AGCGCT	1 cut(s)	394
AfiI	CCNNNNNNNGG	3 cut(s)	72, 328, 485
AgsI	TTSAA	3 cut(s)	88, 277, 343
AjuI	GAANNNNNNNTTGG	2 cut(s)	223, 255
AluBI	AGCT	6 cut(s)	103, 160, 223, 283, 421, 427
AluI	AGCT	6 cut(s)	103, 160, 223, 283, 421, 427
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	135, 251
AlwI	GGATC	1 cut(s)	10
Aor13HI	TCCGGA	1 cut(s)	152
Aor51HI	AGCGCT	1 cut(s)	394
AoxI	GGCC	2 cut(s)	79, 93
ApeKI	GCWGC	1 cut(s)	577
ApoI	RAATTY	2 cut(s)	167, 271
ArsI	GACNNNNNNTTYG	1 cut(s)	625
Asp700I	GAANNNNTTC	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	395
AsuHPI	GGTGA	2 cut(s)	49, 596
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	555
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	564
BccI	CCATC	1 cut(s)	494
BceAI	ACGGC	1 cut(s)	94
BcoDI	GTCTC	2 cut(s)	135, 251
BfmI	CTRYAG	2 cut(s)	396, 522
BfoI	RGCGCY	1 cut(s)	396
BfuAI	ACCTGC	1 cut(s)	43
BglII	AGATCT	1 cut(s)	625
BisI	GCNGC	1 cut(s)	578
BlsI	GCNGC	1 cut(s)	579
BmiI	GGNNCC	1 cut(s)	477
BmsI	GCATC	2 cut(s)	109, 454
BpiI	GAAGAC	1 cut(s)	555
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	395
BsaAI	YACGTR	1 cut(s)	188
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	226, 607
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 328, 485
Bse3DI	GCAATG	1 cut(s)	474
Bse8I	GATNNNNATC	1 cut(s)	20
BseAI	TCCGGA	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	226, 607
BseGI	GGATG	2 cut(s)	469, 592
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	3 cut(s)	72, 328, 485
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	2 cut(s)	341, 552
BseRI	GAGGAG	4 cut(s)	125, 215, 519, 627
BseXI	GCAGC	1 cut(s)	564
BsgI	GTGCAG	1 cut(s)	350
BshFI	GGCC	2 cut(s)	81, 95
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	153
BsiWI	CGTACG	1 cut(s)	188
BslI	CCNNNNNNNGG	3 cut(s)	72, 328, 485
BsmAI	GTCTC	2 cut(s)	135, 251
BsnI	GGCC	2 cut(s)	81, 95
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp13I	TCCGGA	1 cut(s)	152
Bsp143I	GATC	6 cut(s)	15, 21, 315, 346, 429, 625
BspACI	CCGC	1 cut(s)	479
BspANI	GGCC	2 cut(s)	81, 95
BspCNI	CTCAG	2 cut(s)	342, 551
BspEI	TCCGGA	1 cut(s)	152
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	477
BspMAI	CTGCAG	1 cut(s)	526
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	474
BssECI	CCNNGG	2 cut(s)	226, 607
BssMI	GATC	6 cut(s)	15, 21, 315, 346, 429, 625
Bst4CI	ACNGT	2 cut(s)	109, 371
Bst6I	CTCTTC	2 cut(s)	89, 154
BstBAI	YACGTR	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	419
BstDEI	CTNAG	4 cut(s)	123, 305, 350, 538
BstDSI	CCRYGG	1 cut(s)	607
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	469, 592
BstH2I	RGCGCY	1 cut(s)	396
BstHHI	GCGC	1 cut(s)	395
BstKTI	GATC	6 cut(s)	18, 24, 318, 349, 432, 628
BstMAI	GTCTC	2 cut(s)	135, 251
BstMBI	GATC	6 cut(s)	15, 21, 315, 346, 429, 625
BstPI	GGTNACC	1 cut(s)	55
BstSFI	CTRYAG	2 cut(s)	396, 522
BstV1I	GCAGC	1 cut(s)	564
BstV2I	GAAGAC	1 cut(s)	555
BstX2I	RGATCY	2 cut(s)	15, 625
BstYI	RGATCY	2 cut(s)	15, 625
BsuRI	GGCC	2 cut(s)	81, 95
BtgI	CCRYGG	1 cut(s)	607
BtsCI	GGATG	2 cut(s)	469, 592
BtsIMutI	CAGTG	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	419
CciI	TCATGA	1 cut(s)	163
CfoI	GCGC	1 cut(s)	395
Csp6I	GTAC	3 cut(s)	189, 205, 214
CviAII	CATG	2 cut(s)	139, 164
CviQI	GTAC	3 cut(s)	189, 205, 214
DdeI	CTNAG	4 cut(s)	123, 305, 350, 538
DpnI	GATC	6 cut(s)	17, 23, 317, 348, 431, 627
DpnII	GATC	6 cut(s)	15, 21, 315, 346, 429, 625
DraIII	CACNNNGTG	1 cut(s)	328
Eam1104I	CTCTTC	2 cut(s)	89, 154
EarI	CTCTTC	2 cut(s)	89, 154
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco47III	AGCGCT	1 cut(s)	394
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	443, 556
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	167
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	2 cut(s)	142, 167
FaiI	YATR	4 cut(s)	140, 165, 255, 516
FatI	CATG	2 cut(s)	138, 163
Fnu4HI	GCNGC	1 cut(s)	578
FokI	GGATG	2 cut(s)	476, 579
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	578
GlaI	GCGC	1 cut(s)	394
GluI	GCNGC	1 cut(s)	578
HaeII	RGCGCY	1 cut(s)	396
HaeIII	GGCC	2 cut(s)	81, 95
HapII	CCGG	1 cut(s)	153
HhaI	GCGC	1 cut(s)	395
Hin1II	CATG	2 cut(s)	142, 167
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	3 cut(s)	301, 354, 518
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	2 cut(s)	49, 596
Hpy166II	GTNNAC	2 cut(s)	205, 496
Hpy188I	TCNGA	4 cut(s)	230, 351, 441, 625
Hpy188III	TCNNGA	6 cut(s)	19, 25, 88, 153, 164, 374
Hpy8I	GTNNAC	2 cut(s)	205, 496
HpyAV	CCTTC	4 cut(s)	66, 85, 580, 594
HpyCH4III	ACNGT	2 cut(s)	109, 371
HpyCH4IV	ACGT	2 cut(s)	39, 187
HpyCH4V	TGCA	5 cut(s)	265, 367, 467, 524, 580
HpyF3I	CTNAG	4 cut(s)	123, 305, 350, 538
HpySE526I	ACGT	2 cut(s)	39, 187
Hsp92II	CATG	2 cut(s)	142, 167
HspAI	GCGC	1 cut(s)	393
Kpn2I	TCCGGA	1 cut(s)	152
Kzo9I	GATC	6 cut(s)	15, 21, 315, 346, 429, 625
LmnI	GCTCC	1 cut(s)	228
LpnPI	CCDG	6 cut(s)	32, 38, 166, 230, 310, 559
Lsp1109I	GCAGC	1 cut(s)	564
LweI	GCATC	2 cut(s)	109, 454
MaeII	ACGT	2 cut(s)	39, 187
MaeIII	GTNAC	2 cut(s)	40, 55
MalI	GATC	6 cut(s)	17, 23, 317, 348, 431, 627
MboI	GATC	6 cut(s)	15, 21, 315, 346, 429, 625
MboII	GAAGA	4 cut(s)	76, 141, 560, 593
MflI	RGATCY	2 cut(s)	15, 625
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	3 cut(s)	167, 231, 271
MlyI	GAGTC	1 cut(s)	310
MroI	TCCGGA	1 cut(s)	152
MroXI	GAANNNNTTC	1 cut(s)	405
MspI	CCGG	1 cut(s)	153
NdeII	GATC	6 cut(s)	15, 21, 315, 346, 429, 625
NlaIII	CATG	2 cut(s)	142, 167
NlaIV	GGNNCC	1 cut(s)	477
NmuCI	GTSAC	2 cut(s)	40, 55
PagI	TCATGA	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	2 cut(s)	354, 518
Pfl23II	CGTACG	1 cut(s)	188
PflMI	CCANNNNNTGG	1 cut(s)	328
PkrI	GCNGC	1 cut(s)	579
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
Ppu21I	YACGTR	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	105
PspEI	GGTNACC	1 cut(s)	55
PspLI	CGTACG	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	477
PsrI	GAACNNNNNNTAC	2 cut(s)	390, 422
PstI	CTGCAG	1 cut(s)	526
PsuI	RGATCY	2 cut(s)	15, 625
RsaI	GTAC	3 cut(s)	190, 206, 215
RsaNI	GTAC	3 cut(s)	189, 205, 214
SacI	GAGCTC	1 cut(s)	105
SatI	GCNGC	1 cut(s)	578
Sau3AI	GATC	6 cut(s)	15, 21, 315, 346, 429, 625
SchI	GAGTC	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	2 cut(s)	109, 454
SfcI	CTRYAG	2 cut(s)	396, 522
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	3 cut(s)	167, 231, 271
SsiI	CCGC	1 cut(s)	479
SstI	GAGCTC	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	109, 371
TaiI	ACGT	2 cut(s)	42, 190
TasI	AATT	3 cut(s)	167, 231, 271
TfiI	GAWTC	2 cut(s)	354, 518
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	2 cut(s)	40, 55
TseI	GCWGC	1 cut(s)	577
Tsp45I	GTSAC	2 cut(s)	40, 55
TspDTI	ATGAA	4 cut(s)	152, 160, 180, 561
TspGWI	ACGGA	2 cut(s)	501, 624
TspRI	CASTG	1 cut(s)	112
Van91I	CCANNNNNTGG	1 cut(s)	328
XapI	RAATTY	2 cut(s)	167, 271
XmnI	GAANNNNTTC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.