Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0007228

Physical Location & Seq

Genomic Coordinates Reverse (-)

1248779 .. 1251054

Gene Structure 2276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g01680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTTACATCAGAACGGAAACCGTGATTTGGTGAAGAACGGAAAGCCTAATCGTTTCGGAGTTTCAGATATTCATATTTTCAGATCGGATTTGAAGAGAGAGAGGGAGGAGGAGAGGAGAGAGAGAGAGATGGCGAGAGGGAAGATCCAGATCAGGAGGATAGAGAACTCGACCAACAGGCAGGTGACCTACTCCAAGCGAAGGAACGGACTCTTCAAGAAGGCCAACGAGCTCACCGTCCTCTGCGACGCCGAGGTCTCTCTCATCATGGTTTCGAGCTCCGGCAAAGTCCACGAGTACATTAGCCCCTCCACCACAACAAAGCAATTGCTGGATCAGTACCGGAAGACTCTTGGAATCGATATTTGGAGCTCGCACTACGAGGCAATGCAAGAGCATTTGAAGAAGCTGAAGGAGGTCAACATGAATCTTCTGAGGCAGATCAGGCAGAGAGTTGGGGATTGTCTGAACGATCTGAGTTTCGATGAACTGCGTGGTCTCCAGGAAGAGGTGGAAGCTGCCGTCGCCGTCATTCGGCAGCGCAAGGTTCGGATGATCTCTAATAAGATTGATACAACCAAGAAAAAGGTAAAGAGCCAAGCAGATATAAACATGAGTCTCCACGAACTCTATGCGAGGGACGGTATACACTATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

220

Amino Acids

25.67

Weight (kDa)

9.69

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	53 - 100	1.7e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	124 - 209	6.9e-19	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54340
fragaria_vesca	FvH4_2g38970 FvH4_2g38970 FvH4_2g38970
malus_domestica	MD08G1021300.v1.1
prunus_persica	Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1
pyrus_communis	pycom08g01680
rosa_chinensis	RchiOBHm_Chr6g0302061
rosa_laevigata	RLG00000011198
rosa_multiflora	Rmu_ssc0000160.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166120
rosa_rugosa	Rorug06G0311600 Rorug06G0311700 Rorug06G0311800 Rorug06G0311900
rosa_samantha	Rh6AG424400 Rh6BG478100 Rh6CG437300
rosa_wichuraiana	Rw6G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	172
AasI	GACNNNNNNGTC	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	172
AccI	GTMKAC	1 cut(s)	646
AclWI	GGATC	2 cut(s)	139, 342
AcuI	CTGAAG	1 cut(s)	431
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	2 cut(s)	299, 341
AfiI	CCNNNNNNNGG	4 cut(s)	28, 201, 508, 534
AgsI	TTSAA	3 cut(s)	94, 217, 403
AjnI	CCWGG	1 cut(s)	501
AjuI	GAANNNNNNNTTGG	2 cut(s)	349, 381
AluBI	AGCT	5 cut(s)	232, 279, 372, 409, 518
AluI	AGCT	5 cut(s)	232, 279, 372, 409, 518
Alw21I	GWGCWC	3 cut(s)	234, 281, 374
Alw26I	GTCTC	3 cut(s)	262, 503, 623
AlwI	GGATC	2 cut(s)	139, 342
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	2 cut(s)	518, 538
AspLEI	GCGC	1 cut(s)	543
AsuHPI	GGTGA	3 cut(s)	43, 196, 226
BanII	GRGCYC	3 cut(s)	234, 281, 374
BauI	CACGAG	1 cut(s)	293
BbsI	GAAGAC	1 cut(s)	353
Bbv12I	GWGCWC	3 cut(s)	234, 281, 374
BbvI	GCAGC	2 cut(s)	505, 550
BccI	CCATC	1 cut(s)	124
BceAI	ACGGC	2 cut(s)	506, 512
BcgI	CGANNNNNNTGC	2 cut(s)	614, 648
BciT130I	CCWGG	1 cut(s)	503
BcoDI	GTCTC	3 cut(s)	262, 503, 623
BfuAI	ACCTGC	1 cut(s)	172
BisI	GCNGC	2 cut(s)	519, 539
BlsI	GCNGC	2 cut(s)	520, 540
Bme1390I	CCNGG	1 cut(s)	503
BmrFI	CCNGG	1 cut(s)	503
BpiI	GAAGAC	1 cut(s)	353
BpmI	CTGGAG	1 cut(s)	485
Bsa29I	ATCGAT	1 cut(s)	360
BsaBI	GATNNNNATC	1 cut(s)	149
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	2 cut(s)	262, 503
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 201, 508, 534
Bse3DI	GCAATG	1 cut(s)	393
Bse8I	GATNNNNATC	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	503
BseCI	ATCGAT	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	558
BseJI	GATNNNNATC	1 cut(s)	149
BseLI	CCNNNNNNNGG	4 cut(s)	28, 201, 508, 534
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	2 cut(s)	425, 467
BseRI	GAGGAG	3 cut(s)	122, 125, 130
BseXI	GCAGC	2 cut(s)	505, 550
BshFI	GGCC	1 cut(s)	224
BshVI	ATCGAT	1 cut(s)	360
BsiHKAI	GWGCWC	3 cut(s)	234, 281, 374
BsiSI	CCGG	2 cut(s)	282, 343
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	4 cut(s)	28, 201, 508, 534
BsmAI	GTCTC	3 cut(s)	262, 503, 623
BsmFI	GGGAC	1 cut(s)	653
BsnI	GGCC	1 cut(s)	224
Bso31I	GGTCTC	2 cut(s)	262, 503
Bsp1286I	GDGCHC	3 cut(s)	234, 281, 374
Bsp143I	GATC	7 cut(s)	83, 144, 150, 334, 441, 472, 555
BspANI	GGCC	1 cut(s)	224
BspCNI	CTCAG	2 cut(s)	426, 468
BspDI	ATCGAT	1 cut(s)	360
BspMI	ACCTGC	1 cut(s)	172
BspPI	GGATC	2 cut(s)	139, 342
BspTNI	GGTCTC	2 cut(s)	262, 503
BsrDI	GCAATG	1 cut(s)	393
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	7 cut(s)	83, 144, 150, 334, 441, 472, 555
BssNAI	GTATAC	1 cut(s)	647
BssNI	GRCGYC	1 cut(s)	249
BssSI	CACGAG	1 cut(s)	293
Bst1107I	GTATAC	1 cut(s)	647
Bst2BI	CACGAG	1 cut(s)	293
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	3 cut(s)	23, 238, 644
Bst6I	CTCTTC	3 cut(s)	89, 218, 501
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	374
BstDEI	CTNAG	2 cut(s)	434, 476
BstEII	GGTNACC	1 cut(s)	184
BstF5I	GGATG	1 cut(s)	558
BstHHI	GCGC	1 cut(s)	543
BstKTI	GATC	7 cut(s)	86, 147, 153, 337, 444, 475, 558
BstMAI	GTCTC	3 cut(s)	262, 503, 623
BstMBI	GATC	7 cut(s)	83, 144, 150, 334, 441, 472, 555
BstMWI	GCNNNNNNNGC	2 cut(s)	445, 524
BstNI	CCWGG	1 cut(s)	503
BstPI	GGTNACC	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	501
BstV1I	GCAGC	2 cut(s)	505, 550
BstV2I	GAAGAC	1 cut(s)	353
BstX2I	RGATCY	1 cut(s)	144
BstYI	RGATCY	1 cut(s)	144
BstZ17I	GTATAC	1 cut(s)	647
Bsu15I	ATCGAT	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	224
BsuTUI	ATCGAT	1 cut(s)	360
BtsCI	GGATG	1 cut(s)	558
BveI	ACCTGC	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	374
CfoI	GCGC	1 cut(s)	543
ClaI	ATCGAT	1 cut(s)	360
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	2 cut(s)	298, 340
CviAII	CATG	3 cut(s)	268, 424, 613
CviJI	RGCY	9 cut(s)	46, 224, 232, 279, 306, 372, 409, 518, 597
CviKI_1	RGCY	9 cut(s)	46, 224, 232, 279, 306, 372, 409, 518, 597
CviQI	GTAC	2 cut(s)	298, 340
DdeI	CTNAG	2 cut(s)	434, 476
DpnI	GATC	7 cut(s)	85, 146, 152, 336, 443, 474, 557
DpnII	GATC	7 cut(s)	83, 144, 150, 334, 441, 472, 555
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
Eam1104I	CTCTTC	3 cut(s)	89, 218, 501
EarI	CTCTTC	3 cut(s)	89, 218, 501
Ecl136II	GAGCTC	3 cut(s)	232, 279, 372
Eco24I	GRGCYC	3 cut(s)	234, 281, 374
Eco31I	GGTCTC	2 cut(s)	262, 503
Eco53kI	GAGCTC	3 cut(s)	232, 279, 372
Eco57I	CTGAAG	1 cut(s)	431
Eco91I	GGTNACC	1 cut(s)	184
EcoICRI	GAGCTC	3 cut(s)	232, 279, 372
EcoO65I	GGTNACC	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	501
EcoT38I	GRGCYC	3 cut(s)	234, 281, 374
FaeI	CATG	3 cut(s)	271, 427, 616
FaiI	YATR	8 cut(s)	75, 269, 425, 608, 614, 633, 647, 654
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	3 cut(s)	267, 423, 612
FblI	GTMKAC	1 cut(s)	646
Fnu4HI	GCNGC	2 cut(s)	519, 539
FokI	GGATG	1 cut(s)	565
FriOI	GRGCYC	3 cut(s)	234, 281, 374
Fsp4HI	GCNGC	2 cut(s)	519, 539
GlaI	GCGC	1 cut(s)	542
GluI	GCNGC	2 cut(s)	519, 539
GsuI	CTGGAG	1 cut(s)	485
HaeIII	GGCC	1 cut(s)	224
HapII	CCGG	2 cut(s)	282, 343
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	1 cut(s)	543
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	3 cut(s)	271, 427, 616
Hin6I	GCGC	1 cut(s)	541
HinP1I	GCGC	1 cut(s)	541
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	5 cut(s)	210, 349, 357, 427, 616
HpaII	CCGG	2 cut(s)	282, 343
HphI	GGTGA	3 cut(s)	43, 196, 226
Hpy166II	GTNNAC	3 cut(s)	292, 421, 647
Hpy188I	TCNGA	9 cut(s)	12, 59, 67, 83, 88, 435, 468, 477, 552
Hpy188III	TCNNGA	3 cut(s)	148, 154, 217
Hpy8I	GTNNAC	3 cut(s)	292, 421, 647
Hpy99I	CGWCG	2 cut(s)	251, 527
HpyAV	CCTTC	3 cut(s)	195, 214, 406
HpyCH4III	ACNGT	3 cut(s)	23, 238, 644
HpyCH4V	TGCA	1 cut(s)	391
HpyF10VI	GCNNNNNNNGC	2 cut(s)	445, 524
HpyF3I	CTNAG	2 cut(s)	434, 476
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	3 cut(s)	271, 427, 616
HspAI	GCGC	1 cut(s)	541
Kzo9I	GATC	7 cut(s)	83, 144, 150, 334, 441, 472, 555
LmnI	GCTCC	2 cut(s)	284, 369
Lsp1109I	GCAGC	2 cut(s)	505, 550
MaeIII	GTNAC	2 cut(s)	3, 184
MalI	GATC	7 cut(s)	85, 146, 152, 336, 443, 474, 557
MboI	GATC	7 cut(s)	83, 144, 150, 334, 441, 472, 555
MboII	GAAGA	8 cut(s)	46, 106, 154, 205, 358, 415, 422, 518
MfeI	CAATTG	1 cut(s)	326
MflI	RGATCY	1 cut(s)	144
MhlI	GDGCHC	3 cut(s)	234, 281, 374
MluCI	AATT	1 cut(s)	326
MlyI	GAGTC	3 cut(s)	204, 343, 625
MspI	CCGG	2 cut(s)	282, 343
MspR9I	CCNGG	1 cut(s)	503
MunI	CAATTG	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	503
MwoI	GCNNNNNNNGC	2 cut(s)	445, 524
NdeII	GATC	7 cut(s)	83, 144, 150, 334, 441, 472, 555
NlaIII	CATG	3 cut(s)	271, 427, 616
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	184
PaqCI	CACCTGC	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	357, 427
PfoI	TCCNGGA	1 cut(s)	501
PkrI	GCNGC	2 cut(s)	520, 540
PleI	GAGTC	3 cut(s)	204, 343, 624
PpsI	GAGTC	3 cut(s)	204, 343, 624
Psp124BI	GAGCTC	3 cut(s)	234, 281, 374
Psp6I	CCWGG	1 cut(s)	501
PspEI	GGTNACC	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	501
PsuI	RGATCY	1 cut(s)	144
RsaI	GTAC	2 cut(s)	299, 341
RsaNI	GTAC	2 cut(s)	298, 340
SacI	GAGCTC	3 cut(s)	234, 281, 374
SatI	GCNGC	2 cut(s)	519, 539
Sau3AI	GATC	7 cut(s)	83, 144, 150, 334, 441, 472, 555
SchI	GAGTC	3 cut(s)	204, 343, 625
ScrFI	CCNGG	1 cut(s)	503
SduI	GDGCHC	3 cut(s)	234, 281, 374
Sse9I	AATT	1 cut(s)	326
SstI	GAGCTC	3 cut(s)	234, 281, 374
StyD4I	CCNGG	1 cut(s)	501
TaaI	ACNGT	3 cut(s)	23, 238, 644
TaqI	TCGA	4 cut(s)	170, 275, 360, 483
TasI	AATT	1 cut(s)	326
TatI	WGTACW	1 cut(s)	297
TfiI	GAWTC	2 cut(s)	357, 427
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	2 cut(s)	518, 538
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	3 cut(s)	62, 440, 501
TspGWI	ACGGA	3 cut(s)	30, 54, 222
XmiI	GTMKAC	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.