AT3G54970

Amino-transferase class IV

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004670
Physical Location & Seq
Reverse (-)
20368127 .. 20370131
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G54970.4

Sequence Viewer

Length: 1062 bp
ATGTCGAATTGCAGATTTCTCTACCACAACGGTGTCGTTTTGGAGGCTCCTCCGGTCACTACCTTCCTTGAATCGCACACGGGTGCTTATACAACGACGAGAACGATAAACAATGGTACTAGTTTCTTGTTCTGGGAGAGACACATGAAGAGACTTTCTAGCTCGATTCGTATTCTTTTGAAGTCAAATCCCGAGCTTTTGTTCAGTTCTGGGTCATCACCGCGGTTTTGGATGAATCAACCAGTTCCTGGTTCGAGTATTTACGATCGAGTCAATGGCTCTATGAGCGAGGCCCTGAAGTCTGTTGTTGTCAAGGAAAGTGAAAGACTCTATGGAGAAGAATTAGCAGTAACTGTTCTTGTTACTGGTAATGTGGAGAAATTGAATAGGTTAGATGTTGGGAACAATTGGGATTTTCTAGATGTGTGGTTGCATATAGGTGCATACTCGCCTTTAGGCCCGTTAGGTGTTGGAGAAAATGCCGCGAGTTTGGCTTTGGTTGGTCGTGGACGAGATGTAGCTGCTGCTAAATACTCAGACTGGGTTAGGCTTAGGAAGCCTCTGGAGAAGTTTAGACCTCCTTTGACCACTGAACTTCTTTTGTCAAACGATGGTGATCATTTGCTTGAGGGCTGCATCACAAACTTTTTCGTAGTTTGCCGCAGGGTGAAGTCATCAGAGAATCTCTACGGCGGGAGTTTGAGCGAGTTTGAGGTGCAGACCGCGCCTATAACTGATGGTGTGCTAGCAGGAGTTATAAGAGACCTTGTCATCGAAGTGTGTTTAAGCGAGGGGATTCCATACCGCGAGAGAGCACCTTCGTGGTCTGAGCGTGAGCTTTGGGAAGAAGCCTTCATTACAAGTAGTCTGAGGATTTTGCAGCATGTAGGGACGATCAAAGTACCCGTTGGTTCAATGGAGGGATTGGCTTGTAACAAACCTGAGGAGATTCAATGGAAGGAGAAAAGGTTTAAGGAAAGACCTGGGATGATCACTGAATTAATCAAGAAAGCGATAATGGAGAGAGGTATTAAAGAAGGGTTCCCGTTGAAGGCCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

353

Amino Acids

39.54

Weight (kDa)

7.02

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 150 - 247 1.4e-09 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 758
AccB7I CCANNNNNTGG 1 cut(s) 248
AccII CGCG 4 cut(s) 223, 485, 725, 807
AciI CCGC 7 cut(s) 221, 223, 483, 661, 693, 723, 805
AcuI CTGAAG 1 cut(s) 317
AfaI GTAC 2 cut(s) 118, 903
AfiI CCNNNNNNNGG 2 cut(s) 248, 1051
AgsI TTSAA 6 cut(s) 71, 181, 385, 915, 953, 1051
AhlI ACTAGT 1 cut(s) 119
AjnI CCWGG 2 cut(s) 247, 982
AleI CACNNNNGTG 3 cut(s) 30, 81, 820
AluBI AGCT 4 cut(s) 162, 196, 521, 838
AluI AGCT 4 cut(s) 162, 196, 521, 838
Alw21I GWGCWC 1 cut(s) 817
Alw26I GTCTC 3 cut(s) 133, 145, 756
AlwNI CAGNNNCTG 2 cut(s) 248, 353
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 3 cut(s) 291, 457, 1053
ApeKI GCWGC 4 cut(s) 521, 524, 633, 880
AseI ATTAAT 1 cut(s) 1001
AspLEI GCGC 1 cut(s) 727
AspS9I GGNCC 2 cut(s) 292, 458
AsuHPI GGTGA 3 cut(s) 210, 626, 679
AsuNHI GCTAGC 1 cut(s) 745
AvaI CYCGRG 1 cut(s) 191
AxyI CCTNAGG 1 cut(s) 942
Bbv12I GWGCWC 1 cut(s) 817
BbvI GCAGC 4 cut(s) 508, 511, 620, 892
BccI CCATC 2 cut(s) 605, 731
BceAI ACGGC 1 cut(s) 706
BciT130I CCWGG 2 cut(s) 249, 984
BclI TGATCA 2 cut(s) 616, 990
BcoDI GTCTC 3 cut(s) 133, 145, 756
BcuI ACTAGT 1 cut(s) 119
BfaI CTAG 4 cut(s) 120, 159, 419, 746
BisI GCNGC 6 cut(s) 483, 522, 525, 634, 661, 881
BlsI GCNGC 6 cut(s) 484, 523, 526, 635, 662, 882
Bme1390I CCNGG 2 cut(s) 249, 984
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 2 cut(s) 292, 458
BmiI GGNNCC 2 cut(s) 48, 1043
BmrFI CCNGG 2 cut(s) 249, 984
BmrI ACTGGG 1 cut(s) 550
BmsI GCATC 1 cut(s) 645
BmtI GCTAGC 1 cut(s) 749
BmuI ACTGGG 1 cut(s) 550
BpmI CTGGAG 1 cut(s) 584
Bpu10I CCTNAGC 1 cut(s) 551
BpuEI CTTGAG 1 cut(s) 647
BsaBI GATNNNNATC 1 cut(s) 615
BsaI GGTCTC 1 cut(s) 756
BsaJI CCNNGG 2 cut(s) 221, 983
BsaWI WCCGGW 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 953, 983
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 1051
Bse1I ACTGG 3 cut(s) 242, 370, 545
Bse21I CCTNAGG 1 cut(s) 942
Bse8I GATNNNNATC 1 cut(s) 615
BseBI CCWGG 2 cut(s) 249, 984
BseDI CCNNGG 2 cut(s) 221, 983
BseGI GGATG 2 cut(s) 237, 993
BseJI GATNNNNATC 1 cut(s) 615
BseLI CCNNNNNNNGG 2 cut(s) 248, 1051
BseMII CTCAG 4 cut(s) 549, 819, 860, 933
BseNI ACTGG 3 cut(s) 242, 370, 545
BseRI GAGGAG 2 cut(s) 39, 959
BseXI GCAGC 4 cut(s) 508, 511, 620, 892
BsgI GTGCAG 1 cut(s) 737
Bsh1236I CGCG 4 cut(s) 223, 485, 725, 807
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 3 cut(s) 293, 459, 1055
BsiEI CGRYCG 1 cut(s) 268
BsiHKAI GWGCWC 1 cut(s) 817
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 1 cut(s) 904
BslI CCNNNNNNNGG 2 cut(s) 248, 1051
BsmAI GTCTC 3 cut(s) 133, 145, 756
BsmFI GGGAC 1 cut(s) 904
BsnI GGCC 3 cut(s) 293, 459, 1055
Bso31I GGTCTC 1 cut(s) 756
BsoBI CYCGRG 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 817
Bsp143I GATC 4 cut(s) 265, 616, 894, 990
BspACI CCGC 7 cut(s) 221, 223, 483, 661, 693, 723, 805
BspANI GGCC 3 cut(s) 293, 459, 1055
BspCNI CTCAG 4 cut(s) 548, 820, 861, 934
BspFNI CGCG 4 cut(s) 223, 485, 725, 807
BspLI GGNNCC 2 cut(s) 48, 1043
BspOI GCTAGC 1 cut(s) 749
BspTNI GGTCTC 1 cut(s) 756
BsrI ACTGG 3 cut(s) 242, 370, 545
BssECI CCNNGG 2 cut(s) 221, 983
BssMI GATC 4 cut(s) 265, 616, 894, 990
Bst2UI CCWGG 2 cut(s) 249, 984
Bst4CI ACNGT 2 cut(s) 32, 355
Bst6I CTCTTC 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 747
BstDEI CTNAG 5 cut(s) 535, 551, 828, 869, 942
BstDSI CCRYGG 1 cut(s) 221
BstF5I GGATG 2 cut(s) 237, 993
BstFNI CGCG 4 cut(s) 223, 485, 725, 807
BstHHI GCGC 1 cut(s) 727
BstKTI GATC 4 cut(s) 268, 619, 897, 993
BstMAI GTCTC 3 cut(s) 133, 145, 756
BstMBI GATC 4 cut(s) 265, 616, 894, 990
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 4 cut(s) 285, 491, 556, 724
BstNI CCWGG 2 cut(s) 249, 984
BstNSI RCATGY 1 cut(s) 887
BstSCI CCNGG 2 cut(s) 247, 982
BstUI CGCG 4 cut(s) 223, 485, 725, 807
BstV1I GCAGC 4 cut(s) 508, 511, 620, 892
Bsu36I CCTNAGG 1 cut(s) 942
BsuRI GGCC 3 cut(s) 293, 459, 1055
BtgI CCRYGG 1 cut(s) 221
BtsCI GGATG 2 cut(s) 237, 993
BtsIMutI CAGTG 2 cut(s) 588, 993
Cac8I GCNNGC 1 cut(s) 747
CaiI CAGNNNCTG 2 cut(s) 248, 353
CfoI GCGC 1 cut(s) 727
Cfr13I GGNCC 2 cut(s) 292, 458
Cfr42I CCGCGG 1 cut(s) 224
Csp6I GTAC 2 cut(s) 117, 902
CviAII CATG 2 cut(s) 145, 884
CviQI GTAC 2 cut(s) 117, 902
DdeI CTNAG 5 cut(s) 535, 551, 828, 869, 942
DpnI GATC 4 cut(s) 267, 618, 896, 992
DpnII GATC 4 cut(s) 265, 616, 894, 990
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco147I AGGCCT 1 cut(s) 1055
Eco31I GGTCTC 1 cut(s) 756
Eco57I CTGAAG 1 cut(s) 317
Eco81I CCTNAGG 1 cut(s) 942
Eco88I CYCGRG 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 292
EcoRII CCWGG 2 cut(s) 247, 982
FaeI CATG 2 cut(s) 148, 887
FaqI GGGAC 1 cut(s) 904
FatI CATG 2 cut(s) 144, 883
FauI CCCGC 1 cut(s) 686
FbaI TGATCA 2 cut(s) 616, 990
Fnu4HI GCNGC 6 cut(s) 483, 522, 525, 634, 661, 881
FokI GGATG 2 cut(s) 244, 1000
Fsp4HI GCNGC 6 cut(s) 483, 522, 525, 634, 661, 881
FspBI CTAG 4 cut(s) 120, 159, 419, 746
GlaI GCGC 1 cut(s) 726
GluI GCNGC 6 cut(s) 483, 522, 525, 634, 661, 881
GsuI CTGGAG 1 cut(s) 584
HaeIII GGCC 3 cut(s) 293, 459, 1055
HapII CCGG 1 cut(s) 53
HhaI GCGC 1 cut(s) 727
Hin1II CATG 2 cut(s) 148, 887
Hin6I GCGC 1 cut(s) 725
HinP1I GCGC 1 cut(s) 725
HinfI GANTC 8 cut(s) 71, 166, 235, 270, 327, 682, 796, 949
HpaII CCGG 1 cut(s) 53
HphI GGTGA 3 cut(s) 210, 626, 679
Hpy166II GTNNAC 1 cut(s) 509
Hpy188I TCNGA 4 cut(s) 538, 679, 829, 870
Hpy188III TCNNGA 4 cut(s) 191, 419, 563, 1006
Hpy8I GTNNAC 1 cut(s) 509
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 6 cut(s) 73, 828, 862, 952, 1031, 1045
HpyCH4III ACNGT 2 cut(s) 32, 355
HpyCH4V TGCA 6 cut(s) 12, 433, 443, 636, 718, 880
HpyF10VI GCNNNNNNNGC 4 cut(s) 285, 491, 556, 724
HpyF3I CTNAG 5 cut(s) 535, 551, 828, 869, 942
Hsp92II CATG 2 cut(s) 148, 887
HspAI GCGC 1 cut(s) 725
Ksp22I TGATCA 2 cut(s) 616, 990
KspI CCGCGG 1 cut(s) 224
Kzo9I GATC 4 cut(s) 265, 616, 894, 990
LmnI GCTCC 1 cut(s) 52
Lsp1109I GCAGC 4 cut(s) 508, 511, 620, 892
LweI GCATC 1 cut(s) 645
MaeI CTAG 4 cut(s) 120, 159, 419, 746
MaeIII GTNAC 4 cut(s) 55, 349, 361, 932
MalI GATC 4 cut(s) 267, 618, 896, 992
MboI GATC 4 cut(s) 265, 616, 894, 990
MboII GAAGA 3 cut(s) 160, 350, 857
MfeI CAATTG 1 cut(s) 406
MhlI GDGCHC 1 cut(s) 817
MluCI AATT 5 cut(s) 7, 341, 380, 406, 998
MlyI GAGTC 2 cut(s) 279, 321
MmeI TCCRAC 1 cut(s) 451
MseI TTAA 4 cut(s) 785, 972, 1001, 1032
MslI CAYNNNNRTG 5 cut(s) 30, 81, 438, 776, 820
MspA1I CMGCKG 1 cut(s) 223
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 2 cut(s) 249, 984
MunI CAATTG 1 cut(s) 406
MvaI CCWGG 2 cut(s) 249, 984
MvnI CGCG 4 cut(s) 223, 485, 725, 807
MwoI GCNNNNNNNGC 4 cut(s) 285, 491, 556, 724
NdeII GATC 4 cut(s) 265, 616, 894, 990
NheI GCTAGC 1 cut(s) 745
NlaIII CATG 2 cut(s) 148, 887
NlaIV GGNNCC 2 cut(s) 48, 1043
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 1 cut(s) 887
OliI CACNNNNGTG 3 cut(s) 30, 81, 820
PceI AGGCCT 1 cut(s) 1055
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PfeI GAWTC 6 cut(s) 71, 166, 235, 682, 796, 949
PflFI GACNNNGTC 1 cut(s) 767
PflMI CCANNNNNTGG 1 cut(s) 248
PkrI GCNGC 6 cut(s) 484, 523, 526, 635, 662, 882
Ple19I CGATCG 1 cut(s) 268
PleI GAGTC 2 cut(s) 278, 321
PpsI GAGTC 2 cut(s) 278, 321
PshBI ATTAAT 1 cut(s) 1001
PsiI TTATAA 1 cut(s) 758
Psp6I CCWGG 2 cut(s) 247, 982
PspGI CCWGG 2 cut(s) 247, 982
PspN4I GGNNCC 2 cut(s) 48, 1043
PspPI GGNCC 2 cut(s) 292, 458
PstNI CAGNNNCTG 2 cut(s) 248, 353
PsyI GACNNNGTC 1 cut(s) 767
PvuI CGATCG 1 cut(s) 268
RsaI GTAC 2 cut(s) 118, 903
RsaNI GTAC 2 cut(s) 117, 902
RseI CAYNNNNRTG 5 cut(s) 30, 81, 438, 776, 820
SacII CCGCGG 1 cut(s) 224
SaqAI TTAA 4 cut(s) 785, 972, 1001, 1032
SatI GCNGC 6 cut(s) 483, 522, 525, 634, 661, 881
Sau3AI GATC 4 cut(s) 265, 616, 894, 990
Sau96I GGNCC 2 cut(s) 292, 458
SchI GAGTC 2 cut(s) 279, 321
ScrFI CCNGG 2 cut(s) 249, 984
SduI GDGCHC 1 cut(s) 817
SfaNI GCATC 1 cut(s) 645
Sfr303I CCGCGG 1 cut(s) 224
SgrBI CCGCGG 1 cut(s) 224
SmiMI CAYNNNNRTG 5 cut(s) 30, 81, 438, 776, 820
SmlI CTYRAG 1 cut(s) 626
SmoI CTYRAG 1 cut(s) 626
SpeI ACTAGT 1 cut(s) 119
Sse9I AATT 5 cut(s) 7, 341, 380, 406, 998
SseBI AGGCCT 1 cut(s) 1055
SsiI CCGC 7 cut(s) 221, 223, 483, 661, 693, 723, 805
SspMI CTAG 4 cut(s) 120, 159, 419, 746
StuI AGGCCT 1 cut(s) 1055
StyD4I CCNGG 2 cut(s) 247, 982
TaaI ACNGT 2 cut(s) 32, 355
TaqI TCGA 5 cut(s) 5, 164, 254, 268, 774
TasI AATT 5 cut(s) 7, 341, 380, 406, 998
TauI GCSGC 2 cut(s) 485, 663
TfiI GAWTC 6 cut(s) 71, 166, 235, 682, 796, 949
Tru1I TTAA 4 cut(s) 785, 972, 1001, 1032
Tru9I TTAA 4 cut(s) 785, 972, 1001, 1032
TscAI CASTG 2 cut(s) 595, 1000
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 4 cut(s) 521, 524, 633, 880
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 3 cut(s) 161, 248, 844
TspRI CASTG 2 cut(s) 595, 1000
Tth111I GACNNNGTC 1 cut(s) 767
Van91I CCANNNNNTGG 1 cut(s) 248
VspI ATTAAT 1 cut(s) 1001
XbaI TCTAGA 1 cut(s) 418
XceI RCATGY 1 cut(s) 887
XspI CTAG 4 cut(s) 120, 159, 419, 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.