Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007228

Physical Location & Seq

Genomic Coordinates Forward (+)

62254253 .. 62257055

Gene Structure 2803 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27133

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCGAGAGGTAAGATCCAGATCAAGAGGATAGAGAACGTGACGAATAGGCAGGTCACCTACTCCAAGAGAAGGAACGGCCTATTCAAGAAGGCCAATGAGCTCACTGTTCTCTGTGATGCTAAGGTTTCTCTCCTCATGGTTTCCTCTTCCGGAAAGCTTCATGAATTCATCAGCCCCTCCACCACGACAAAGCAAGTGTACGATGAGTACCAGAAGCTCCTCGGAATTGACCTTTGGAAATCGCACTATGAGACAATGCAAGAAAATTTGAACAAGATGAAAGAGATAAATAAGAGTCTTAGGAGGCAGATCAGCCACAGGGTGGGCGAGTGTTTGAACGATCTGAGATTCGCTGAACTGCACAGTCTTGAGAAAGAAATGGAAAGCGCTGTAGAAGTTGTTCGTAATCGCAAGCTGAAGCTGATCTCCAATCAGATTGATACCAAGAGGAAAAAGATTCGGAATGCAACAGAGTGCAACAGGAGACTCTATGAATATGATGCAATGGAGGAACCGCACTACGGATTGGTTGACGATGGAGGAGATTATTATGATTCTGCAGTCATTGGCTACTCAGCAAATGAAGACCCTCACAATGTATTTCCTTTCAGGCTGCAACCTTCTCATCATCCTAATCTTCACCACGGAGAAGGAAGTTCAGATCTTACGACCTACTCTTTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010093 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

229

Amino Acids

26.57

Weight (kDa)

8.81

Isoelectric Point (pI)

53.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	4.2e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	81 - 165	4.9e-19	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54340
fragaria_vesca	FvH4_2g38970 FvH4_2g38970 FvH4_2g38970
malus_domestica	MD08G1021300.v1.1
prunus_persica	Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1 Prupe.1G371300_v2.0.a1
pyrus_communis	pycom08g01680
rosa_chinensis	RchiOBHm_Chr6g0302061
rosa_laevigata	RLG00000011198
rosa_multiflora	Rmu_ssc0000160.1_g000004
rosa_roxburghii	Rroxscaffold_7G00166120
rosa_rugosa	Rorug06G0311600 Rorug06G0311700 Rorug06G0311800 Rorug06G0311900
rosa_samantha	Rh6AG424400 Rh6BG478100 Rh6CG437300
rosa_wichuraiana	Rw6G036750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccIII	TCCGGA	1 cut(s)	152
AciI	CCGC	1 cut(s)	518
AclWI	GGATC	1 cut(s)	10
AcsI	RAATTY	2 cut(s)	167, 268
AcuI	CTGAAG	1 cut(s)	440
AdeI	CACNNNGTG	1 cut(s)	325
AfaI	GTAC	2 cut(s)	203, 212
AfeI	AGCGCT	1 cut(s)	391
AfiI	CCNNNNNNNGG	3 cut(s)	72, 325, 524
AgsI	TTSAA	3 cut(s)	88, 274, 340
AjuI	GAANNNNNNNTTGG	2 cut(s)	220, 252
AluBI	AGCT	5 cut(s)	103, 160, 220, 418, 424
AluI	AGCT	5 cut(s)	103, 160, 220, 418, 424
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	248, 481
AlwI	GGATC	1 cut(s)	10
Aor13HI	TCCGGA	1 cut(s)	152
Aor51HI	AGCGCT	1 cut(s)	391
AoxI	GGCC	2 cut(s)	79, 93
ApeKI	GCWGC	1 cut(s)	616
ApoI	RAATTY	2 cut(s)	167, 268
ArsI	GACNNNNNNTTYG	1 cut(s)	664
Asp700I	GAANNNNTTC	1 cut(s)	402
AspLEI	GCGC	1 cut(s)	392
AsuHPI	GGTGA	2 cut(s)	49, 635
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	594
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	603
BccI	CCATC	1 cut(s)	533
BceAI	ACGGC	1 cut(s)	94
BcoDI	GTCTC	2 cut(s)	248, 481
BfmI	CTRYAG	2 cut(s)	393, 561
BfoI	RGCGCY	1 cut(s)	393
BfuAI	ACCTGC	1 cut(s)	43
BglII	AGATCT	1 cut(s)	664
BisI	GCNGC	1 cut(s)	617
BlsI	GCNGC	1 cut(s)	618
BmiI	GGNNCC	1 cut(s)	516
BmsI	GCATC	2 cut(s)	109, 493
BpiI	GAAGAC	1 cut(s)	594
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	392
BsaBI	GATNNNNATC	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	223, 646
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 325, 524
Bse3DI	GCAATG	1 cut(s)	513
Bse8I	GATNNNNATC	1 cut(s)	20
BseAI	TCCGGA	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	223, 646
BseGI	GGATG	1 cut(s)	631
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	3 cut(s)	72, 325, 524
BseMI	GCAATG	1 cut(s)	513
BseMII	CTCAG	2 cut(s)	338, 591
BseRI	GAGGAG	3 cut(s)	125, 212, 558
BseXI	GCAGC	1 cut(s)	603
BsgI	GTGCAG	1 cut(s)	347
BshFI	GGCC	2 cut(s)	81, 95
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	3 cut(s)	72, 325, 524
BsmAI	GTCTC	2 cut(s)	248, 481
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	2 cut(s)	81, 95
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp13I	TCCGGA	1 cut(s)	152
Bsp143I	GATC	6 cut(s)	15, 21, 312, 343, 426, 664
BspACI	CCGC	1 cut(s)	518
BspANI	GGCC	2 cut(s)	81, 95
BspCNI	CTCAG	2 cut(s)	339, 590
BspEI	TCCGGA	1 cut(s)	152
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	516
BspMAI	CTGCAG	1 cut(s)	565
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	513
BssECI	CCNNGG	2 cut(s)	223, 646
BssMI	GATC	6 cut(s)	15, 21, 312, 343, 426, 664
Bst4CI	ACNGT	2 cut(s)	109, 368
Bst6I	CTCTTC	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	416
BstDEI	CTNAG	4 cut(s)	123, 302, 347, 577
BstDSI	CCRYGG	1 cut(s)	646
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	631
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	6 cut(s)	18, 24, 315, 346, 429, 667
BstMAI	GTCTC	2 cut(s)	248, 481
BstMBI	GATC	6 cut(s)	15, 21, 312, 343, 426, 664
BstPI	GGTNACC	1 cut(s)	55
BstSFI	CTRYAG	2 cut(s)	393, 561
BstV1I	GCAGC	1 cut(s)	603
BstV2I	GAAGAC	1 cut(s)	594
BstX2I	RGATCY	2 cut(s)	15, 664
BstYI	RGATCY	2 cut(s)	15, 664
BsuRI	GGCC	2 cut(s)	81, 95
BtgI	CCRYGG	1 cut(s)	646
BtsCI	GGATG	1 cut(s)	631
BtsIMutI	CAGTG	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	416
CciI	TCATGA	1 cut(s)	163
CfoI	GCGC	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	202, 211
CviAII	CATG	2 cut(s)	139, 164
CviQI	GTAC	2 cut(s)	202, 211
DdeI	CTNAG	4 cut(s)	123, 302, 347, 577
DpnI	GATC	6 cut(s)	17, 23, 314, 345, 428, 666
DpnII	GATC	6 cut(s)	15, 21, 312, 343, 426, 664
DraIII	CACNNNGTG	1 cut(s)	325
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco47III	AGCGCT	1 cut(s)	391
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	440
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	167
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	2 cut(s)	142, 167
FaiI	YATR	6 cut(s)	140, 165, 252, 495, 501, 555
FatI	CATG	2 cut(s)	138, 163
Fnu4HI	GCNGC	1 cut(s)	617
FokI	GGATG	1 cut(s)	618
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	617
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	1 cut(s)	617
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	2 cut(s)	81, 95
HapII	CCGG	1 cut(s)	153
HhaI	GCGC	1 cut(s)	392
Hin1II	CATG	2 cut(s)	142, 167
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	5 cut(s)	298, 351, 460, 489, 557
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	2 cut(s)	49, 635
Hpy166II	GTNNAC	2 cut(s)	202, 535
Hpy188I	TCNGA	5 cut(s)	227, 348, 438, 465, 664
Hpy188III	TCNNGA	6 cut(s)	19, 25, 88, 153, 164, 371
Hpy8I	GTNNAC	2 cut(s)	202, 535
HpyAV	CCTTC	4 cut(s)	66, 85, 633, 647
HpyCH4III	ACNGT	2 cut(s)	109, 368
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	7 cut(s)	262, 364, 470, 480, 506, 563, 619
HpyF3I	CTNAG	4 cut(s)	123, 302, 347, 577
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	142, 167
HspAI	GCGC	1 cut(s)	390
Kpn2I	TCCGGA	1 cut(s)	152
Kzo9I	GATC	6 cut(s)	15, 21, 312, 343, 426, 664
LmnI	GCTCC	1 cut(s)	225
LpnPI	CCDG	7 cut(s)	32, 38, 166, 227, 307, 469, 598
Lsp1109I	GCAGC	1 cut(s)	603
LweI	GCATC	2 cut(s)	109, 493
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	40, 55
MalI	GATC	6 cut(s)	17, 23, 314, 345, 428, 666
MboI	GATC	6 cut(s)	15, 21, 312, 343, 426, 664
MboII	GAAGA	3 cut(s)	141, 599, 632
MflI	RGATCY	2 cut(s)	15, 664
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	3 cut(s)	167, 228, 268
MlyI	GAGTC	2 cut(s)	307, 483
MroI	TCCGGA	1 cut(s)	152
MroXI	GAANNNNTTC	1 cut(s)	402
MspI	CCGG	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	472
NdeII	GATC	6 cut(s)	15, 21, 312, 343, 426, 664
NlaIII	CATG	2 cut(s)	142, 167
NlaIV	GGNNCC	1 cut(s)	516
NmuCI	GTSAC	2 cut(s)	40, 55
PagI	TCATGA	1 cut(s)	163
PctI	GAATGC	1 cut(s)	472
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	3 cut(s)	351, 460, 557
PflMI	CCANNNNNTGG	1 cut(s)	325
PkrI	GCNGC	1 cut(s)	618
PleI	GAGTC	2 cut(s)	306, 483
PpsI	GAGTC	2 cut(s)	306, 483
Psp124BI	GAGCTC	1 cut(s)	105
PspEI	GGTNACC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	516
PsrI	GAACNNNNNNTAC	2 cut(s)	387, 419
PstI	CTGCAG	1 cut(s)	565
PsuI	RGATCY	2 cut(s)	15, 664
RsaI	GTAC	2 cut(s)	203, 212
RsaNI	GTAC	2 cut(s)	202, 211
SacI	GAGCTC	1 cut(s)	105
SatI	GCNGC	1 cut(s)	617
Sau3AI	GATC	6 cut(s)	15, 21, 312, 343, 426, 664
SchI	GAGTC	2 cut(s)	307, 483
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	2 cut(s)	109, 493
SfcI	CTRYAG	2 cut(s)	393, 561
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	3 cut(s)	167, 228, 268
SsiI	CCGC	1 cut(s)	518
SstI	GAGCTC	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	109, 368
TaiI	ACGT	1 cut(s)	42
TasI	AATT	3 cut(s)	167, 228, 268
TfiI	GAWTC	3 cut(s)	351, 460, 557
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	2 cut(s)	40, 55
TseI	GCWGC	1 cut(s)	616
Tsp45I	GTSAC	2 cut(s)	40, 55
TspDTI	ATGAA	6 cut(s)	152, 160, 180, 296, 510, 600
TspGWI	ACGGA	2 cut(s)	540, 663
TspRI	CASTG	1 cut(s)	112
Van91I	CCANNNNNTGG	1 cut(s)	325
XapI	RAATTY	2 cut(s)	167, 268
XmnI	GAANNNNTTC	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.