Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007228

Physical Location & Seq

Genomic Coordinates Reverse (-)

1534921 .. 1537789

Gene Structure 2869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1021300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCGAGGGGGAAGATCCAGATCAGGAGGATAGAGAACTCGACCAACAGGCAGGTGACCTACTCCAAGCGAAGGAACGGACTCTTCAAGAAGGCCAACGAGCTCACCGTCCTCTGCGACGCCGAGGTCTCTCTCATCATGGTTTCGAGCTCCGGCAAAGTCCACGAGTACATTAGCCCCTCCACCACAACAAAGCAATTGCTGGATCAGTACCAGAAGACTCTTGGAATCGATATTTGGAGCTCGCACTACGAGGCAATGCAACAGCATTTGAAGAAGCTCAAGGAGGTGAACATGAATCTTCGGAGGCAGATCAGGCAGAGAGTTGGGGATTGTCTGAACGATCTGAGTTTCGATGAACTGCGTGGTCTCGAGGAAGAGGTGAAAGCTGCCGTCGACGTCATTCGCCAGCGCAAGGTTCGAATGATCTCTAATAAGATTGATACAACCAAGAAAAAGGTAAAGAGCCAAGCGGATGTGAACATGAGTCTCCACGAACTTTATGCGAGGGAAGGTATACACTATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

177

Amino Acids

20.48

Weight (kDa)

9.67

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.2e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	81 - 166	3.5e-20	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54340
fragaria_vesca	FvH4_2g38970 FvH4_2g38970 FvH4_2g38970
malus_domestica	MD08G1021300.v1.1
prunus_persica	Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1
pyrus_communis	pycom08g01680
rosa_chinensis	RchiOBHm_Chr6g0302061
rosa_laevigata	RLG00000011198
rosa_multiflora	Rmu_ssc0000160.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166120
rosa_rugosa	Rorug06G0311600 Rorug06G0311700 Rorug06G0311800 Rorug06G0311900
rosa_samantha	Rh6AG424400 Rh6BG478100 Rh6CG437300
rosa_wichuraiana	Rw6G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
AasI	GACNNNNNNGTC	1 cut(s)	125
AatII	GACGTC	1 cut(s)	402
Acc36I	ACCTGC	1 cut(s)	43
AccI	GTMKAC	2 cut(s)	396, 517
AciI	CCGC	1 cut(s)	473
AclWI	GGATC	2 cut(s)	10, 213
AcyI	GRCGYC	2 cut(s)	120, 399
AfaI	GTAC	2 cut(s)	170, 212
AfiI	CCNNNNNNNGG	2 cut(s)	72, 415
AgsI	TTSAA	2 cut(s)	88, 274
AjuI	GAANNNNNNNTTGG	2 cut(s)	220, 252
AluBI	AGCT	5 cut(s)	103, 150, 243, 280, 389
AluI	AGCT	5 cut(s)	103, 150, 243, 280, 389
Alw21I	GWGCWC	3 cut(s)	105, 152, 245
Alw26I	GTCTC	3 cut(s)	133, 374, 494
AlwI	GGATC	2 cut(s)	10, 213
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	414
AsuHPI	GGTGA	4 cut(s)	67, 97, 301, 394
AsuII	TTCGAA	1 cut(s)	421
AvaI	CYCGRG	1 cut(s)	371
BanII	GRGCYC	3 cut(s)	105, 152, 245
BauI	CACGAG	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	224
Bbv12I	GWGCWC	3 cut(s)	105, 152, 245
BbvI	GCAGC	1 cut(s)	376
BceAI	ACGGC	1 cut(s)	377
BcgI	CGANNNNNNTGC	2 cut(s)	485, 519
BcoDI	GTCTC	3 cut(s)	133, 374, 494
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	391
BmeT110I	CYCGRG	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	224
Bpu14I	TTCGAA	1 cut(s)	421
BpuEI	CTTGAG	1 cut(s)	266
Bsa29I	ATCGAT	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	20
BsaHI	GRCGYC	2 cut(s)	120, 399
BsaI	GGTCTC	2 cut(s)	133, 374
BsaJI	CCNNGG	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 415
Bse3DI	GCAATG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	20
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	481
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	72, 415
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	376
BshFI	GGCC	1 cut(s)	95
BshVI	ATCGAT	1 cut(s)	231
BsiHKAI	GWGCWC	3 cut(s)	105, 152, 245
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	72, 415
BsmAI	GTCTC	3 cut(s)	133, 374, 494
BsnI	GGCC	1 cut(s)	95
Bso31I	GGTCTC	2 cut(s)	133, 374
BsoBI	CYCGRG	1 cut(s)	371
Bsp119I	TTCGAA	1 cut(s)	421
Bsp1286I	GDGCHC	3 cut(s)	105, 152, 245
Bsp143I	GATC	6 cut(s)	15, 21, 205, 312, 343, 426
BspACI	CCGC	1 cut(s)	473
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	339
BspDI	ATCGAT	1 cut(s)	231
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	2 cut(s)	10, 213
BspT104I	TTCGAA	1 cut(s)	421
BspTNI	GGTCTC	2 cut(s)	133, 374
BsrDI	GCAATG	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	6 cut(s)	15, 21, 205, 312, 343, 426
BssNAI	GTATAC	1 cut(s)	518
BssNI	GRCGYC	2 cut(s)	120, 399
BssSI	CACGAG	1 cut(s)	164
Bst1107I	GTATAC	1 cut(s)	518
Bst2BI	CACGAG	1 cut(s)	164
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	2 cut(s)	89, 372
BstACI	GRCGYC	2 cut(s)	120, 399
BstBI	TTCGAA	1 cut(s)	421
BstC8I	GCNNGC	2 cut(s)	245, 410
BstDEI	CTNAG	1 cut(s)	347
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	481
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	6 cut(s)	18, 24, 208, 315, 346, 429
BstMAI	GTCTC	3 cut(s)	133, 374, 494
BstMBI	GATC	6 cut(s)	15, 21, 205, 312, 343, 426
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstPI	GGTNACC	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	376
BstV2I	GAAGAC	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
BstZ17I	GTATAC	1 cut(s)	518
Bsu15I	ATCGAT	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	95
BsuTUI	ATCGAT	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	481
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	245, 410
CfoI	GCGC	1 cut(s)	414
ClaI	ATCGAT	1 cut(s)	231
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	169, 211
CviAII	CATG	3 cut(s)	139, 295, 484
CviJI	RGCY	8 cut(s)	95, 103, 150, 177, 243, 280, 389, 468
CviKI_1	RGCY	8 cut(s)	95, 103, 150, 177, 243, 280, 389, 468
CviQI	GTAC	2 cut(s)	169, 211
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	6 cut(s)	17, 23, 207, 314, 345, 428
DpnII	GATC	6 cut(s)	15, 21, 205, 312, 343, 426
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
Eam1104I	CTCTTC	2 cut(s)	89, 372
EarI	CTCTTC	2 cut(s)	89, 372
Ecl136II	GAGCTC	3 cut(s)	103, 150, 243
Eco24I	GRGCYC	3 cut(s)	105, 152, 245
Eco31I	GGTCTC	2 cut(s)	133, 374
Eco53kI	GAGCTC	3 cut(s)	103, 150, 243
Eco88I	CYCGRG	1 cut(s)	371
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	3 cut(s)	103, 150, 243
EcoO65I	GGTNACC	1 cut(s)	55
EcoT38I	GRGCYC	3 cut(s)	105, 152, 245
FaeI	CATG	3 cut(s)	142, 298, 487
FaiI	YATR	6 cut(s)	140, 296, 485, 504, 518, 525
FatI	CATG	3 cut(s)	138, 294, 483
FblI	GTMKAC	2 cut(s)	396, 517
Fnu4HI	GCNGC	1 cut(s)	390
FokI	GGATG	1 cut(s)	488
FriOI	GRGCYC	3 cut(s)	105, 152, 245
Fsp4HI	GCNGC	1 cut(s)	390
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	414
Hin1I	GRCGYC	2 cut(s)	120, 399
Hin1II	CATG	3 cut(s)	142, 298, 487
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HinfI	GANTC	5 cut(s)	81, 220, 228, 298, 487
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	4 cut(s)	67, 97, 301, 394
Hpy166II	GTNNAC	5 cut(s)	163, 292, 397, 481, 518
Hpy188I	TCNGA	3 cut(s)	306, 339, 348
Hpy188III	TCNNGA	4 cut(s)	19, 25, 88, 371
Hpy8I	GTNNAC	5 cut(s)	163, 292, 397, 481, 518
Hpy99I	CGWCG	3 cut(s)	122, 398, 401
HpyAV	CCTTC	3 cut(s)	66, 85, 506
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	1 cut(s)	262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	1 cut(s)	347
HpySE526I	ACGT	1 cut(s)	399
Hsp92I	GRCGYC	2 cut(s)	120, 399
Hsp92II	CATG	3 cut(s)	142, 298, 487
HspAI	GCGC	1 cut(s)	412
Kzo9I	GATC	6 cut(s)	15, 21, 205, 312, 343, 426
LmnI	GCTCC	2 cut(s)	155, 240
LpnPI	CCDG	9 cut(s)	10, 32, 34, 38, 166, 188, 227, 301, 422
Lsp1109I	GCAGC	1 cut(s)	376
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	6 cut(s)	17, 23, 207, 314, 345, 428
MboI	GATC	6 cut(s)	15, 21, 205, 312, 343, 426
MboII	GAAGA	6 cut(s)	25, 76, 229, 286, 293, 389
MfeI	CAATTG	1 cut(s)	197
MflI	RGATCY	1 cut(s)	15
MhlI	GDGCHC	3 cut(s)	105, 152, 245
MluCI	AATT	1 cut(s)	197
MlyI	GAGTC	3 cut(s)	75, 214, 496
MspI	CCGG	1 cut(s)	153
MunI	CAATTG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	316
NdeII	GATC	6 cut(s)	15, 21, 205, 312, 343, 426
NlaIII	CATG	3 cut(s)	142, 298, 487
NmeAIII	GCCGAG	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	421
PaeR7I	CTCGAG	1 cut(s)	371
PaqCI	CACCTGC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	228, 298
PkrI	GCNGC	1 cut(s)	391
PleI	GAGTC	3 cut(s)	75, 214, 495
PpsI	GAGTC	3 cut(s)	75, 214, 495
Psp124BI	GAGCTC	3 cut(s)	105, 152, 245
PspEI	GGTNACC	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	15
RsaI	GTAC	2 cut(s)	170, 212
RsaNI	GTAC	2 cut(s)	169, 211
SacI	GAGCTC	3 cut(s)	105, 152, 245
SalI	GTCGAC	1 cut(s)	395
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	6 cut(s)	15, 21, 205, 312, 343, 426
SchI	GAGTC	3 cut(s)	75, 214, 496
SduI	GDGCHC	3 cut(s)	105, 152, 245
Sfr274I	CTCGAG	1 cut(s)	371
SfuI	TTCGAA	1 cut(s)	421
SgrDI	CGTCGACG	1 cut(s)	395
SlaI	CTCGAG	1 cut(s)	371
SmlI	CTYRAG	2 cut(s)	281, 371
SmoI	CTYRAG	2 cut(s)	281, 371
Sse9I	AATT	1 cut(s)	197
SsiI	CCGC	1 cut(s)	473
SstI	GAGCTC	3 cut(s)	105, 152, 245
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	7 cut(s)	41, 146, 231, 354, 372, 396, 421
TasI	AATT	1 cut(s)	197
TatI	WGTACW	1 cut(s)	168
TfiI	GAWTC	2 cut(s)	228, 298
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	311, 372
TspGWI	ACGGA	1 cut(s)	93
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
XhoI	CTCGAG	1 cut(s)	371
XmiI	GTMKAC	2 cut(s)	396, 517
ZraI	GACGTC	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.