FvH4_7g20280

Amino-transferase class IV

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004670
Physical Location & Seq
Reverse (-)
16518730 .. 16522582
3853 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20280.t2

Sequence Viewer

Length: 1026 bp
ATGACCACTACTCCTCTCAGGCTCTTACTCACCAACGGCGTCGTTTCCGACCCTTCCACCACTCCTCCTGTCACCACCTTCCTCGAGACCCACCCAGGGGCTTACACCACGTCTCGCACTCACAACAACGCCTCATTGGTGTTGTTCTGGGAGAGGCACTTGAAACGGCTCACGGACTCCGTCAGGATTCTATACAATGCCAATCCTCAGCTTCTTTTCGGACCCAACAAGACTTTGGTTCCATTACCATCACTGGCGGCTGATTCTCTTTTGCTTCGGTCAAGGGTTGGTGATCTTGTTAATGATTCGATGAACAAAGTGCTGCCGGTTGCTTTGGAGGGGAGGAGTGACGGGGAGGAGCTGTCGATTACTACTTTGGTGAGTGGCAATTTGGGGAGATTGGGTGAGAGTGGGGACTTGGAGCTTGACAGAAATGGTGAGGCTCTTGATGTGAGCATTTACGTTGGGATTTATGTGCCGCCTGTGTTTGGTGTCAGTAGAAACGGTGCGCAGTTGGCTGTGGTGGGTCGTGGGAGAGATGTCGCTGCTGCTAAGTACTCAGATTGGGTAAGGATAAGGAAGCCTTTGGAGAGGTTGAGGCCACCCTCAGGGACCGAGCTCTTGTTGTCCAACGATGGTGATAGGATTCTTGAAGGCAGCGTGTCAAACTTCTTTGTGGTCTGCCGAAAGGAAGACAATGAAGCTAAGGAGCAAACTATTGACTGTTTTGAAGTACAGACAGCTCCTATTAGTGATGGTGTCCTACCAGGAATTATACGCCAACTAGTCATTGAAGTATGCTTGAGCAAGGGAATCCCTTTTCGAGAAGTTGCACCACTGTGGTCAGAGCATGAATTTTGGGAAGAGGCATTCATTACAAGTAGCTTAAGACTTATGCAGCATGCGGAGACTGTTCGTGCTCCAAGTTCATGGGAATCACTGCATGGCAACTCTTGGAAGGATATATCATGGAAGGAGAAGCAGTTTAAGAAGGGTCCTGGGATGATTACTACAATAATTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

342

Amino Acids

37.7

Weight (kDa)

5.78

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 206 - 300 3.9e-10 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 510
AciI CCGC 3 cut(s) 257, 479, 905
AcsI RAATTY 1 cut(s) 854
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 2 cut(s) 557, 735
AfiI CCNNNNNNNGG 4 cut(s) 96, 97, 488, 608
AflII CTTAAG 1 cut(s) 886
AgsI TTSAA 4 cut(s) 163, 653, 731, 794
AhlI ACTAGT 1 cut(s) 784
AjiI CACGTC 1 cut(s) 111
AjnI CCWGG 3 cut(s) 94, 766, 997
AleI CACNNNNGTG 1 cut(s) 838
AluBI AGCT 7 cut(s) 211, 361, 424, 619, 704, 743, 885
AluI AGCT 7 cut(s) 211, 361, 424, 619, 704, 743, 885
Alw21I GWGCWC 2 cut(s) 621, 922
Alw26I GTCTC 3 cut(s) 80, 117, 902
Ama87I CYCGRG 1 cut(s) 83
AoxI GGCC 1 cut(s) 599
ApeKI GCWGC 5 cut(s) 322, 545, 548, 657, 898
ApoI RAATTY 1 cut(s) 854
AspLEI GCGC 1 cut(s) 511
AspS9I GGNCC 3 cut(s) 221, 612, 995
AsuHPI GGTGA 7 cut(s) 22, 64, 302, 391, 416, 449, 650
AvaI CYCGRG 1 cut(s) 83
AvaII GGWCC 3 cut(s) 221, 612, 995
AxyI CCTNAGG 1 cut(s) 607
BanII GRGCYC 1 cut(s) 621
BbsI GAAGAC 1 cut(s) 699
Bbv12I GWGCWC 2 cut(s) 621, 922
BbvCI CCTCAGC 1 cut(s) 207
BbvI GCAGC 5 cut(s) 309, 532, 535, 669, 910
BccI CCATC 3 cut(s) 256, 629, 749
BceAI ACGGC 2 cut(s) 52, 182
BciT130I CCWGG 3 cut(s) 96, 768, 999
BcoDI GTCTC 3 cut(s) 80, 117, 902
BcuI ACTAGT 1 cut(s) 784
BfaI CTAG 1 cut(s) 785
BfrI CTTAAG 1 cut(s) 886
BisI GCNGC 7 cut(s) 258, 323, 479, 546, 549, 658, 899
BlsI GCNGC 7 cut(s) 259, 324, 480, 547, 550, 659, 900
BmcAI AGTACT 1 cut(s) 557
Bme1390I CCNGG 3 cut(s) 96, 768, 999
Bme18I GGWCC 3 cut(s) 221, 612, 995
BmeT110I CYCGRG 1 cut(s) 83
BmgBI CACGTC 1 cut(s) 111
BmgT120I GGNCC 3 cut(s) 221, 612, 995
BmiI GGNNCC 4 cut(s) 223, 240, 613, 996
BmrFI CCNGG 3 cut(s) 96, 768, 999
BpiI GAAGAC 1 cut(s) 699
Bpu10I CCTNAGC 2 cut(s) 207, 705
BpuEI CTTGAG 1 cut(s) 823
BsaHI GRCGYC 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 3 cut(s) 94, 95, 998
BsaXI ACNNNNNCTCC 9 cut(s) 25, 49, 79, 347, 377, 388, 418, 968, 998
Bsc4I CCNNNNNNNGG 4 cut(s) 96, 97, 488, 608
Bse118I RCCGGY 1 cut(s) 325
Bse1I ACTGG 1 cut(s) 258
Bse21I CCTNAGG 1 cut(s) 607
BseBI CCWGG 3 cut(s) 96, 768, 999
BseDI CCNNGG 3 cut(s) 94, 95, 998
BseGI GGATG 1 cut(s) 1008
BseLI CCNNNNNNNGG 4 cut(s) 96, 97, 488, 608
BseMII CTCAG 4 cut(s) 31, 221, 573, 621
BseNI ACTGG 1 cut(s) 258
BseRI GAGGAG 3 cut(s) 54, 358, 371
BseXI GCAGC 5 cut(s) 309, 532, 535, 669, 910
BshFI GGCC 1 cut(s) 601
BsiHKAI GWGCWC 2 cut(s) 621, 922
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 1 cut(s) 326
BslFI GGGAC 2 cut(s) 428, 625
BslI CCNNNNNNNGG 4 cut(s) 96, 97, 488, 608
BsmAI GTCTC 3 cut(s) 80, 117, 902
BsmBI CGTCTC 1 cut(s) 117
BsmFI GGGAC 2 cut(s) 428, 625
BsmI GAATGC 1 cut(s) 869
BsnI GGCC 1 cut(s) 601
Bso31I GGTCTC 1 cut(s) 80
BsoBI CYCGRG 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 621, 922
Bsp143I GATC 1 cut(s) 292
BspACI CCGC 3 cut(s) 257, 479, 905
BspANI GGCC 1 cut(s) 601
BspCNI CTCAG 4 cut(s) 30, 220, 572, 620
BspLI GGNNCC 4 cut(s) 223, 240, 613, 996
BspTI CTTAAG 1 cut(s) 886
BspTNI GGTCTC 1 cut(s) 80
BsrFI RCCGGY 1 cut(s) 325
BsrI ACTGG 1 cut(s) 258
BssAI RCCGGY 1 cut(s) 325
BssECI CCNNGG 3 cut(s) 94, 95, 998
BssMI GATC 1 cut(s) 292
BssNI GRCGYC 1 cut(s) 39
Bst2UI CCWGG 3 cut(s) 96, 768, 999
Bst4CI ACNGT 4 cut(s) 506, 725, 840, 913
Bst6I CTCTTC 1 cut(s) 858
BstACI GRCGYC 1 cut(s) 39
BstAFI CTTAAG 1 cut(s) 886
BstC8I GCNNGC 1 cut(s) 903
BstDEI CTNAG 6 cut(s) 17, 207, 552, 559, 607, 705
BstF5I GGATG 1 cut(s) 1008
BstHHI GCGC 1 cut(s) 511
BstKTI GATC 1 cut(s) 295
BstMAI GTCTC 3 cut(s) 80, 117, 902
BstMBI GATC 1 cut(s) 292
BstMWI GCNNNNNNNGC 1 cut(s) 515
BstNI CCWGG 3 cut(s) 96, 768, 999
BstNSI RCATGY 1 cut(s) 905
BstSCI CCNGG 3 cut(s) 94, 766, 997
BstV1I GCAGC 5 cut(s) 309, 532, 535, 669, 910
BstV2I GAAGAC 1 cut(s) 699
BstXI CCANNNNNNTGG 1 cut(s) 930
Bsu36I CCTNAGG 1 cut(s) 607
BsuRI GGCC 1 cut(s) 601
BtrI CACGTC 1 cut(s) 111
BtsCI GGATG 1 cut(s) 1008
BtsI GCAGTG 1 cut(s) 938
BtsIMutI CAGTG 3 cut(s) 251, 836, 938
Cac8I GCNNGC 1 cut(s) 903
CfoI GCGC 1 cut(s) 511
Cfr10I RCCGGY 1 cut(s) 325
Cfr13I GGNCC 3 cut(s) 221, 612, 995
CseI GACGC 1 cut(s) 28
Csp6I GTAC 2 cut(s) 556, 734
CviAII CATG 5 cut(s) 851, 902, 930, 944, 969
CviQI GTAC 2 cut(s) 556, 734
DdeI CTNAG 6 cut(s) 17, 207, 552, 559, 607, 705
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
Eam1104I CTCTTC 1 cut(s) 858
EarI CTCTTC 1 cut(s) 858
Ecl136II GAGCTC 1 cut(s) 619
Eco24I GRGCYC 1 cut(s) 621
Eco31I GGTCTC 1 cut(s) 80
Eco47I GGWCC 3 cut(s) 221, 612, 995
Eco53kI GAGCTC 1 cut(s) 619
Eco81I CCTNAGG 1 cut(s) 607
Eco88I CYCGRG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 619
EcoO109I RGGNCCY 1 cut(s) 995
EcoRII CCWGG 3 cut(s) 94, 766, 997
EcoT38I GRGCYC 1 cut(s) 621
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 5 cut(s) 854, 905, 933, 947, 972
FalI AAGNNNNNCTT 2 cut(s) 568, 600
FaqI GGGAC 2 cut(s) 428, 625
FatI CATG 5 cut(s) 850, 901, 929, 943, 968
Fnu4HI GCNGC 7 cut(s) 258, 323, 479, 546, 549, 658, 899
FokI GGATG 1 cut(s) 1015
FriOI GRGCYC 1 cut(s) 621
Fsp4HI GCNGC 7 cut(s) 258, 323, 479, 546, 549, 658, 899
FspBI CTAG 1 cut(s) 785
FspI TGCGCA 1 cut(s) 510
GlaI GCGC 1 cut(s) 510
GluI GCNGC 7 cut(s) 258, 323, 479, 546, 549, 658, 899
HaeIII GGCC 1 cut(s) 601
HapII CCGG 1 cut(s) 326
HgaI GACGC 1 cut(s) 28
HhaI GCGC 1 cut(s) 511
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 5 cut(s) 854, 905, 933, 947, 972
Hin6I GCGC 1 cut(s) 509
HinP1I GCGC 1 cut(s) 509
HinfI GANTC 7 cut(s) 176, 187, 263, 305, 646, 813, 935
HpaII CCGG 1 cut(s) 326
HphI GGTGA 7 cut(s) 22, 64, 302, 391, 416, 449, 650
Hpy188I TCNGA 4 cut(s) 49, 221, 562, 847
Hpy188III TCNNGA 5 cut(s) 85, 184, 446, 650, 824
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 6 cut(s) 63, 88, 647, 952, 967, 985
HpyCH4III ACNGT 4 cut(s) 506, 725, 840, 913
HpyCH4IV ACGT 2 cut(s) 110, 462
HpyCH4V TGCA 3 cut(s) 833, 898, 943
HpyF10VI GCNNNNNNNGC 1 cut(s) 515
HpyF3I CTNAG 6 cut(s) 17, 207, 552, 559, 607, 705
HpySE526I ACGT 2 cut(s) 110, 462
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 5 cut(s) 854, 905, 933, 947, 972
HspAI GCGC 1 cut(s) 509
Kzo9I GATC 1 cut(s) 292
LmnI GCTCC 5 cut(s) 358, 421, 709, 748, 925
Lsp1109I GCAGC 5 cut(s) 309, 532, 535, 669, 910
MaeI CTAG 1 cut(s) 785
MaeII ACGT 2 cut(s) 110, 462
MaeIII GTNAC 2 cut(s) 70, 347
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 2 cut(s) 704, 875
MhlI GDGCHC 2 cut(s) 621, 922
MluCI AATT 4 cut(s) 388, 771, 854, 1017
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 2 cut(s) 72, 654
MseI TTAA 3 cut(s) 300, 887, 987
MslI CAYNNNNRTG 1 cut(s) 838
MspCI CTTAAG 1 cut(s) 886
MspI CCGG 1 cut(s) 326
MspR9I CCNGG 3 cut(s) 96, 768, 999
Mva1269I GAATGC 1 cut(s) 869
MvaI CCWGG 3 cut(s) 96, 768, 999
MwoI GCNNNNNNNGC 1 cut(s) 515
NdeII GATC 1 cut(s) 292
NlaIII CATG 5 cut(s) 854, 905, 933, 947, 972
NlaIV GGNNCC 4 cut(s) 223, 240, 613, 996
NmuCI GTSAC 2 cut(s) 70, 347
NsbI TGCGCA 1 cut(s) 510
NspI RCATGY 1 cut(s) 905
OliI CACNNNNGTG 1 cut(s) 838
PaeI GCATGC 1 cut(s) 905
PaeR7I CTCGAG 1 cut(s) 83
PasI CCCWGGG 1 cut(s) 95
PctI GAATGC 1 cut(s) 869
PfeI GAWTC 6 cut(s) 187, 263, 305, 646, 813, 935
PflFI GACNNNGTC 1 cut(s) 179
PkrI GCNGC 7 cut(s) 259, 324, 480, 547, 550, 659, 900
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
PpuMI RGGWCCY 1 cut(s) 995
Psp124BI GAGCTC 1 cut(s) 621
Psp5II RGGWCCY 1 cut(s) 995
Psp6I CCWGG 3 cut(s) 94, 766, 997
PspGI CCWGG 3 cut(s) 94, 766, 997
PspN4I GGNNCC 4 cut(s) 223, 240, 613, 996
PspPI GGNCC 3 cut(s) 221, 612, 995
PspPPI RGGWCCY 1 cut(s) 995
PsyI GACNNNGTC 1 cut(s) 179
RsaI GTAC 2 cut(s) 557, 735
RsaNI GTAC 2 cut(s) 556, 734
RseI CAYNNNNRTG 1 cut(s) 838
SacI GAGCTC 1 cut(s) 621
SaqAI TTAA 3 cut(s) 300, 887, 987
SatI GCNGC 7 cut(s) 258, 323, 479, 546, 549, 658, 899
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 3 cut(s) 221, 612, 995
ScaI AGTACT 1 cut(s) 557
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 3 cut(s) 96, 768, 999
SduI GDGCHC 2 cut(s) 621, 922
Sfr274I CTCGAG 1 cut(s) 83
SinI GGWCC 3 cut(s) 221, 612, 995
SlaI CTCGAG 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 838
SmlI CTYRAG 3 cut(s) 83, 802, 886
SmoI CTYRAG 3 cut(s) 83, 802, 886
SpeI ACTAGT 1 cut(s) 784
SphI GCATGC 1 cut(s) 905
Sse9I AATT 4 cut(s) 388, 771, 854, 1017
SsiI CCGC 3 cut(s) 257, 479, 905
SspMI CTAG 1 cut(s) 785
SstI GAGCTC 1 cut(s) 621
StyD4I CCNGG 3 cut(s) 94, 766, 997
TaaI ACNGT 4 cut(s) 506, 725, 840, 913
TaiI ACGT 2 cut(s) 113, 465
TaqI TCGA 4 cut(s) 84, 308, 365, 823
TaqII GACCGA 2 cut(s) 267, 629
TasI AATT 4 cut(s) 388, 771, 854, 1017
TatI WGTACW 2 cut(s) 555, 733
TauI GCSGC 2 cut(s) 260, 481
TfiI GAWTC 6 cut(s) 187, 263, 305, 646, 813, 935
Tru1I TTAA 3 cut(s) 300, 887, 987
Tru9I TTAA 3 cut(s) 300, 887, 987
TscAI CASTG 3 cut(s) 258, 843, 945
TseFI GTSAC 2 cut(s) 70, 347
TseI GCWGC 5 cut(s) 322, 545, 548, 657, 898
Tsp45I GTSAC 2 cut(s) 70, 347
TspDTI ATGAA 5 cut(s) 326, 714, 862, 867, 918
TspGWI ACGGA 2 cut(s) 169, 188
TspRI CASTG 3 cut(s) 258, 843, 945
Tth111I GACNNNGTC 1 cut(s) 179
Vha464I CTTAAG 1 cut(s) 886
VpaK11BI GGWCC 3 cut(s) 221, 612, 995
XapI RAATTY 1 cut(s) 854
XceI RCATGY 1 cut(s) 905
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
XhoI CTCGAG 1 cut(s) 83
XspI CTAG 1 cut(s) 785
ZrmI AGTACT 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.