Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007228

Physical Location & Seq

Genomic Coordinates Forward (+)

28095003 .. 28098118

Gene Structure 3116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g38970.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCGAGAGGTAAGATCCAGATCAAGAGGATAGAGAACGTGACGAACAGGCAGGTCACCTACTCCAAGAGAAGGAACGGTCTCTTCAAGAAGGCCAATGAGCTCACTGTTCTCTGTGATGCCAAGGTTTCTCTCCTCATGGTTTCCTCCTCCGGAAAGCTTCATGAGTTCATTAGCCCCTCCACCACGACAAAGCAAGTGTACGATGAGTACCAGAAGCTTCTTGGAATCGACCTTTGGAAATCGCACTATGAGACGATGCAAGAAAATTTGAAGAAGCTGAAAGAGACTAATAAGAGTCTGAAGAGGCAGATCAGGCAAAGGCTGGGCGAGTGTTTGAACGATCTGAGATTTGCTGATCTGCTCAGTCTTGAGAAAGAAATGGAAACCGCTGTAGAAGTTGTTCGTCTTCGCAAGGAGAAGCTGATCATGAATCAGATTCAAACCAAGACGAAAAAGATTCGGAATGCAACAGCGTGTAACAACAGACTCTATGAATTTGATATGGATGATCCGCACTATGGACTGGTTGAAGATGGAGTGGAATATTATGATTCTGCAGTCATTGGCTATTCAGCAAATGAACACCCTCACAATGTATTTCCTTTAAGGCTGCAACCTTCTCATCATCATCATCCTAATCTTCACCATGGAGGAGGAGGAGGTTCAGATCGTACGACCTACACCCCCTTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

233

Amino Acids

26.82

Weight (kDa)

9.28

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	2.5e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	81 - 166	1.6e-19	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54340
fragaria_vesca	FvH4_2g38970 FvH4_2g38970 FvH4_2g38970
malus_domestica	MD08G1021300.v1.1
prunus_persica	Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1
pyrus_communis	pycom08g01680
rosa_chinensis	RchiOBHm_Chr6g0302061
rosa_laevigata	RLG00000011198
rosa_multiflora	Rmu_ssc0000160.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166120
rosa_rugosa	Rorug06G0311600 Rorug06G0311700 Rorug06G0311800 Rorug06G0311900
rosa_samantha	Rh6AG424400 Rh6BG478100 Rh6CG437300
rosa_wichuraiana	Rw6G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AccIII	TCCGGA	1 cut(s)	152
AciI	CCGC	2 cut(s)	390, 515
AclWI	GGATC	2 cut(s)	10, 506
AcsI	RAATTY	2 cut(s)	268, 497
AcuI	CTGAAG	1 cut(s)	323
AfaI	GTAC	3 cut(s)	203, 212, 676
AfiI	CCNNNNNNNGG	2 cut(s)	72, 521
AgsI	TTSAA	5 cut(s)	88, 274, 340, 443, 533
AjuI	GAANNNNNNNTTGG	2 cut(s)	220, 252
AluBI	AGCT	5 cut(s)	103, 160, 220, 280, 424
AluI	AGCT	5 cut(s)	103, 160, 220, 280, 424
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	3 cut(s)	86, 248, 281
AlwI	GGATC	2 cut(s)	10, 506
Aor13HI	TCCGGA	1 cut(s)	152
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	613
ApoI	RAATTY	2 cut(s)	268, 497
Asp700I	GAANNNNTTC	1 cut(s)	402
AsuHPI	GGTGA	2 cut(s)	49, 638
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	401
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	600
BccI	CCATC	1 cut(s)	530
BclI	TGATCA	1 cut(s)	426
BcoDI	GTCTC	3 cut(s)	86, 248, 281
BfmI	CTRYAG	2 cut(s)	393, 558
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	1 cut(s)	614
BlsI	GCNGC	1 cut(s)	615
BmsI	GCATC	2 cut(s)	109, 249
BpiI	GAAGAC	1 cut(s)	401
BpuEI	CTTGAG	1 cut(s)	392
BsaBI	GATNNNNATC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	123, 649
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 521
Bse1I	ACTGG	1 cut(s)	531
Bse8I	GATNNNNATC	1 cut(s)	20
BseAI	TCCGGA	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	123, 649
BseGI	GGATG	2 cut(s)	514, 634
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	72, 521
BseMII	CTCAG	2 cut(s)	338, 379
BseNI	ACTGG	1 cut(s)	531
BseRI	GAGGAG	5 cut(s)	125, 139, 669, 672, 675
BseXI	GCAGC	1 cut(s)	600
BseYI	CCCAGC	1 cut(s)	325
BshFI	GGCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	153
BsiWI	CGTACG	1 cut(s)	674
BslI	CCNNNNNNNGG	2 cut(s)	72, 521
BsmAI	GTCTC	3 cut(s)	86, 248, 281
BsmBI	CGTCTC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	1 cut(s)	95
Bso31I	GGTCTC	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp13I	TCCGGA	1 cut(s)	152
Bsp143I	GATC	8 cut(s)	15, 21, 312, 343, 358, 426, 511, 670
Bsp19I	CCATGG	1 cut(s)	649
BspACI	CCGC	2 cut(s)	390, 515
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	2 cut(s)	339, 378
BspEI	TCCGGA	1 cut(s)	152
BspHI	TCATGA	2 cut(s)	163, 429
BspMAI	CTGCAG	1 cut(s)	562
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	2 cut(s)	10, 506
BspTNI	GGTCTC	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	531
BssECI	CCNNGG	2 cut(s)	123, 649
BssMI	GATC	8 cut(s)	15, 21, 312, 343, 358, 426, 511, 670
BssT1I	CCWWGG	2 cut(s)	123, 649
Bst4CI	ACNGT	2 cut(s)	80, 109
Bst6I	CTCTTC	2 cut(s)	89, 299
BstDEI	CTNAG	2 cut(s)	347, 365
BstDSI	CCRYGG	1 cut(s)	649
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	514, 634
BstKTI	GATC	8 cut(s)	18, 24, 315, 346, 361, 429, 514, 673
BstMAI	GTCTC	3 cut(s)	86, 248, 281
BstMBI	GATC	8 cut(s)	15, 21, 312, 343, 358, 426, 511, 670
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstPI	GGTNACC	1 cut(s)	55
BstSFI	CTRYAG	2 cut(s)	393, 558
BstV1I	GCAGC	1 cut(s)	600
BstV2I	GAAGAC	1 cut(s)	401
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	649
BtsCI	GGATG	2 cut(s)	514, 634
BtsIMutI	CAGTG	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	43
CciI	TCATGA	2 cut(s)	163, 429
Csp6I	GTAC	3 cut(s)	202, 211, 675
CviAII	CATG	4 cut(s)	139, 164, 430, 650
CviQI	GTAC	3 cut(s)	202, 211, 675
DdeI	CTNAG	2 cut(s)	347, 365
DpnI	GATC	8 cut(s)	17, 23, 314, 345, 360, 428, 513, 672
DpnII	GATC	8 cut(s)	15, 21, 312, 343, 358, 426, 511, 670
Eam1104I	CTCTTC	2 cut(s)	89, 299
EarI	CTCTTC	2 cut(s)	89, 299
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	123, 649
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	86
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	323
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	123, 649
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	2 cut(s)	123, 649
Esp3I	CGTCTC	1 cut(s)	248
FaeI	CATG	4 cut(s)	142, 167, 433, 653
FaiI	YATR	9 cut(s)	140, 165, 252, 431, 495, 506, 522, 552, 651
FatI	CATG	4 cut(s)	138, 163, 429, 649
FbaI	TGATCA	1 cut(s)	426
Fnu4HI	GCNGC	1 cut(s)	614
FokI	GGATG	2 cut(s)	521, 621
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	614
GluI	GCNGC	1 cut(s)	614
GsaI	CCCAGC	1 cut(s)	329
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	4 cut(s)	142, 167, 433, 653
HindIII	AAGCTT	2 cut(s)	158, 218
HinfI	GANTC	7 cut(s)	228, 298, 433, 439, 460, 489, 554
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	2 cut(s)	49, 638
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	5 cut(s)	303, 348, 438, 465, 670
Hpy188III	TCNNGA	7 cut(s)	19, 25, 88, 153, 164, 371, 430
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	3 cut(s)	66, 85, 630
HpyCH4III	ACNGT	2 cut(s)	80, 109
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	4 cut(s)	262, 470, 560, 616
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	2 cut(s)	347, 365
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	4 cut(s)	142, 167, 433, 653
Kpn2I	TCCGGA	1 cut(s)	152
Ksp22I	TGATCA	1 cut(s)	426
Kzo9I	GATC	8 cut(s)	15, 21, 312, 343, 358, 426, 511, 670
LpnPI	CCDG	8 cut(s)	32, 34, 38, 166, 227, 301, 311, 512
Lsp1109I	GCAGC	1 cut(s)	600
LweI	GCATC	2 cut(s)	109, 249
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	3 cut(s)	40, 55, 479
MalI	GATC	8 cut(s)	17, 23, 314, 345, 360, 428, 513, 672
MboI	GATC	8 cut(s)	15, 21, 312, 343, 358, 426, 511, 670
MboII	GAAGA	6 cut(s)	76, 286, 316, 401, 545, 635
MflI	RGATCY	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	2 cut(s)	268, 497
MlyI	GAGTC	2 cut(s)	307, 483
MroI	TCCGGA	1 cut(s)	152
MroXI	GAANNNNTTC	1 cut(s)	402
MseI	TTAA	1 cut(s)	608
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	472
MwoI	GCNNNNNNNGC	1 cut(s)	316
NcoI	CCATGG	1 cut(s)	649
NdeII	GATC	8 cut(s)	15, 21, 312, 343, 358, 426, 511, 670
NlaIII	CATG	4 cut(s)	142, 167, 433, 653
NmuCI	GTSAC	2 cut(s)	40, 55
PagI	TCATGA	2 cut(s)	163, 429
PctI	GAATGC	1 cut(s)	472
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	5 cut(s)	228, 433, 439, 460, 554
Pfl23II	CGTACG	1 cut(s)	674
PkrI	GCNGC	1 cut(s)	615
PleI	GAGTC	2 cut(s)	306, 483
PpsI	GAGTC	2 cut(s)	306, 483
Psp124BI	GAGCTC	1 cut(s)	105
PspEI	GGTNACC	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	325
PspLI	CGTACG	1 cut(s)	674
PsrI	GAACNNNNNNTAC	2 cut(s)	387, 419
PstI	CTGCAG	1 cut(s)	562
PsuI	RGATCY	1 cut(s)	15
RsaI	GTAC	3 cut(s)	203, 212, 676
RsaNI	GTAC	3 cut(s)	202, 211, 675
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	608
SatI	GCNGC	1 cut(s)	614
Sau3AI	GATC	8 cut(s)	15, 21, 312, 343, 358, 426, 511, 670
SchI	GAGTC	2 cut(s)	307, 483
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	2 cut(s)	109, 249
SfcI	CTRYAG	2 cut(s)	393, 558
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	2 cut(s)	268, 497
SsiI	CCGC	2 cut(s)	390, 515
SspI	AATATT	1 cut(s)	548
SstI	GAGCTC	1 cut(s)	105
StyI	CCWWGG	2 cut(s)	123, 649
TaaI	ACNGT	2 cut(s)	80, 109
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	231
TasI	AATT	2 cut(s)	268, 497
TfiI	GAWTC	5 cut(s)	228, 433, 439, 460, 554
Tru1I	TTAA	1 cut(s)	608
Tru9I	TTAA	1 cut(s)	608
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	2 cut(s)	40, 55
TseI	GCWGC	1 cut(s)	613
Tsp45I	GTSAC	2 cut(s)	40, 55
TspDTI	ATGAA	5 cut(s)	152, 160, 446, 510, 597
TspRI	CASTG	1 cut(s)	112
XapI	RAATTY	2 cut(s)	268, 497
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
XmnI	GAANNNNTTC	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.