Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007228

Physical Location & Seq

Genomic Coordinates Reverse (-)

46301139 .. 46301595

Gene Structure 457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0311600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAAGTTGTTCATGAAATTGGTGCTGGTGGCTGCAGTGGTGGTTGTCCTTTTGAACATGGGTTCAAATGAGGCGTGCAGAGTCTTAAACAAAGATGTCCTACAAAAGGGTACTGTTATTAATCCTCCCCATTTCGCTGTGGTTATCAAGCAAATTGTGCAGAGGACTATAATCCGGCCACCCAGTACCGGAGGTCCTTTTGAGGGGACGAAATTAATCTCTTCAACTAGCAATCAAAGAGTGCACTATGTTTCTAACCAGGGCATCTACATTCCTTCAATTATCCGCCAAAGATTGCAGAAAGCTCCTCTGCCGCCCTCTGGCGGAAATCCAATCACTAATCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

115

Amino Acids

12.52

Weight (kDa)

10.77

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54340
fragaria_vesca	FvH4_2g38970 FvH4_2g38970 FvH4_2g38970
malus_domestica	MD08G1021300.v1.1
prunus_persica	Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1
pyrus_communis	pycom08g01680
rosa_chinensis	RchiOBHm_Chr6g0302061
rosa_laevigata	RLG00000011198
rosa_multiflora	Rmu_ssc0000160.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166120
rosa_rugosa	Rorug06G0311600 Rorug06G0311700 Rorug06G0311800 Rorug06G0311900
rosa_samantha	Rh6AG424400 Rh6BG478100 Rh6CG437300
rosa_wichuraiana	Rw6G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	286, 314, 324
AcoI	YGGCCR	1 cut(s)	176
AfaI	GTAC	2 cut(s)	112, 187
AfiI	CCNNNNNNNGG	5 cut(s)	106, 188, 203, 320, 323
AgsI	TTSAA	4 cut(s)	55, 66, 225, 279
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
Alw21I	GWGCWC	1 cut(s)	246
Alw44I	GTGCAC	1 cut(s)	242
AoxI	GGCC	1 cut(s)	176
ApaLI	GTGCAC	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	32
AseI	ATTAAT	2 cut(s)	120, 215
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	260
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	1 cut(s)	33
BisI	GCNGC	2 cut(s)	33, 314
BlsI	GCNGC	2 cut(s)	34, 315
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	194
BmrFI	CCNGG	1 cut(s)	260
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	1 cut(s)	273
BmuI	ACTGGG	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	259
BsaWI	WCCGGW	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	5 cut(s)	106, 188, 203, 320, 323
Bse1I	ACTGG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	259
BseLI	CCNNNNNNNGG	5 cut(s)	106, 188, 203, 320, 323
BseNI	ACTGG	1 cut(s)	183
BseRI	GAGGAG	1 cut(s)	297
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	19
BsgI	GTGCAG	2 cut(s)	97, 179
BshFI	GGCC	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	2 cut(s)	175, 189
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	5 cut(s)	106, 188, 203, 320, 323
BsmFI	GGGAC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	246
BspACI	CCGC	3 cut(s)	286, 314, 324
BspANI	GGCC	1 cut(s)	178
BspHI	TCATGA	1 cut(s)	12
BspMAI	CTGCAG	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	226
BstAPI	GCANNNNNTGC	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	76
BstENI	CCTNNNNNAGG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	1 cut(s)	33
BstSLI	GKGCMC	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	76
CciI	TCATGA	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	111, 186
CviAII	CATG	2 cut(s)	13, 58
CviJI	RGCY	3 cut(s)	32, 178, 305
CviKI_1	RGCY	3 cut(s)	32, 178, 305
CviQI	GTAC	2 cut(s)	111, 186
EaeI	YGGCCR	1 cut(s)	176
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
EciI	GGCGGA	2 cut(s)	275, 339
Eco47I	GGWCC	1 cut(s)	194
EcoNI	CCTNNNNNAGG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	258
FaeI	CATG	2 cut(s)	16, 61
FaiI	YATR	4 cut(s)	14, 59, 170, 249
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	2 cut(s)	12, 57
Fnu4HI	GCNGC	2 cut(s)	33, 314
Fsp4HI	GCNGC	2 cut(s)	33, 314
FspBI	CTAG	1 cut(s)	228
GluI	GCNGC	2 cut(s)	33, 314
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	2 cut(s)	175, 189
Hin1II	CATG	2 cut(s)	16, 61
HinfI	GANTC	1 cut(s)	81
HpaII	CCGG	2 cut(s)	175, 189
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188III	TCNNGA	1 cut(s)	13
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	1 cut(s)	285
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	5 cut(s)	35, 78, 160, 244, 298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
Hsp92II	CATG	2 cut(s)	16, 61
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	7 cut(s)	11, 188, 196, 202, 245, 272, 306
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	273
MaeI	CTAG	1 cut(s)	228
MboII	GAAGA	1 cut(s)	213
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	4 cut(s)	17, 153, 212, 279
MlyI	GAGTC	1 cut(s)	90
MnlI	CCTC	7 cut(s)	64, 135, 156, 185, 196, 318, 328
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	3 cut(s)	86, 120, 215
MspI	CCGG	2 cut(s)	175, 189
MspR9I	CCNGG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	157
NlaIII	CATG	2 cut(s)	16, 61
PagI	TCATGA	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	34, 315
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PpuMI	RGGWCCY	1 cut(s)	194
PshBI	ATTAAT	2 cut(s)	120, 215
Psp5II	RGGWCCY	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspPI	GGNCC	1 cut(s)	194
PspPPI	RGGWCCY	1 cut(s)	194
PstI	CTGCAG	1 cut(s)	37
RsaI	GTAC	2 cut(s)	112, 187
RsaNI	GTAC	2 cut(s)	111, 186
SaqAI	TTAA	3 cut(s)	86, 120, 215
SatI	GCNGC	2 cut(s)	33, 314
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	1 cut(s)	90
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	2 cut(s)	196, 307
SfaNI	GCATC	1 cut(s)	273
SfcI	CTRYAG	1 cut(s)	33
SinI	GGWCC	1 cut(s)	194
Sse9I	AATT	4 cut(s)	17, 153, 212, 279
SsiI	CCGC	3 cut(s)	286, 314, 324
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	115
TasI	AATT	4 cut(s)	17, 153, 212, 279
TauI	GCSGC	1 cut(s)	316
Tru1I	TTAA	3 cut(s)	86, 120, 215
Tru9I	TTAA	3 cut(s)	86, 120, 215
TscAI	CASTG	1 cut(s)	42
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	2 cut(s)	17, 29
TspRI	CASTG	1 cut(s)	42
VneI	GTGCAC	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	194
VspI	ATTAAT	2 cut(s)	120, 215
XagI	CCTNNNNNAGG	1 cut(s)	104
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.