Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007228

Physical Location & Seq

Genomic Coordinates Forward (+)

46325432 .. 46326216

Gene Structure 785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0311800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGCGGCCGCCAAGGTGATGAAGAAGGTGGAGATCGAACATCCGGGTGCCGCTGAAGCAAATCATGATTCGGTGGAAGCTGAGCAGCCTCTGCCTCCTCCCCACTCTCTCTTACGACGACGATTCCGACTCCTCCTCCCCCGACTCTTCCACCCACCACACCCCCTCCAGGTTCTTAGCGGTCTACAATACCAAATTTTACTACAGTGTGCTAAATGGCAGGAGGATTTTGTCAGAGCACAAGAAGTGAAGAAAGGGAGAGCTGGTGTGCTGTCGAACAGGGAGGTGCAGCGGTCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

100

Amino Acids

11.35

Weight (kDa)

9.89

Isoelectric Point (pI)

59.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54340
fragaria_vesca	FvH4_2g38970 FvH4_2g38970 FvH4_2g38970
malus_domestica	MD08G1021300.v1.1
prunus_persica	Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1
pyrus_communis	pycom08g01680
rosa_chinensis	RchiOBHm_Chr6g0302061
rosa_laevigata	RLG00000011198
rosa_multiflora	Rmu_ssc0000160.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166120
rosa_rugosa	Rorug06G0311600 Rorug06G0311700 Rorug06G0311800 Rorug06G0311900
rosa_samantha	Rh6AG424400 Rh6BG478100 Rh6CG437300
rosa_wichuraiana	Rw6G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	47
AccI	GTMKAC	1 cut(s)	184
AciI	CCGC	5 cut(s)	5, 9, 51, 180, 292
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	75
AfiI	CCNNNNNNNGG	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	2 cut(s)	80, 263
AluI	AGCT	2 cut(s)	80, 263
Alw21I	GWGCWC	1 cut(s)	241
AlwNI	CAGNNNCTG	1 cut(s)	91
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	85, 289
ApoI	RAATTY	1 cut(s)	195
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	170
BcnI	CCSGG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	203
BisI	GCNGC	5 cut(s)	6, 9, 51, 86, 290
BlpI	GCTNAGC	1 cut(s)	81
BlsI	GCNGC	5 cut(s)	7, 10, 52, 87, 291
Bme1390I	CCNGG	2 cut(s)	45, 170
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	2 cut(s)	45, 170
BpmI	CTGGAG	1 cut(s)	152
Bpu1102I	GCTNAGC	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	12
BsaXI	ACNNNNNCTCC	6 cut(s)	120, 150, 150, 180, 250, 280
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	72
BseRI	GAGGAG	3 cut(s)	87, 122, 125
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	1 cut(s)	97
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	47
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	169
BsnI	GGCC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	1 cut(s)	33
Bsp1720I	GCTNAGC	1 cut(s)	81
BspACI	CCGC	5 cut(s)	5, 9, 51, 180, 292
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	207
Bst6I	CTCTTC	1 cut(s)	152
BstAPI	GCANNNNNTGC	1 cut(s)	91
BstDEI	CTNAG	2 cut(s)	81, 176
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	33
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 91
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	2 cut(s)	43, 168
BstSFI	CTRYAG	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	97
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	8
BtsCI	GGATG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	212
CaiI	CAGNNNCTG	1 cut(s)	91
CciI	TCATGA	1 cut(s)	64
CciNI	GCGGCCGC	1 cut(s)	6
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	4 cut(s)	8, 80, 88, 263
CviKI_1	RGCY	4 cut(s)	8, 80, 88, 263
DdeI	CTNAG	2 cut(s)	81, 176
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
EclXI	CGGCCG	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	12
Eco52I	CGGCCG	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	1 cut(s)	68
FaiI	YATR	1 cut(s)	66
FatI	CATG	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	184
Fnu4HI	GCNGC	5 cut(s)	6, 9, 51, 86, 290
FokI	GGATG	1 cut(s)	27
Fsp4HI	GCNGC	5 cut(s)	6, 9, 51, 86, 290
GluI	GCNGC	5 cut(s)	6, 9, 51, 86, 290
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	1 cut(s)	68
HinfI	GANTC	4 cut(s)	68, 123, 129, 144
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	2 cut(s)	128, 236
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	1 cut(s)	185
Hpy99I	CGWCG	2 cut(s)	120, 123
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4V	TGCA	1 cut(s)	289
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 91
HpyF3I	CTNAG	2 cut(s)	81, 176
Hsp92II	CATG	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	33
LpnPI	CCDG	7 cut(s)	57, 155, 182, 206, 249, 265, 282
Lsp1109I	GCAGC	1 cut(s)	97
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	3 cut(s)	34, 139, 262
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	1 cut(s)	195
MlyI	GAGTC	2 cut(s)	123, 138
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	8 cut(s)	99, 105, 108, 143, 146, 176, 217, 277
MslI	CAYNNNNRTG	1 cut(s)	45
MspA1I	CMGCKG	2 cut(s)	53, 292
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	45, 170
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	56, 91
NciI	CCSGG	1 cut(s)	45
NdeII	GATC	1 cut(s)	33
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	1 cut(s)	49
NotI	GCGGCCGC	1 cut(s)	6
PagI	TCATGA	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PfeI	GAWTC	2 cut(s)	68, 123
PkrI	GCNGC	5 cut(s)	7, 10, 52, 87, 291
PleI	GAGTC	2 cut(s)	123, 138
PpsI	GAGTC	2 cut(s)	123, 138
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	45
SatI	GCNGC	5 cut(s)	6, 9, 51, 86, 290
Sau3AI	GATC	1 cut(s)	33
SchI	GAGTC	2 cut(s)	123, 138
ScrFI	CCNGG	2 cut(s)	45, 170
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	6 cut(s)	18, 30, 82, 174, 265, 288
SfcI	CTRYAG	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	45
Sse9I	AATT	1 cut(s)	195
SsiI	CCGC	5 cut(s)	5, 9, 51, 180, 292
StyD4I	CCNGG	2 cut(s)	43, 168
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	207
TaqI	TCGA	2 cut(s)	36, 275
TasI	AATT	1 cut(s)	195
TauI	GCSGC	3 cut(s)	8, 11, 53
TfiI	GAWTC	2 cut(s)	68, 123
TscAI	CASTG	1 cut(s)	212
TseI	GCWGC	2 cut(s)	85, 289
TspDTI	ATGAA	1 cut(s)	35
TspRI	CASTG	1 cut(s)	212
XapI	RAATTY	1 cut(s)	195
XmiI	GTMKAC	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.