Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000160.1

Orthogroup ID

OG0007228

Physical Location & Seq

Genomic Coordinates Forward (+)

24230 .. 26862

Gene Structure 2633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000160.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atggaggaaaccaagactaacctaacaggtctctcctcgatcttcgagtctcttagattgccagttacatcaaaacggaaacggggactattctcaaggtcagaaagtgtagtgatcgtggtgtatatcggtcccccacgcacatcgaaatgcgagccaaggaaaggaaaggaaaggaaaggaaaggaaagcaagactgacatatccccacgtttagcttccacgtctatatgtgaatggccaatccacaaaccccttccattcttgatcggattggaatcgaagctgaagaaaatggcgagaggtaagatccagatcaagaggatagagaacgtgacgaataggcaggtcacctactccaagagaaggaacggcctcttcaagaaggccaatgagctcactgttctctgtgatgctaaggtttctctcctcatggtttcctcttccggaaagcttcatgaattcatcagcccctccaccacgacaaagcaagtgtacgatgactaccagaagctcctcggaattgacctttggaaatctcactatgagacaatgcaagaaaatttgaacaagctgaaagagataaataagagtcttaggaggcagatcagccacagggtgggcgagtgtttgaacgatctgagattcgctgaactgcacagtcttgagaaagaaatggaaagcgctgtagaagttgttcgtaatcgcaagctgaagctgatctccaatcagattgataccaagaggaaaaagattcggaatgcaacagagtgcaacaggagactctatgaatatgatgcaatggaggaaccgcactacggattggttgacgatggaggagattattatgattctgcagtcattggctactcagcaaatgaagaccctcacaatgtatttcccttcaggctgcaaccttctcatcatcctaatcttcaccacggaggaggaagttcagatcttacgacctactctttgctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

327

Amino Acids

37.49

Weight (kDa)

9.53

Isoelectric Point (pI)

51.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54340
fragaria_vesca	FvH4_2g38970 FvH4_2g38970 FvH4_2g38970
malus_domestica	MD08G1021300.v1.1
prunus_persica	Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1
pyrus_communis	pycom08g01680
rosa_chinensis	RchiOBHm_Chr6g0302061
rosa_laevigata	RLG00000011198
rosa_multiflora	Rmu_ssc0000160.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166120
rosa_rugosa	Rorug06G0311600 Rorug06G0311700 Rorug06G0311800 Rorug06G0311900
rosa_samantha	Rh6AG424400 Rh6BG478100 Rh6CG437300
rosa_wichuraiana	Rw6G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	337
AccB7I	CCANNNNNTGG	1 cut(s)	619
AccIII	TCCGGA	1 cut(s)	446
AciI	CCGC	1 cut(s)	812
AclWI	GGATC	1 cut(s)	304
AcoI	YGGCCR	1 cut(s)	239
AcsI	RAATTY	2 cut(s)	461, 562
AcuI	CTGAAG	3 cut(s)	308, 734, 889
AdeI	CACNNNGTG	1 cut(s)	619
AfaI	GTAC	1 cut(s)	497
AfeI	AGCGCT	1 cut(s)	685
AfiI	CCNNNNNNNGG	4 cut(s)	164, 366, 619, 818
AgsI	TTSAA	3 cut(s)	382, 568, 634
AjiI	CACGTC	1 cut(s)	225
AjuI	GAANNNNNNNTTGG	2 cut(s)	514, 546
AluBI	AGCT	8 cut(s)	218, 286, 397, 454, 514, 574, 712, 718
AluI	AGCT	8 cut(s)	218, 286, 397, 454, 514, 574, 712, 718
Alw21I	GWGCWC	1 cut(s)	399
Alw26I	GTCTC	4 cut(s)	35, 54, 542, 775
AlwI	GGATC	1 cut(s)	304
Aor13HI	TCCGGA	1 cut(s)	446
Aor51HI	AGCGCT	1 cut(s)	685
AoxI	GGCC	3 cut(s)	239, 373, 387
ApeKI	GCWGC	1 cut(s)	910
ApoI	RAATTY	2 cut(s)	461, 562
ArsI	GACNNNNNNTTYG	1 cut(s)	958
Asp700I	GAANNNNTTC	1 cut(s)	696
AspLEI	GCGC	1 cut(s)	686
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	343, 929
AvaII	GGWCC	1 cut(s)	131
BalI	TGGCCA	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	399
BbsI	GAAGAC	1 cut(s)	888
Bbv12I	GWGCWC	1 cut(s)	399
BbvI	GCAGC	1 cut(s)	897
BccI	CCATC	1 cut(s)	827
BceAI	ACGGC	1 cut(s)	388
BcoDI	GTCTC	4 cut(s)	35, 54, 542, 775
BfmI	CTRYAG	2 cut(s)	687, 855
BfoI	RGCGCY	1 cut(s)	687
BfuAI	ACCTGC	1 cut(s)	337
BglII	AGATCT	1 cut(s)	958
BisI	GCNGC	1 cut(s)	911
BlsI	GCNGC	1 cut(s)	912
Bme18I	GGWCC	1 cut(s)	131
BmgBI	CACGTC	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	133, 810
BmsI	GCATC	2 cut(s)	403, 787
BpiI	GAAGAC	1 cut(s)	888
Bpu10I	CCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	2 cut(s)	79, 686
BsaBI	GATNNNNATC	2 cut(s)	277, 314
BsaI	GGTCTC	1 cut(s)	35
BsaJI	CCNNGG	3 cut(s)	158, 517, 940
BsaWI	WCCGGW	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	4 cut(s)	164, 366, 619, 818
Bse1I	ACTGG	1 cut(s)	62
Bse3DI	GCAATG	1 cut(s)	807
Bse8I	GATNNNNATC	2 cut(s)	277, 314
BseAI	TCCGGA	1 cut(s)	446
BseDI	CCNNGG	3 cut(s)	158, 517, 940
BseGI	GGATG	1 cut(s)	925
BseJI	GATNNNNATC	2 cut(s)	277, 314
BseLI	CCNNNNNNNGG	4 cut(s)	164, 366, 619, 818
BseMI	GCAATG	1 cut(s)	807
BseMII	CTCAG	2 cut(s)	632, 885
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	5 cut(s)	25, 419, 506, 852, 960
BseXI	GCAGC	1 cut(s)	897
BsgI	GTGCAG	1 cut(s)	641
BshFI	GGCC	3 cut(s)	241, 375, 389
BsiHKAI	GWGCWC	1 cut(s)	399
BsiSI	CCGG	1 cut(s)	447
BslFI	GGGAC	2 cut(s)	99, 117
BslI	CCNNNNNNNGG	4 cut(s)	164, 366, 619, 818
BsmAI	GTCTC	4 cut(s)	35, 54, 542, 775
BsmFI	GGGAC	2 cut(s)	99, 117
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	3 cut(s)	241, 375, 389
Bso31I	GGTCTC	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp13I	TCCGGA	1 cut(s)	446
Bsp143I	GATC	9 cut(s)	39, 114, 267, 309, 315, 606, 637, 720, 958
BspACI	CCGC	1 cut(s)	812
BspANI	GGCC	3 cut(s)	241, 375, 389
BspCNI	CTCAG	2 cut(s)	633, 884
BspEI	TCCGGA	1 cut(s)	446
BspHI	TCATGA	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	133, 810
BspMAI	CTGCAG	1 cut(s)	859
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	1 cut(s)	304
BspTNI	GGTCTC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	807
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	3 cut(s)	158, 517, 940
BssMI	GATC	9 cut(s)	39, 114, 267, 309, 315, 606, 637, 720, 958
BssT1I	CCWWGG	1 cut(s)	158
Bst4CI	ACNGT	2 cut(s)	403, 662
Bst6I	CTCTTC	2 cut(s)	383, 448
BstC8I	GCNNGC	2 cut(s)	155, 710
BstDEI	CTNAG	5 cut(s)	53, 417, 596, 641, 871
BstDSI	CCRYGG	1 cut(s)	940
BstEII	GGTNACC	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	925
BstH2I	RGCGCY	1 cut(s)	687
BstHHI	GCGC	1 cut(s)	686
BstKTI	GATC	9 cut(s)	42, 117, 270, 312, 318, 609, 640, 723, 961
BstMAI	GTCTC	4 cut(s)	35, 54, 542, 775
BstMBI	GATC	9 cut(s)	39, 114, 267, 309, 315, 606, 637, 720, 958
BstPI	GGTNACC	1 cut(s)	349
BstSFI	CTRYAG	2 cut(s)	687, 855
BstV1I	GCAGC	1 cut(s)	897
BstV2I	GAAGAC	1 cut(s)	888
BstX2I	RGATCY	2 cut(s)	309, 958
BstYI	RGATCY	2 cut(s)	309, 958
BsuRI	GGCC	3 cut(s)	241, 375, 389
BtgI	CCRYGG	1 cut(s)	940
BtrI	CACGTC	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	925
BtsIMutI	CAGTG	1 cut(s)	399
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	155, 710
CciI	TCATGA	1 cut(s)	457
CfoI	GCGC	1 cut(s)	686
Cfr13I	GGNCC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	496
CviAII	CATG	2 cut(s)	433, 458
CviQI	GTAC	1 cut(s)	496
DdeI	CTNAG	5 cut(s)	53, 417, 596, 641, 871
DpnI	GATC	9 cut(s)	41, 116, 269, 311, 317, 608, 639, 722, 960
DpnII	GATC	9 cut(s)	39, 114, 267, 309, 315, 606, 637, 720, 958
DraIII	CACNNNGTG	1 cut(s)	619
EaeI	YGGCCR	1 cut(s)	239
Eam1104I	CTCTTC	2 cut(s)	383, 448
EarI	CTCTTC	2 cut(s)	383, 448
Ecl136II	GAGCTC	1 cut(s)	397
Eco130I	CCWWGG	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	131
Eco47III	AGCGCT	1 cut(s)	685
Eco53kI	GAGCTC	1 cut(s)	397
Eco57I	CTGAAG	3 cut(s)	308, 734, 889
Eco91I	GGTNACC	1 cut(s)	349
EcoICRI	GAGCTC	1 cut(s)	397
EcoO65I	GGTNACC	1 cut(s)	349
EcoRI	GAATTC	1 cut(s)	461
EcoT14I	CCWWGG	1 cut(s)	158
EcoT38I	GRGCYC	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	158
FaeI	CATG	2 cut(s)	436, 461
FaqI	GGGAC	2 cut(s)	99, 117
FatI	CATG	2 cut(s)	432, 457
Fnu4HI	GCNGC	1 cut(s)	911
FokI	GGATG	1 cut(s)	912
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	1 cut(s)	911
GlaI	GCGC	1 cut(s)	685
GluI	GCNGC	1 cut(s)	911
HaeII	RGCGCY	1 cut(s)	687
HaeIII	GGCC	3 cut(s)	241, 375, 389
HapII	CCGG	1 cut(s)	447
HhaI	GCGC	1 cut(s)	686
Hin1II	CATG	2 cut(s)	436, 461
Hin6I	GCGC	1 cut(s)	684
HinP1I	GCGC	1 cut(s)	684
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	7 cut(s)	47, 278, 592, 645, 754, 783, 851
HpaII	CCGG	1 cut(s)	447
HphI	GGTGA	2 cut(s)	343, 929
Hpy166II	GTNNAC	2 cut(s)	496, 829
Hpy188I	TCNGA	7 cut(s)	103, 272, 521, 642, 732, 759, 958
Hpy188III	TCNNGA	7 cut(s)	265, 313, 319, 382, 447, 458, 665
Hpy8I	GTNNAC	2 cut(s)	496, 829
HpyAV	CCTTC	5 cut(s)	266, 360, 379, 913, 927
HpyCH4III	ACNGT	2 cut(s)	403, 662
HpyCH4IV	ACGT	3 cut(s)	211, 224, 333
HpyCH4V	TGCA	7 cut(s)	556, 658, 764, 774, 800, 857, 913
HpyF3I	CTNAG	5 cut(s)	53, 417, 596, 641, 871
HpySE526I	ACGT	3 cut(s)	211, 224, 333
Hsp92II	CATG	2 cut(s)	436, 461
HspAI	GCGC	1 cut(s)	684
Kpn2I	TCCGGA	1 cut(s)	446
Kzo9I	GATC	9 cut(s)	39, 114, 267, 309, 315, 606, 637, 720, 958
LmnI	GCTCC	1 cut(s)	519
LpnPI	CCDG	9 cut(s)	12, 75, 326, 332, 460, 521, 601, 763, 892
Lsp1109I	GCAGC	1 cut(s)	897
LweI	GCATC	2 cut(s)	403, 787
MaeII	ACGT	3 cut(s)	211, 224, 333
MaeIII	GTNAC	3 cut(s)	64, 334, 349
MalI	GATC	9 cut(s)	41, 116, 269, 311, 317, 608, 639, 722, 960
MboI	GATC	9 cut(s)	39, 114, 267, 309, 315, 606, 637, 720, 958
MboII	GAAGA	6 cut(s)	34, 301, 370, 435, 893, 926
MflI	RGATCY	2 cut(s)	309, 958
MhlI	GDGCHC	1 cut(s)	399
MlsI	TGGCCA	1 cut(s)	241
MluCI	AATT	3 cut(s)	461, 522, 562
MluNI	TGGCCA	1 cut(s)	241
MlyI	GAGTC	3 cut(s)	56, 601, 777
Mox20I	TGGCCA	1 cut(s)	241
MroI	TCCGGA	1 cut(s)	446
MroXI	GAANNNNTTC	1 cut(s)	696
MscI	TGGCCA	1 cut(s)	241
MslI	CAYNNNNRTG	1 cut(s)	148
Msp20I	TGGCCA	1 cut(s)	241
MspI	CCGG	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	766
NdeII	GATC	9 cut(s)	39, 114, 267, 309, 315, 606, 637, 720, 958
NlaIII	CATG	2 cut(s)	436, 461
NlaIV	GGNNCC	2 cut(s)	133, 810
NmuCI	GTSAC	2 cut(s)	334, 349
PagI	TCATGA	1 cut(s)	457
PctI	GAATGC	1 cut(s)	766
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	4 cut(s)	278, 645, 754, 851
PflMI	CCANNNNNTGG	1 cut(s)	619
PkrI	GCNGC	1 cut(s)	912
PleI	GAGTC	3 cut(s)	55, 600, 777
PpsI	GAGTC	3 cut(s)	55, 600, 777
Psp124BI	GAGCTC	1 cut(s)	399
PspEI	GGTNACC	1 cut(s)	349
PspN4I	GGNNCC	2 cut(s)	133, 810
PspPI	GGNCC	1 cut(s)	131
PsrI	GAACNNNNNNTAC	2 cut(s)	681, 713
PstI	CTGCAG	1 cut(s)	859
PsuI	RGATCY	2 cut(s)	309, 958
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
RseI	CAYNNNNRTG	1 cut(s)	148
SacI	GAGCTC	1 cut(s)	399
SatI	GCNGC	1 cut(s)	911
Sau3AI	GATC	9 cut(s)	39, 114, 267, 309, 315, 606, 637, 720, 958
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	3 cut(s)	56, 601, 777
SduI	GDGCHC	1 cut(s)	399
SfaNI	GCATC	2 cut(s)	403, 787
SfcI	CTRYAG	2 cut(s)	687, 855
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	148
SmlI	CTYRAG	2 cut(s)	94, 665
SmoI	CTYRAG	2 cut(s)	94, 665
Sse9I	AATT	3 cut(s)	461, 522, 562
SsiI	CCGC	1 cut(s)	812
SstI	GAGCTC	1 cut(s)	399
StyI	CCWWGG	1 cut(s)	158
TaaI	ACNGT	2 cut(s)	403, 662
TaiI	ACGT	3 cut(s)	214, 227, 336
TaqI	TCGA	4 cut(s)	38, 45, 146, 281
TaqII	GACCGA	1 cut(s)	119
TasI	AATT	3 cut(s)	461, 522, 562
TfiI	GAWTC	4 cut(s)	278, 645, 754, 851
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	2 cut(s)	334, 349
TseI	GCWGC	1 cut(s)	910
Tsp45I	GTSAC	2 cut(s)	334, 349
TspDTI	ATGAA	5 cut(s)	446, 454, 474, 804, 894
TspGWI	ACGGA	3 cut(s)	91, 834, 957
TspRI	CASTG	1 cut(s)	406
Van91I	CCANNNNNTGG	1 cut(s)	619
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	2 cut(s)	461, 562
XmnI	GAANNNNTTC	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.