Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007228

Physical Location & Seq

Genomic Coordinates Reverse (-)

7569016 .. 7571414

Gene Structure 2399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011198

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCCAATCCACAAACCCCTTCCATTCTTGATCGGATTGGAATCGAAGCTAGCTGCTCCAGATCGGCGAAGAAAATGGCGAGAGGTAAGATCCAGATCAAGAGGATAGAGAACGTGACGAATAGGCAGGTCACCTACTCCAAGAGAAGGAACGGCCTCTTCAAGAAGGCCAATGAGCTCACTGTTCTCTGTGATGCTAAGGTTTCTCTCCTCATGGTTTCCTCTTCCGGAAAGCTTCATGAATTCATCAGCCCCTCCACCACGACAAAGCAAGTGTACGATGAGTACCAGAAGCTCCTCGGAATTGACCTTTGGAAATCGCACTATGAGACAATGCAAGAAAATTTGAAGAAGCTGAAAGAGATAAATAAGAGTCTTAGGAGGCAGATCAGCCACAGGGTGGGCGAGTGTTTGAACGATCTGAGATTCGCTGAACTGCACAGTCTTGAGAAAGAAATGGAAAGCGCTGTAGAAGTTGTTCGTAATCGCAAGCTGAAGCTGATCTCCAATCAGATTGATACCAAGAGGAAAAAGATTCGGAATGCAACAGAGTGCAACAGGAGACTCTATGAATATGATGCAATGGAGGAACCGCACTACGGATTGGTTGACGATGGAGGAGATTATTATGATTCTGCAGTCATTGGCTACTCAGCAAATGAAGACCCTCACAATGTATTTCCTTTAAGGCTGCAACCTTCTCATCATCCTAATCTTCACCACGGAGGAGGAAGTTCAGATCTTACGACCTACTCTTTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

255

Amino Acids

29.12

Weight (kDa)

9.2

Isoelectric Point (pI)

55.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	35 - 82	5e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	106 - 190	3.8e-19	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54340
fragaria_vesca	FvH4_2g38970 FvH4_2g38970 FvH4_2g38970
malus_domestica	MD08G1021300.v1.1
prunus_persica	Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1
pyrus_communis	pycom08g01680
rosa_chinensis	RchiOBHm_Chr6g0302061
rosa_laevigata	RLG00000011198
rosa_multiflora	Rmu_ssc0000160.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166120
rosa_rugosa	Rorug06G0311600 Rorug06G0311700 Rorug06G0311800 Rorug06G0311900
rosa_samantha	Rh6AG424400 Rh6BG478100 Rh6CG437300
rosa_wichuraiana	Rw6G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	118
AccB7I	CCANNNNNTGG	1 cut(s)	400
AccIII	TCCGGA	1 cut(s)	227
AciI	CCGC	1 cut(s)	593
AclWI	GGATC	1 cut(s)	85
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	242, 343
AcuI	CTGAAG	1 cut(s)	515
AdeI	CACNNNGTG	1 cut(s)	400
AfaI	GTAC	2 cut(s)	278, 287
AfeI	AGCGCT	1 cut(s)	466
AfiI	CCNNNNNNNGG	3 cut(s)	147, 400, 599
AgsI	TTSAA	3 cut(s)	163, 349, 415
AjuI	GAANNNNNNNTTGG	2 cut(s)	295, 327
AluBI	AGCT	8 cut(s)	50, 54, 178, 235, 295, 355, 493, 499
AluI	AGCT	8 cut(s)	50, 54, 178, 235, 295, 355, 493, 499
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	2 cut(s)	323, 556
AlwI	GGATC	1 cut(s)	85
Aor13HI	TCCGGA	1 cut(s)	227
Aor51HI	AGCGCT	1 cut(s)	466
AoxI	GGCC	3 cut(s)	3, 154, 168
ApeKI	GCWGC	2 cut(s)	54, 691
ApoI	RAATTY	2 cut(s)	242, 343
ArsI	GACNNNNNNTTYG	1 cut(s)	739
Asp700I	GAANNNNTTC	1 cut(s)	477
AspLEI	GCGC	1 cut(s)	467
AsuHPI	GGTGA	2 cut(s)	124, 710
AsuNHI	GCTAGC	1 cut(s)	50
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	669
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	41, 678
BccI	CCATC	1 cut(s)	608
BceAI	ACGGC	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	323, 556
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	2 cut(s)	468, 636
BfoI	RGCGCY	1 cut(s)	468
BfuAI	ACCTGC	1 cut(s)	118
BglII	AGATCT	1 cut(s)	739
BisI	GCNGC	2 cut(s)	55, 692
BlsI	GCNGC	2 cut(s)	56, 693
BmiI	GGNNCC	1 cut(s)	591
BmsI	GCATC	2 cut(s)	184, 568
BmtI	GCTAGC	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	669
BpmI	CTGGAG	1 cut(s)	43
Bpu10I	CCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	467
BsaBI	GATNNNNATC	2 cut(s)	41, 95
BsaJI	CCNNGG	2 cut(s)	298, 721
BsaWI	WCCGGW	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 400, 599
Bse3DI	GCAATG	1 cut(s)	588
Bse8I	GATNNNNATC	2 cut(s)	41, 95
BseAI	TCCGGA	1 cut(s)	227
BseDI	CCNNGG	2 cut(s)	298, 721
BseGI	GGATG	1 cut(s)	706
BseJI	GATNNNNATC	2 cut(s)	41, 95
BseLI	CCNNNNNNNGG	3 cut(s)	147, 400, 599
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	2 cut(s)	413, 666
BseRI	GAGGAG	4 cut(s)	200, 287, 633, 741
BseXI	GCAGC	2 cut(s)	41, 678
BsgI	GTGCAG	1 cut(s)	422
BshFI	GGCC	3 cut(s)	5, 156, 170
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	228
BslI	CCNNNNNNNGG	3 cut(s)	147, 400, 599
BsmAI	GTCTC	2 cut(s)	323, 556
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	3 cut(s)	5, 156, 170
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp13I	TCCGGA	1 cut(s)	227
Bsp143I	GATC	8 cut(s)	31, 62, 90, 96, 387, 418, 501, 739
BspACI	CCGC	1 cut(s)	593
BspANI	GGCC	3 cut(s)	5, 156, 170
BspCNI	CTCAG	2 cut(s)	414, 665
BspEI	TCCGGA	1 cut(s)	227
BspHI	TCATGA	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	591
BspMAI	CTGCAG	1 cut(s)	640
BspMI	ACCTGC	1 cut(s)	118
BspOI	GCTAGC	1 cut(s)	54
BspPI	GGATC	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	588
BssECI	CCNNGG	2 cut(s)	298, 721
BssMI	GATC	8 cut(s)	31, 62, 90, 96, 387, 418, 501, 739
Bst4CI	ACNGT	2 cut(s)	184, 443
Bst6I	CTCTTC	2 cut(s)	164, 229
BstC8I	GCNNGC	2 cut(s)	52, 491
BstDEI	CTNAG	4 cut(s)	198, 377, 422, 652
BstDSI	CCRYGG	1 cut(s)	721
BstEII	GGTNACC	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	706
BstH2I	RGCGCY	1 cut(s)	468
BstHHI	GCGC	1 cut(s)	467
BstKTI	GATC	8 cut(s)	34, 65, 93, 99, 390, 421, 504, 742
BstMAI	GTCTC	2 cut(s)	323, 556
BstMBI	GATC	8 cut(s)	31, 62, 90, 96, 387, 418, 501, 739
BstPI	GGTNACC	1 cut(s)	130
BstSFI	CTRYAG	2 cut(s)	468, 636
BstV1I	GCAGC	2 cut(s)	41, 678
BstV2I	GAAGAC	1 cut(s)	669
BstX2I	RGATCY	2 cut(s)	90, 739
BstYI	RGATCY	2 cut(s)	90, 739
BsuRI	GGCC	3 cut(s)	5, 156, 170
BtgI	CCRYGG	1 cut(s)	721
BtsCI	GGATG	1 cut(s)	706
BtsIMutI	CAGTG	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	118
Cac8I	GCNNGC	2 cut(s)	52, 491
CciI	TCATGA	1 cut(s)	238
CfoI	GCGC	1 cut(s)	467
Csp6I	GTAC	2 cut(s)	277, 286
CviAII	CATG	2 cut(s)	214, 239
CviQI	GTAC	2 cut(s)	277, 286
DdeI	CTNAG	4 cut(s)	198, 377, 422, 652
DpnI	GATC	8 cut(s)	33, 64, 92, 98, 389, 420, 503, 741
DpnII	GATC	8 cut(s)	31, 62, 90, 96, 387, 418, 501, 739
DraIII	CACNNNGTG	1 cut(s)	400
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	164, 229
EarI	CTCTTC	2 cut(s)	164, 229
Ecl136II	GAGCTC	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	180
Eco47III	AGCGCT	1 cut(s)	466
Eco53kI	GAGCTC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	515
Eco91I	GGTNACC	1 cut(s)	130
EcoICRI	GAGCTC	1 cut(s)	178
EcoO65I	GGTNACC	1 cut(s)	130
EcoRI	GAATTC	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	180
FaeI	CATG	2 cut(s)	217, 242
FaiI	YATR	6 cut(s)	215, 240, 327, 570, 576, 630
FatI	CATG	2 cut(s)	213, 238
Fnu4HI	GCNGC	2 cut(s)	55, 692
FokI	GGATG	1 cut(s)	693
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	2 cut(s)	55, 692
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	1 cut(s)	466
GluI	GCNGC	2 cut(s)	55, 692
GsuI	CTGGAG	1 cut(s)	43
HaeII	RGCGCY	1 cut(s)	468
HaeIII	GGCC	3 cut(s)	5, 156, 170
HapII	CCGG	1 cut(s)	228
HhaI	GCGC	1 cut(s)	467
Hin1II	CATG	2 cut(s)	217, 242
Hin6I	GCGC	1 cut(s)	465
HinP1I	GCGC	1 cut(s)	465
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	6 cut(s)	42, 373, 426, 535, 564, 632
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	2 cut(s)	124, 710
Hpy166II	GTNNAC	2 cut(s)	277, 610
Hpy188I	TCNGA	6 cut(s)	36, 302, 423, 513, 540, 739
Hpy188III	TCNNGA	8 cut(s)	29, 60, 94, 100, 163, 228, 239, 446
Hpy8I	GTNNAC	2 cut(s)	277, 610
HpyAV	CCTTC	4 cut(s)	30, 141, 160, 708
HpyCH4III	ACNGT	2 cut(s)	184, 443
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	7 cut(s)	337, 439, 545, 555, 581, 638, 694
HpyF3I	CTNAG	4 cut(s)	198, 377, 422, 652
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	217, 242
HspAI	GCGC	1 cut(s)	465
Kpn2I	TCCGGA	1 cut(s)	227
Kzo9I	GATC	8 cut(s)	31, 62, 90, 96, 387, 418, 501, 739
LmnI	GCTCC	2 cut(s)	62, 300
LpnPI	CCDG	7 cut(s)	73, 107, 113, 241, 302, 382, 544
Lsp1109I	GCAGC	2 cut(s)	41, 678
LweI	GCATC	2 cut(s)	184, 568
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	115, 130
MalI	GATC	8 cut(s)	33, 64, 92, 98, 389, 420, 503, 741
MboI	GATC	8 cut(s)	31, 62, 90, 96, 387, 418, 501, 739
MboII	GAAGA	6 cut(s)	82, 151, 216, 361, 674, 707
MflI	RGATCY	2 cut(s)	90, 739
MhlI	GDGCHC	1 cut(s)	180
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	242, 303, 343
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	382, 558
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	227
MroXI	GAANNNNTTC	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	686
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	547
NdeII	GATC	8 cut(s)	31, 62, 90, 96, 387, 418, 501, 739
NheI	GCTAGC	1 cut(s)	50
NlaIII	CATG	2 cut(s)	217, 242
NlaIV	GGNNCC	1 cut(s)	591
NmuCI	GTSAC	2 cut(s)	115, 130
PagI	TCATGA	1 cut(s)	238
PctI	GAATGC	1 cut(s)	547
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	4 cut(s)	42, 426, 535, 632
PflMI	CCANNNNNTGG	1 cut(s)	400
PkrI	GCNGC	2 cut(s)	56, 693
PleI	GAGTC	2 cut(s)	381, 558
PpsI	GAGTC	2 cut(s)	381, 558
Psp124BI	GAGCTC	1 cut(s)	180
PspEI	GGTNACC	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	591
PsrI	GAACNNNNNNTAC	2 cut(s)	462, 494
PstI	CTGCAG	1 cut(s)	640
PsuI	RGATCY	2 cut(s)	90, 739
RsaI	GTAC	2 cut(s)	278, 287
RsaNI	GTAC	2 cut(s)	277, 286
SacI	GAGCTC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	686
SatI	GCNGC	2 cut(s)	55, 692
Sau3AI	GATC	8 cut(s)	31, 62, 90, 96, 387, 418, 501, 739
SchI	GAGTC	2 cut(s)	382, 558
SduI	GDGCHC	1 cut(s)	180
SfaNI	GCATC	2 cut(s)	184, 568
SfcI	CTRYAG	2 cut(s)	468, 636
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	3 cut(s)	242, 303, 343
SsiI	CCGC	1 cut(s)	593
SspMI	CTAG	1 cut(s)	51
SstI	GAGCTC	1 cut(s)	180
TaaI	ACNGT	2 cut(s)	184, 443
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	1 cut(s)	45
TasI	AATT	3 cut(s)	242, 303, 343
TfiI	GAWTC	4 cut(s)	42, 426, 535, 632
Tru1I	TTAA	1 cut(s)	686
Tru9I	TTAA	1 cut(s)	686
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	2 cut(s)	115, 130
TseI	GCWGC	2 cut(s)	54, 691
Tsp45I	GTSAC	2 cut(s)	115, 130
TspDTI	ATGAA	5 cut(s)	227, 235, 255, 585, 675
TspGWI	ACGGA	2 cut(s)	615, 738
TspRI	CASTG	1 cut(s)	187
Van91I	CCANNNNNTGG	1 cut(s)	400
XapI	RAATTY	2 cut(s)	242, 343
XmnI	GAANNNNTTC	1 cut(s)	477
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.