Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004670

Physical Location & Seq

Genomic Coordinates Reverse (-)

56233251 .. 56236916

Gene Structure 3666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G028550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGACGACTACTCCTCTCAGGTTGTTGCTCACCAACGGCATCGTCTCCAACCCTGCCAACACTCCTCCCGTCACCACCTTCCTCGAGACCCACCCAGGGGCTTACACGACGACTCGCACTCACAACAACGCCTCGTTCGTGTTGTTTTGGGATAGGCACTTGAAAAGGCTCGCGGAGTCCGTGAGAATCCTGTACAATGCCGATCCTCAACTTCTGTTCGGACCCAACAAGACTTCGCTTCCATTACCGTCTCTTGCATCCAATTCTCTTTTGCTCCACGATCTCGTGAATGATTCGATGAAAAAAGTGCTGCCAATTGCTTTGGAGGGGAGGAGTGACGGGGAGGAACTGTCGATTACTACTTTGGTCAGTGGCAATTGGGGGAAATTGGAGCTAGAAAAAATTGGCGGGGCTCTTGATGTGAGCATTTACGTTGGGATTTATGTGCCTTCTGTGTTTGGTGTCAGAGGAAACGGTGCGCAGTTGGCTGTGGTGGGTCGTGGGAGAGATGTTGCTGCTGCTAAGTACTCGGATTGGGTAAGGATTAGGAAGTCTTTGGAGAGGTTGAGGCCGCCCTCGGGGACCGAGCTCTGTTGTCCAATGATGGGGATCGGATTCTTGAAGGCAGCCTGTCAAACTTCTTTGTGGTCCGCCGAAAGCTGCTTTTTCAGGATGACAATGAAGCTAAAGAGCAAACTATCCACTGTTTTGAAGTACAGACAGCTCCTATTAGCGAGGGTGTCCTACCAGGAATTATACGCCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

255

Amino Acids

28.12

Weight (kDa)

9.58

Isoelectric Point (pI)

25.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54970 AT3G54970 AT3G54970 AT3G54970 AT3G54970 AT3G54970
fragaria_vesca	FvH4_7g20280 FvH4_7g20280 FvH4_7g20280 FvH4_7g20280 FvH4_7g20280
malus_domestica	MD01G1112500.v1.1
prunus_persica	Prupe.2G216400_v2.0.a1 Prupe.2G216400_v2.0.a1 Prupe.2G216400_v2.0.a1 Prupe.2G216400_v2.0.a1 Prupe.2G216400_v2.0.a1 Prupe.2G219400_v2.0.a1
pyrus_communis	pycom01g14100
rosa_chinensis	RchiOBHm_Chr1g0364231
rosa_laevigata	RLG00000027504
rosa_multiflora	Rmu_sc0000071.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292550
rosa_rugosa	Rorug01G0315100 Rorug01G0315100 Rorug01G0315200
rosa_samantha	Rh1AG322300 Rh1BG285200 Rh1CG301600 Rh1DG316600
rosa_wichuraiana	Rw1G028550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	480
AccII	CGCG	1 cut(s)	173
AciI	CCGC	4 cut(s)	173, 408, 572, 651
AclWI	GGATC	2 cut(s)	197, 617
AfaI	GTAC	3 cut(s)	194, 527, 716
AfiI	CCNNNNNNNGG	4 cut(s)	96, 97, 578, 605
AgsI	TTSAA	3 cut(s)	163, 622, 712
AjnI	CCWGG	2 cut(s)	94, 747
AluBI	AGCT	5 cut(s)	394, 589, 660, 685, 724
AluI	AGCT	5 cut(s)	394, 589, 660, 685, 724
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	3 cut(s)	49, 80, 255
AlwI	GGATC	2 cut(s)	197, 617
Ama87I	CYCGRG	2 cut(s)	83, 577
AoxI	GGCC	1 cut(s)	569
ApeKI	GCWGC	5 cut(s)	310, 515, 518, 626, 660
AspLEI	GCGC	1 cut(s)	481
AspS9I	GGNCC	3 cut(s)	221, 582, 648
AsuHPI	GGTGA	2 cut(s)	22, 64
AvaI	CYCGRG	2 cut(s)	83, 577
AvaII	GGWCC	3 cut(s)	221, 582, 648
BanII	GRGCYC	2 cut(s)	415, 591
BauI	CACGAG	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	591
BbvI	GCAGC	5 cut(s)	297, 502, 505, 638, 647
BccI	CCATC	1 cut(s)	598
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	2 cut(s)	96, 749
BcoDI	GTCTC	3 cut(s)	49, 80, 255
BfaI	CTAG	2 cut(s)	395, 766
BisI	GCNGC	6 cut(s)	311, 516, 519, 572, 627, 661
BlsI	GCNGC	6 cut(s)	312, 517, 520, 573, 628, 662
BmcAI	AGTACT	1 cut(s)	527
Bme1390I	CCNGG	2 cut(s)	96, 749
Bme18I	GGWCC	3 cut(s)	221, 582, 648
BmeT110I	CYCGRG	2 cut(s)	83, 577
BmgT120I	GGNCC	3 cut(s)	221, 582, 648
BmiI	GGNNCC	2 cut(s)	223, 583
BmrFI	CCNGG	2 cut(s)	96, 749
BmsI	GCATC	2 cut(s)	48, 266
BsaBI	GATNNNNATC	1 cut(s)	608
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	3 cut(s)	94, 95, 576
BsaXI	ACNNNNNCTCC	3 cut(s)	25, 335, 365
Bsc4I	CCNNNNNNNGG	4 cut(s)	96, 97, 578, 605
Bse8I	GATNNNNATC	1 cut(s)	608
BseBI	CCWGG	2 cut(s)	96, 749
BseDI	CCNNGG	3 cut(s)	94, 95, 576
BseGI	GGATG	2 cut(s)	257, 678
BseJI	GATNNNNATC	1 cut(s)	608
BseLI	CCNNNNNNNGG	4 cut(s)	96, 97, 578, 605
BseMII	CTCAG	1 cut(s)	31
BseRI	GAGGAG	2 cut(s)	54, 346
BseXI	GCAGC	5 cut(s)	297, 502, 505, 638, 647
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	571
BsiHKAI	GWGCWC	1 cut(s)	591
BsiHKCI	CYCGRG	2 cut(s)	83, 577
BslFI	GGGAC	1 cut(s)	595
BslI	CCNNNNNNNGG	4 cut(s)	96, 97, 578, 605
BsmAI	GTCTC	3 cut(s)	49, 80, 255
BsmBI	CGTCTC	2 cut(s)	49, 255
BsmFI	GGGAC	1 cut(s)	595
BsnI	GGCC	1 cut(s)	571
Bso31I	GGTCTC	1 cut(s)	80
BsoBI	CYCGRG	2 cut(s)	83, 577
Bsp1286I	GDGCHC	2 cut(s)	415, 591
Bsp1407I	TGTACA	1 cut(s)	192
Bsp143I	GATC	3 cut(s)	202, 280, 609
BspACI	CCGC	4 cut(s)	173, 408, 572, 651
BspANI	GGCC	1 cut(s)	571
BspCNI	CTCAG	1 cut(s)	30
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	2 cut(s)	223, 583
BspPI	GGATC	2 cut(s)	197, 617
BspTNI	GGTCTC	1 cut(s)	80
BsrGI	TGTACA	1 cut(s)	192
BssECI	CCNNGG	3 cut(s)	94, 95, 576
BssMI	GATC	3 cut(s)	202, 280, 609
BssSI	CACGAG	1 cut(s)	284
Bst2BI	CACGAG	1 cut(s)	284
Bst2UI	CCWGG	2 cut(s)	96, 749
Bst4CI	ACNGT	4 cut(s)	249, 351, 476, 706
BstAUI	TGTACA	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	2 cut(s)	17, 522
BstF5I	GGATG	2 cut(s)	257, 678
BstFNI	CGCG	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	3 cut(s)	205, 283, 612
BstMAI	GTCTC	3 cut(s)	49, 80, 255
BstMBI	GATC	3 cut(s)	202, 280, 609
BstMWI	GCNNNNNNNGC	1 cut(s)	485
BstNI	CCWGG	2 cut(s)	96, 749
BstSCI	CCNGG	2 cut(s)	94, 747
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	5 cut(s)	297, 502, 505, 638, 647
BsuRI	GGCC	1 cut(s)	571
BtsCI	GGATG	2 cut(s)	257, 678
BtsIMutI	CAGTG	2 cut(s)	376, 702
Cac8I	GCNNGC	1 cut(s)	171
CfoI	GCGC	1 cut(s)	481
Cfr13I	GGNCC	3 cut(s)	221, 582, 648
Csp6I	GTAC	3 cut(s)	193, 526, 715
CviQI	GTAC	3 cut(s)	193, 526, 715
DdeI	CTNAG	2 cut(s)	17, 522
DpnI	GATC	3 cut(s)	204, 282, 611
DpnII	GATC	3 cut(s)	202, 280, 609
EciI	GGCGGA	1 cut(s)	640
Ecl136II	GAGCTC	1 cut(s)	589
Eco24I	GRGCYC	2 cut(s)	415, 591
Eco31I	GGTCTC	1 cut(s)	80
Eco47I	GGWCC	3 cut(s)	221, 582, 648
Eco53kI	GAGCTC	1 cut(s)	589
Eco88I	CYCGRG	2 cut(s)	83, 577
EcoICRI	GAGCTC	1 cut(s)	589
EcoRII	CCWGG	2 cut(s)	94, 747
EcoT38I	GRGCYC	2 cut(s)	415, 591
Esp3I	CGTCTC	2 cut(s)	49, 255
FaiI	YATR	2 cut(s)	444, 757
FaqI	GGGAC	1 cut(s)	595
FauI	CCCGC	1 cut(s)	401
Fnu4HI	GCNGC	6 cut(s)	311, 516, 519, 572, 627, 661
FokI	GGATG	2 cut(s)	244, 685
FriOI	GRGCYC	2 cut(s)	415, 591
Fsp4HI	GCNGC	6 cut(s)	311, 516, 519, 572, 627, 661
FspBI	CTAG	2 cut(s)	395, 766
FspI	TGCGCA	1 cut(s)	480
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	6 cut(s)	311, 516, 519, 572, 627, 661
HaeIII	GGCC	1 cut(s)	571
HhaI	GCGC	1 cut(s)	481
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HinfI	GANTC	5 cut(s)	112, 176, 186, 293, 615
HphI	GGTGA	2 cut(s)	22, 64
Hpy188I	TCNGA	4 cut(s)	221, 467, 532, 614
Hpy188III	TCNNGA	5 cut(s)	85, 286, 416, 619, 670
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	3 cut(s)	88, 459, 616
HpyCH4III	ACNGT	4 cut(s)	249, 351, 476, 706
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	485
HpyF3I	CTNAG	2 cut(s)	17, 522
HpySE526I	ACGT	1 cut(s)	432
HspAI	GCGC	1 cut(s)	479
Kzo9I	GATC	3 cut(s)	202, 280, 609
LmnI	GCTCC	3 cut(s)	279, 391, 729
LpnPI	CCDG	9 cut(s)	4, 66, 81, 108, 203, 643, 655, 734, 761
Lsp1109I	GCAGC	5 cut(s)	297, 502, 505, 638, 647
LweI	GCATC	2 cut(s)	48, 266
MaeI	CTAG	2 cut(s)	395, 766
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	2 cut(s)	70, 335
MalI	GATC	3 cut(s)	204, 282, 611
MboI	GATC	3 cut(s)	202, 280, 609
MfeI	CAATTG	2 cut(s)	315, 376
MhlI	GDGCHC	2 cut(s)	415, 591
MluCI	AATT	6 cut(s)	262, 315, 376, 386, 402, 752
MlyI	GAGTC	2 cut(s)	106, 185
MmeI	TCCRAC	1 cut(s)	72
MspR9I	CCNGG	2 cut(s)	96, 749
MunI	CAATTG	2 cut(s)	315, 376
MvaI	CCWGG	2 cut(s)	96, 749
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	485
NdeII	GATC	3 cut(s)	202, 280, 609
NlaIV	GGNNCC	2 cut(s)	223, 583
NmuCI	GTSAC	2 cut(s)	70, 335
NsbI	TGCGCA	1 cut(s)	480
PaeR7I	CTCGAG	1 cut(s)	83
PasI	CCCWGGG	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 177
PfeI	GAWTC	3 cut(s)	186, 293, 615
PkrI	GCNGC	6 cut(s)	312, 517, 520, 573, 628, 662
PleI	GAGTC	2 cut(s)	106, 184
PpsI	GAGTC	2 cut(s)	106, 184
Psp124BI	GAGCTC	1 cut(s)	591
Psp6I	CCWGG	2 cut(s)	94, 747
PspGI	CCWGG	2 cut(s)	94, 747
PspN4I	GGNNCC	2 cut(s)	223, 583
PspPI	GGNCC	3 cut(s)	221, 582, 648
RsaI	GTAC	3 cut(s)	194, 527, 716
RsaNI	GTAC	3 cut(s)	193, 526, 715
SacI	GAGCTC	1 cut(s)	591
SatI	GCNGC	6 cut(s)	311, 516, 519, 572, 627, 661
Sau3AI	GATC	3 cut(s)	202, 280, 609
Sau96I	GGNCC	3 cut(s)	221, 582, 648
ScaI	AGTACT	1 cut(s)	527
SchI	GAGTC	2 cut(s)	106, 185
ScrFI	CCNGG	2 cut(s)	96, 749
SduI	GDGCHC	2 cut(s)	415, 591
SetI	ASST	9 cut(s)	23, 80, 396, 435, 566, 591, 662, 687, 726
SfaNI	GCATC	2 cut(s)	48, 266
Sfr274I	CTCGAG	1 cut(s)	83
SinI	GGWCC	3 cut(s)	221, 582, 648
SlaI	CTCGAG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	6 cut(s)	262, 315, 376, 386, 402, 752
SsiI	CCGC	4 cut(s)	173, 408, 572, 651
SspMI	CTAG	2 cut(s)	395, 766
SstI	GAGCTC	1 cut(s)	591
StyD4I	CCNGG	2 cut(s)	94, 747
TaaI	ACNGT	4 cut(s)	249, 351, 476, 706
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	3 cut(s)	84, 296, 353
TaqII	GACCGA	1 cut(s)	599
TasI	AATT	6 cut(s)	262, 315, 376, 386, 402, 752
TatI	WGTACW	3 cut(s)	192, 525, 714
TauI	GCSGC	1 cut(s)	574
TfiI	GAWTC	3 cut(s)	186, 293, 615
TscAI	CASTG	2 cut(s)	376, 709
TseFI	GTSAC	2 cut(s)	70, 335
TseI	GCWGC	5 cut(s)	310, 515, 518, 626, 660
Tsp45I	GTSAC	2 cut(s)	70, 335
TspDTI	ATGAA	2 cut(s)	314, 695
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	2 cut(s)	376, 709
VpaK11BI	GGWCC	3 cut(s)	221, 582, 648
XhoI	CTCGAG	1 cut(s)	83
XspI	CTAG	2 cut(s)	395, 766
ZrmI	AGTACT	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.