Rorug01G0315200

Amino-transferase class IV

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000612
Physical Location & Seq
Reverse (-)
43308417 .. 43313092
4676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0315200.1

Sequence Viewer

Length: 3192 bp
ATGGAACCCCGATTTGCGCGGACCAAACAGAAATCCGACGTGGCAGCCGTCCTCCGCAAATCATGGTACCGTCTCCGCCTCTCCGTCCGTCACCCCTCCCGCGCCGCCACGTGGGACGCCATCGTCCTCACGGCCGCCAGCCCCGAGCAAGCCCAGCTCTACCACTGGCAGCTCCACCGCGCCAAGCGTATGGGCCGCATCGCCCCCTGCACCGTCACCCTCGCCGTCCCCGATCCGCTCGGCCAGCGCATCGGCTCCGGCGCCGCCACTCTCCACGCCATTCGCGCCCTCGCCCTCCACTACCGCAAATTAAGGGACCCAAACTCCCAGGTGGAGCGAAGTGGAGATGGTGAAGTGGTTAGCTACATTGCGAAAAGGCATATATTGTTGCTTCATGCTGGAGGGGACTCTAAAAGGGTGCCGTGGGCGAATCCCATGGGGAAAGTTTTCCTGCCACTTCCTTATCTGGCAGCTGATGACCCTGATGGGCCGGTCCCGCTGCTTTTCGATCACATACTTGCAATTGCTTCTTGTGCAAGACAAGCTTTTAAAAATGAAGGGGGAATGTTTACCATGACTGGAGACGTACTTCCATGTTTTGATGCCTCCAATTTGGTGCTTCCAGAGGACACATCCTGTATCATCACAGTTCCTATCACCCTCGATATTGCGTCTAACCATGGTGTTGTTGTGGCATCTAAGAGTGGAAATGCTGAAAATAATGTCAATCTAGTTGATAACCTCTTACAAAAACCTAGTGTAGAGGAACTTGTTAAGCACAATGCAATTCTTGACGATGGCAGAGCACTTCTTGATACTGGATTAATAGCGGTTAGAGGTAAAGGGTGGGAGGAGCTTGTTACACTTGCGTGTTCCTGCCAGCCAATGATTTCAGAACTTCTGAAGACCAAAAAGGAGATGAGTTTATATGAAGATCTTGTAGCAGCTTGGGTACCTGCAAAGCATGACTGGTTGCGGCTACGCCCCTCAGGCGAAGAACTTGTCAGCAGATTAGGAAAGCAGAAGATGTACAGCTACTGTGCTTATGATTTGTCGTTCTTACATTTTGGAACCTCCAGTGAAGTTTTGGATCATCTGAGTGGAGCTGGTTCGGGACTGGTGAGTCGAAGACACCTTTGTTCTATCCCGGCAACCACTCTATCTGACATAGCAGCATCTGCTGTTATTCTTGCTAGCAAAATTGCACCTGCTGTCTCAATTGGGGAAGATTCTCTTATATATGACTCAACCATTTCCAGTGGGATACAAATTGGTTCCTTGTCCATAGTTGTTGGTATTAATGTTCCAGTCATAAGTGGTAATGCAGCAGAAAATCCATTTAGGTTCATACTTCCGGATCGTCATTGTCTTTGGGAGGTTCCCTTAGTAGGATGCACTGGAAAAGTAATAGTGTATTGTGGCCTTCATGACAACCCCAAAATTTCACTCTCTAAAGACGGAACTTTTTGTGGGAAGCCCTGGAGGAAGGTCTTGTATGATTTAGGAATTGAAGAGAATGATCTTTGGAGCTCAACTGGTAATCAGGAAAAGTGTTTATGGAATGCAAAGATATTCCCTATTCTTTCTTATTTTGAGATGCTAAGTGTGGCAACTTGGTTGATGGGCTTGAGTGATAAAAAATCTGAGGAGTTGCTTTTGCTGTGGAGAAGTTCATCTCGTGTCAGCTTGGAGGAGTTGCATAGATCAATTGATTTTTCAAAAATGTGTACAGGTTCCATTAATCATCAAGCAGATCTTGCGGCTGCAGTCGCTAAATCTTGCATTAATTATGGCATGCTTGGATGCAACTTGTATCGTTTGTGTGAAGAAATTCTGCAAATGGAAAATGTAGGAGTCAAGATATGTAATGATTTTCTAGATCTTTGTCCCACACTCTTGGAGCAGAACAGTAAGATTCTTCCCAAAAGCCGTGCATACCAGGTTCAAGTTGATCTTCTTCGAGCATGCAGCAACGAAACAGCAGCATGTAAATTGGAGAACAAAGTTTGGGCTGCAGTTGCTGATGAAACTGCTTCAGCAGTAAAATATGGTTTCAAAGAACATCTCTCAGATGCCCCCATAAATATACCTCCTCCAGCTTGTAAGAACAATGATTTTAATGGCTCTGTGGATGATTTTTTCAATCCTAGAAGGGTGAAGGTTGAATTGCCGGTTCGTGTTGATTTTGTTGGGGGTTGGAGTGACACTCCTCCATGGAGCTTGGAGCGTGCTGGTTGTGTCTTGAATATGGCAATAAGTTTGGAAGGTTCTCTTCCAATTGGCACCATCATAGAGACAACAAAAGCTACTGGTGTCTTTGTCAGTGATGATGCTGGAAATGAGTTGCACATTGAAGACTTAACCTCAATTGCTACTCCATTTGACCACAGTGATCCATTTCGGCTTGTTAAATCTGCACTGCTTGTGACTGGCATAATTCATGAAAATGTTCTGGCATCAGTGGGCTTGAAGATTACAACTTGGGCCCATGTTCCTCGTGGCAGCGGCTTGGGGACTTCTAGCATCTTGGCAGCTGCTGTTGTGAAAGCACTTCTGCAGATTACTGACGGTGATGAAAGTAATGAAAATGTTGCACGACTTGTTCTGGTATTAGAACAGCTTATGGGGACAGGTGGTGGCTGGCAGGATCAAATTGGGGGTCTCTACCCTGGCATTAAGTTTACTGCAAGTTTTCCTGGAATTCCGCTGCGACTACAAGTCATCCCACTTTTGGCTTCTCCTCCATTAGTTTCAGAGTTGCAGCAACGCTTGCTTGTGGTATTTACTGGTCAAGTTCGACTAGCACACCAAGTCTTGCAAAAGGTGGTAATCCGATACCTTCGAAGGGACAGCCTTCTCGTATCCAGCATCAAGCGCCTTGCCGAACTGGCTAAGATCGGGAGAGAAGCTCTGATGAATGGCGACATAGACGACCTTGGGGACATAATGCTAGAGGCATGGAGGTTACATCAAGAACTCGACCCTTACTGCAGTAACGAGTTTGTCGATAGACTCTTTGAATTCGCACACCCCTATTGCTCCGGCTACAAGCTCGTCGGTGCCGGTGGTGGAGGATTTGCCTTGTTACTCGCCAAGGATGCCGAGCATGCAAAGAAACTAACACATTTGCTGGAAAAAGATTCAAACTTTGACGTCAAAGTATACAACTGGAACATCTCCTTAGATAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

1063

Amino Acids

116.36

Weight (kDa)

6.24

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fucose_pyrophosphorylase PF07959 123 - 529 1.7e-115 Fucose pyrophosphorylase domain
GHMP_kinases_N PF00288 818 - 888 1.8e-11 GHMP kinases N terminal domain
GHMP_kinases_C PF08544 969 - 1040 8.4e-08 GHMP kinases C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1216
AasI GACNNNNNNGTC 2 cut(s) 122, 1122
AatII GACGTC 1 cut(s) 3156
Acc36I ACCTGC 2 cut(s) 964, 1216
Acc65I GGTACC 2 cut(s) 66, 952
AccB1I GGYRCC 6 cut(s) 66, 260, 418, 952, 2282, 3059
AccBSI CCGCTC 1 cut(s) 238
AccI GTMKAC 1 cut(s) 3162
AccII CGCG 4 cut(s) 19, 102, 180, 285
AccIII TCCGGA 1 cut(s) 1354
AclWI GGATC 5 cut(s) 227, 1098, 1365, 2387, 2655
AcoI YGGCCR 2 cut(s) 132, 241
AcsI RAATTY 4 cut(s) 1440, 1830, 2700, 3020
AcuI CTGAAG 2 cut(s) 923, 2019
AcvI CACGTG 1 cut(s) 111
AcyI GRCGYC 3 cut(s) 117, 261, 3153
AfaI GTAC 5 cut(s) 68, 588, 954, 1031, 1729
AfiI CCNNNNNNNGG 4 cut(s) 111, 1388, 2731, 2845
AhdI GACNNNNNGTC 1 cut(s) 2717
AjiI CACGTC 1 cut(s) 40
AjnI CCWGG 5 cut(s) 327, 1478, 1938, 2668, 2695
AleI CACNNNNGTG 1 cut(s) 868
Alw21I GWGCWC 2 cut(s) 808, 1532
Alw26I GTCTC 5 cut(s) 77, 576, 1219, 2288, 2666
AlwI GGATC 5 cut(s) 227, 1098, 1365, 2387, 2655
AlwNI CAGNNNCTG 4 cut(s) 1038, 1178, 2021, 2537
Ama87I CYCGRG 1 cut(s) 143
Aor13HI TCCGGA 1 cut(s) 1354
AoxI GGCC 6 cut(s) 132, 193, 241, 488, 1420, 2484
ApaI GGGCCC 1 cut(s) 2488
ApoI RAATTY 4 cut(s) 1440, 1830, 2700, 3020
ArsI GACNNNNNNTTYG 4 cut(s) 987, 1019, 2644, 2676
AseI ATTAAT 4 cut(s) 824, 1299, 1740, 1785
Asp700I GAANNNNTTC 3 cut(s) 446, 1830, 2448
Asp718I GGTACC 2 cut(s) 66, 952
AspLEI GCGC 7 cut(s) 19, 104, 182, 249, 263, 287, 2877
AspS9I GGNCC 7 cut(s) 21, 193, 316, 488, 493, 2484, 2485
AsuC2I CCSGG 1 cut(s) 1148
AsuHPI GGTGA 7 cut(s) 83, 208, 362, 649, 1132, 2167, 2582
AsuII TTCGAA 1 cut(s) 2842
AsuNHI GCTAGC 1 cut(s) 1193
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 3 cut(s) 21, 316, 493
AxyI CCTNAGG 1 cut(s) 988
BaeGI GKGCMC 1 cut(s) 2488
BanI GGYRCC 6 cut(s) 66, 260, 418, 952, 2282, 3059
BanII GRGCYC 2 cut(s) 1532, 2488
BauI CACGAG 2 cut(s) 1677, 2496
BbrPI CACGTG 1 cut(s) 111
BbsI GAAGAC 3 cut(s) 911, 1135, 2361
Bbv12I GWGCWC 2 cut(s) 808, 1532
BccI CCATC 6 cut(s) 128, 341, 479, 791, 1615, 2294
BceAI ACGGC 5 cut(s) 32, 147, 209, 406, 1914
BciT130I CCWGG 5 cut(s) 329, 1480, 1940, 2670, 2697
BciVI GTATCC 2 cut(s) 1257, 2872
BcnI CCSGG 1 cut(s) 1148
BcoDI GTCTC 5 cut(s) 77, 576, 1219, 2288, 2666
BfaI CTAG 8 cut(s) 731, 756, 1194, 1877, 2148, 2520, 2801, 2951
BfmI CTRYAG 4 cut(s) 1764, 2013, 2555, 2989
BfoI RGCGCY 2 cut(s) 264, 2878
BfuAI ACCTGC 2 cut(s) 964, 1216
BfuI GTATCC 2 cut(s) 1257, 2872
BglI GCCNNNNNGGC 2 cut(s) 990, 2888
BglII AGATCT 3 cut(s) 934, 1753, 1879
Bme1390I CCNGG 6 cut(s) 329, 1148, 1480, 1940, 2670, 2697
Bme18I GGWCC 3 cut(s) 21, 316, 493
BmeRI GACNNNNNGTC 1 cut(s) 2717
BmeT110I CYCGRG 1 cut(s) 143
BmgBI CACGTC 1 cut(s) 40
BmgT120I GGNCC 7 cut(s) 21, 193, 316, 488, 493, 2484, 2485
BmrFI CCNGG 6 cut(s) 329, 1148, 1480, 1940, 2670, 2697
BmtI GCTAGC 1 cut(s) 1197
BpiI GAAGAC 3 cut(s) 911, 1135, 2361
BplI GAGNNNNNCTC 4 cut(s) 2191, 2223, 2893, 2925
BpmI CTGGAG 5 cut(s) 420, 600, 1060, 1501, 2079
Bpu14I TTCGAA 1 cut(s) 2842
BpuEI CTTGAG 1 cut(s) 1648
BpuMI CCSGG 1 cut(s) 1148
BsaAI YACGTR 1 cut(s) 111
BsaHI GRCGYC 3 cut(s) 117, 261, 3153
BsaI GGTCTC 1 cut(s) 2666
BsaJI CCNNGG 9 cut(s) 327, 422, 435, 679, 1478, 2213, 2668, 2935, 3093
BsaWI WCCGGW 1 cut(s) 1354
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 4 cut(s) 111, 1388, 2731, 2845
Bse118I RCCGGY 3 cut(s) 490, 2170, 3062
Bse21I CCTNAGG 1 cut(s) 988
Bse3DI GCAATG 1 cut(s) 366
BseAI TCCGGA 1 cut(s) 1354
BseBI CCWGG 5 cut(s) 329, 1480, 1940, 2670, 2697
BseDI CCNNGG 9 cut(s) 327, 422, 435, 679, 1478, 2213, 2668, 2935, 3093
BseGI GGATG 6 cut(s) 632, 1397, 1808, 2137, 2721, 3103
BseLI CCNNNNNNNGG 4 cut(s) 111, 1388, 2731, 2845
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 4 cut(s) 1002, 1088, 1635, 2082
BseRI GAGGAG 6 cut(s) 866, 1661, 1706, 2082, 2199, 2730
BseSI GKGCMC 1 cut(s) 2488
BseX3I CGGCCG 1 cut(s) 132
BseYI CCCAGC 1 cut(s) 153
BsgI GTGCAG 2 cut(s) 193, 2400
Bsh1236I CGCG 4 cut(s) 19, 102, 180, 285
Bsh1285I CGRYCG 1 cut(s) 135
BshFI GGCC 6 cut(s) 134, 195, 243, 490, 1422, 2486
BshNI GGYRCC 6 cut(s) 66, 260, 418, 952, 2282, 3059
BsiEI CGRYCG 1 cut(s) 135
BsiHKAI GWGCWC 2 cut(s) 808, 1532
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 7 cut(s) 258, 491, 1148, 1355, 2171, 3042, 3063
BslI CCNNNNNNNGG 4 cut(s) 111, 1388, 2731, 2845
BsmAI GTCTC 5 cut(s) 77, 576, 1219, 2288, 2666
BsmBI CGTCTC 2 cut(s) 77, 576
BsmI GAATGC 1 cut(s) 1567
BsnI GGCC 6 cut(s) 134, 195, 243, 490, 1422, 2486
Bso31I GGTCTC 1 cut(s) 2666
BsoBI CYCGRG 1 cut(s) 143
Bsp119I TTCGAA 1 cut(s) 2842
Bsp120I GGGCCC 1 cut(s) 2484
Bsp1286I GDGCHC 3 cut(s) 808, 1532, 2488
Bsp13I TCCGGA 1 cut(s) 1354
Bsp1407I TGTACA 2 cut(s) 1029, 1727
Bsp19I CCATGG 3 cut(s) 435, 679, 2213
BspANI GGCC 6 cut(s) 134, 195, 243, 490, 1422, 2486
BspCNI CTCAG 4 cut(s) 1001, 1089, 1636, 2081
BspEI TCCGGA 1 cut(s) 1354
BspFNI CGCG 4 cut(s) 19, 102, 180, 285
BspHI TCATGA 2 cut(s) 1426, 2440
BspMAI CTGCAG 4 cut(s) 1768, 2017, 2559, 2993
BspMI ACCTGC 2 cut(s) 964, 1216
BspOI GCTAGC 1 cut(s) 1197
BspPI GGATC 5 cut(s) 227, 1098, 1365, 2387, 2655
BspT104I TTCGAA 1 cut(s) 2842
BspT107I GGYRCC 6 cut(s) 66, 260, 418, 952, 2282, 3059
BspTNI GGTCTC 1 cut(s) 2666
BsrBI CCGCTC 1 cut(s) 238
BsrDI GCAATG 1 cut(s) 366
BsrFI RCCGGY 3 cut(s) 490, 2170, 3062
BsrGI TGTACA 2 cut(s) 1029, 1727
BssAI RCCGGY 3 cut(s) 490, 2170, 3062
BssECI CCNNGG 9 cut(s) 327, 422, 435, 679, 1478, 2213, 2668, 2935, 3093
BssNAI GTATAC 1 cut(s) 3163
BssNI GRCGYC 3 cut(s) 117, 261, 3153
BssSI CACGAG 2 cut(s) 1677, 2496
BssT1I CCWWGG 5 cut(s) 435, 679, 2213, 2935, 3093
Bst1107I GTATAC 1 cut(s) 3163
Bst2BI CACGAG 2 cut(s) 1677, 2496
Bst2UI CCWGG 5 cut(s) 329, 1480, 1940, 2670, 2697
Bst4CI ACNGT 7 cut(s) 71, 214, 649, 1040, 1910, 2390, 2570
Bst6I CTCTTC 2 cut(s) 1506, 2277
BstACI GRCGYC 3 cut(s) 117, 261, 3153
BstAPI GCANNNNNTGC 3 cut(s) 1178, 1757, 2770
BstAUI TGTACA 2 cut(s) 1029, 1727
BstBAI YACGTR 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 2842
BstDEI CTNAG 9 cut(s) 699, 988, 1097, 1384, 1601, 1644, 2068, 2892, 3181
BstDSI CCRYGG 4 cut(s) 422, 435, 679, 2213
BstF5I GGATG 6 cut(s) 632, 1397, 1808, 2137, 2721, 3103
BstFNI CGCG 4 cut(s) 19, 102, 180, 285
BstH2I RGCGCY 2 cut(s) 264, 2878
BstHHI GCGC 7 cut(s) 19, 104, 182, 249, 263, 287, 2877
BstMAI GTCTC 5 cut(s) 77, 576, 1219, 2288, 2666
BstMCI CGRYCG 1 cut(s) 135
BstNI CCWGG 5 cut(s) 329, 1480, 1940, 2670, 2697
BstNSI RCATGY 4 cut(s) 1798, 1968, 1989, 3110
BstSCI CCNGG 6 cut(s) 327, 1146, 1478, 1938, 2668, 2695
BstSFI CTRYAG 4 cut(s) 1764, 2013, 2555, 2989
BstSLI GKGCMC 1 cut(s) 2488
BstUI CGCG 4 cut(s) 19, 102, 180, 285
BstV2I GAAGAC 3 cut(s) 911, 1135, 2361
BstX2I RGATCY 3 cut(s) 934, 1753, 1879
BstXI CCANNNNNNTGG 2 cut(s) 190, 1897
BstYI RGATCY 3 cut(s) 934, 1753, 1879
BstZ17I GTATAC 1 cut(s) 3163
BstZI CGGCCG 1 cut(s) 132
Bsu36I CCTNAGG 1 cut(s) 988
BsuI GTATCC 2 cut(s) 1257, 2872
BsuRI GGCC 6 cut(s) 134, 195, 243, 490, 1422, 2486
BtgI CCRYGG 4 cut(s) 422, 435, 679, 2213
BtgZI GCGATG 1 cut(s) 184
BtrI CACGTC 1 cut(s) 40
BtsCI GGATG 6 cut(s) 632, 1397, 1808, 2137, 2721, 3103
BtsI GCAGTG 1 cut(s) 2417
BtsIMutI CAGTG 8 cut(s) 163, 1084, 1264, 1395, 2329, 2395, 2417, 2466
BveI ACCTGC 2 cut(s) 964, 1216
CaiI CAGNNNCTG 4 cut(s) 1038, 1178, 2021, 2537
CciI TCATGA 2 cut(s) 1426, 2440
CfoI GCGC 7 cut(s) 19, 104, 182, 249, 263, 287, 2877
Cfr10I RCCGGY 3 cut(s) 490, 2170, 3062
Cfr13I GGNCC 7 cut(s) 21, 193, 316, 488, 493, 2484, 2485
CseI GACGC 2 cut(s) 125, 660
CsiI ACCWGGT 1 cut(s) 1938
Csp6I GTAC 5 cut(s) 67, 587, 953, 1030, 1728
CviQI GTAC 5 cut(s) 67, 587, 953, 1030, 1728
DdeI CTNAG 9 cut(s) 699, 988, 1097, 1384, 1601, 1644, 2068, 2892, 3181
DinI GGCGCC 1 cut(s) 262
DraI TTTAAA 1 cut(s) 550
DrdI GACNNNNNNGTC 2 cut(s) 122, 1122
DriI GACNNNNNGTC 1 cut(s) 2717
DseDI GACNNNNNNGTC 2 cut(s) 122, 1122
EaeI YGGCCR 2 cut(s) 132, 241
EagI CGGCCG 1 cut(s) 132
Eam1104I CTCTTC 2 cut(s) 1506, 2277
Eam1105I GACNNNNNGTC 1 cut(s) 2717
EarI CTCTTC 2 cut(s) 1506, 2277
EciI GGCGGA 1 cut(s) 65
Ecl136II GAGCTC 1 cut(s) 1530
EclXI CGGCCG 1 cut(s) 132
Eco130I CCWWGG 5 cut(s) 435, 679, 2213, 2935, 3093
Eco24I GRGCYC 2 cut(s) 1532, 2488
Eco31I GGTCTC 1 cut(s) 2666
Eco47I GGWCC 3 cut(s) 21, 316, 493
Eco52I CGGCCG 1 cut(s) 132
Eco53kI GAGCTC 1 cut(s) 1530
Eco57I CTGAAG 2 cut(s) 923, 2019
Eco72I CACGTG 1 cut(s) 111
Eco81I CCTNAGG 1 cut(s) 988
Eco88I CYCGRG 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 1530
EcoO109I RGGNCCY 1 cut(s) 316
EcoRI GAATTC 2 cut(s) 2700, 3020
EcoRII CCWGG 5 cut(s) 327, 1478, 1938, 2668, 2695
EcoT14I CCWWGG 5 cut(s) 435, 679, 2213, 2935, 3093
EcoT38I GRGCYC 2 cut(s) 1532, 2488
EgeI GGCGCC 1 cut(s) 262
EheI GGCGCC 1 cut(s) 262
ErhI CCWWGG 5 cut(s) 435, 679, 2213, 2935, 3093
Esp3I CGTCTC 2 cut(s) 77, 576
FauI CCCGC 2 cut(s) 107, 504
FblI GTMKAC 1 cut(s) 3162
FokI GGATG 6 cut(s) 619, 1404, 1815, 2144, 2708, 3110
FriOI GRGCYC 2 cut(s) 1532, 2488
FspBI CTAG 8 cut(s) 731, 756, 1194, 1877, 2148, 2520, 2801, 2951
GlaI GCGC 7 cut(s) 18, 103, 181, 248, 262, 286, 2876
GsaI CCCAGC 1 cut(s) 157
GsuI CTGGAG 5 cut(s) 420, 600, 1060, 1501, 2079
HaeII RGCGCY 2 cut(s) 264, 2878
HaeIII GGCC 6 cut(s) 134, 195, 243, 490, 1422, 2486
HapII CCGG 7 cut(s) 258, 491, 1148, 1355, 2171, 3042, 3063
HgaI GACGC 2 cut(s) 125, 660
HhaI GCGC 7 cut(s) 19, 104, 182, 249, 263, 287, 2877
Hin1I GRCGYC 3 cut(s) 117, 261, 3153
Hin6I GCGC 7 cut(s) 17, 102, 180, 247, 261, 285, 2875
HinP1I GCGC 7 cut(s) 17, 102, 180, 247, 261, 285, 2875
HindIII AAGCTT 1 cut(s) 543
HinfI GANTC 9 cut(s) 407, 430, 1123, 1229, 1244, 1854, 1915, 3012, 3140
HpaII CCGG 7 cut(s) 258, 491, 1148, 1355, 2171, 3042, 3063
HphI GGTGA 7 cut(s) 83, 208, 362, 649, 1132, 2167, 2582
Hpy166II GTNNAC 4 cut(s) 570, 1728, 2682, 3163
Hpy8I GTNNAC 4 cut(s) 570, 1728, 2682, 3163
Hpy99I CGWCG 2 cut(s) 41, 3059
HpyAV CCTTC 9 cut(s) 551, 1433, 1480, 2145, 2152, 2258, 2838, 2849, 2864
HpyCH4III ACNGT 7 cut(s) 71, 214, 649, 1040, 1910, 2390, 2570
HpyCH4IV ACGT 4 cut(s) 39, 110, 585, 3153
HpyF3I CTNAG 9 cut(s) 699, 988, 1097, 1384, 1601, 1644, 2068, 2892, 3181
HpySE526I ACGT 4 cut(s) 39, 110, 585, 3153
Hsp92I GRCGYC 3 cut(s) 117, 261, 3153
HspAI GCGC 7 cut(s) 17, 102, 180, 247, 261, 285, 2875
KasI GGCGCC 1 cut(s) 260
KflI GGGWCCC 1 cut(s) 316
Kpn2I TCCGGA 1 cut(s) 1354
KpnI GGTACC 2 cut(s) 70, 956
MabI ACCWGGT 1 cut(s) 1938
MaeI CTAG 8 cut(s) 731, 756, 1194, 1877, 2148, 2520, 2801, 2951
MaeII ACGT 4 cut(s) 39, 110, 585, 3153
MaeIII GTNAC 8 cut(s) 89, 214, 859, 2201, 2425, 2964, 2993, 3084
MbiI CCGCTC 1 cut(s) 238
MfeI CAATTG 5 cut(s) 522, 1218, 1707, 2277, 2367
MflI RGATCY 3 cut(s) 934, 1753, 1879
MhlI GDGCHC 3 cut(s) 808, 1532, 2488
Mly113I GGCGCC 1 cut(s) 261
MlyI GAGTC 5 cut(s) 401, 1132, 1238, 1863, 3006
MmeI TCCRAC 2 cut(s) 60, 2177
MroI TCCGGA 1 cut(s) 1354
MroXI GAANNNNTTC 3 cut(s) 446, 1830, 2448
MslI CAYNNNNRTG 3 cut(s) 868, 1098, 2445
MspA1I CMGCKG 5 cut(s) 473, 499, 2505, 2534, 2707
MspI CCGG 7 cut(s) 258, 491, 1148, 1355, 2171, 3042, 3063
MspR9I CCNGG 6 cut(s) 329, 1148, 1480, 1940, 2670, 2697
MunI CAATTG 5 cut(s) 522, 1218, 1707, 2277, 2367
Mva1269I GAATGC 1 cut(s) 1567
MvaI CCWGG 5 cut(s) 329, 1480, 1940, 2670, 2697
MvnI CGCG 4 cut(s) 19, 102, 180, 285
NarI GGCGCC 1 cut(s) 261
NciI CCSGG 1 cut(s) 1148
NcoI CCATGG 3 cut(s) 435, 679, 2213
NheI GCTAGC 1 cut(s) 1193
NmeAIII GCCGAG 2 cut(s) 219, 3127
NmuCI GTSAC 4 cut(s) 89, 214, 2201, 2425
NspI RCATGY 4 cut(s) 1798, 1968, 1989, 3110
NspV TTCGAA 1 cut(s) 2842
OliI CACNNNNGTG 1 cut(s) 868
PaeI GCATGC 3 cut(s) 1798, 1968, 3110
PagI TCATGA 2 cut(s) 1426, 2440
PaqCI CACCTGC 1 cut(s) 1216
PcsI WCGNNNNNNNCGW 3 cut(s) 45, 228, 3003
PctI GAATGC 1 cut(s) 1567
PdmI GAANNNNTTC 3 cut(s) 446, 1830, 2448
PfeI GAWTC 4 cut(s) 430, 1229, 1915, 3140
PfoI TCCNGGA 1 cut(s) 2695
PleI GAGTC 5 cut(s) 401, 1131, 1238, 1862, 3006
PluTI GGCGCC 1 cut(s) 264
PmaCI CACGTG 1 cut(s) 111
PmlI CACGTG 1 cut(s) 111
PpsI GAGTC 5 cut(s) 401, 1131, 1238, 1862, 3006
Ppu21I YACGTR 1 cut(s) 111
PpuMI RGGWCCY 1 cut(s) 316
PshBI ATTAAT 4 cut(s) 824, 1299, 1740, 1785
Psp124BI GAGCTC 1 cut(s) 1532
Psp5II RGGWCCY 1 cut(s) 316
Psp6I CCWGG 5 cut(s) 327, 1478, 1938, 2668, 2695
PspCI CACGTG 1 cut(s) 111
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 5 cut(s) 327, 1478, 1938, 2668, 2695
PspOMI GGGCCC 1 cut(s) 2484
PspPI GGNCC 7 cut(s) 21, 193, 316, 488, 493, 2484, 2485
PspPPI RGGWCCY 1 cut(s) 316
PstI CTGCAG 4 cut(s) 1768, 2017, 2559, 2993
PstNI CAGNNNCTG 4 cut(s) 1038, 1178, 2021, 2537
PsuI RGATCY 3 cut(s) 934, 1753, 1879
PvuII CAGCTG 2 cut(s) 473, 2534
RsaI GTAC 5 cut(s) 68, 588, 954, 1031, 1729
RsaNI GTAC 5 cut(s) 67, 587, 953, 1030, 1728
RseI CAYNNNNRTG 3 cut(s) 868, 1098, 2445
SacI GAGCTC 1 cut(s) 1532
Sau96I GGNCC 7 cut(s) 21, 193, 316, 488, 493, 2484, 2485
SchI GAGTC 5 cut(s) 401, 1132, 1238, 1863, 3006
ScrFI CCNGG 6 cut(s) 329, 1148, 1480, 1940, 2670, 2697
SduI GDGCHC 3 cut(s) 808, 1532, 2488
SexAI ACCWGGT 1 cut(s) 1938
SfcI CTRYAG 4 cut(s) 1764, 2013, 2555, 2989
SfoI GGCGCC 1 cut(s) 262
SfuI TTCGAA 1 cut(s) 2842
SinI GGWCC 3 cut(s) 21, 316, 493
SmiMI CAYNNNNRTG 3 cut(s) 868, 1098, 2445
SmlI CTYRAG 1 cut(s) 1627
SmoI CTYRAG 1 cut(s) 1627
SphI GCATGC 3 cut(s) 1798, 1968, 3110
SspDI GGCGCC 1 cut(s) 260
SspMI CTAG 8 cut(s) 731, 756, 1194, 1877, 2148, 2520, 2801, 2951
SstI GAGCTC 1 cut(s) 1532
StyD4I CCNGG 6 cut(s) 327, 1146, 1478, 1938, 2668, 2695
StyI CCWWGG 5 cut(s) 435, 679, 2213, 2935, 3093
TaaI ACNGT 7 cut(s) 71, 214, 649, 1040, 1910, 2390, 2570
TaiI ACGT 4 cut(s) 42, 113, 588, 3156
TaqI TCGA 8 cut(s) 507, 663, 1126, 1960, 2797, 2842, 2979, 3006
TatI WGTACW 2 cut(s) 1029, 1727
TauI GCSGC 7 cut(s) 107, 137, 198, 266, 979, 1763, 2508
TfiI GAWTC 4 cut(s) 430, 1229, 1915, 3140
TscAI CASTG 8 cut(s) 170, 1084, 1264, 1402, 2329, 2395, 2424, 2466
TseFI GTSAC 4 cut(s) 89, 214, 2201, 2425
Tsp45I GTSAC 4 cut(s) 89, 214, 2201, 2425
TspGWI ACGGA 3 cut(s) 73, 77, 1473
TspRI CASTG 8 cut(s) 170, 1084, 1264, 1402, 2329, 2395, 2424, 2466
VpaK11BI GGWCC 3 cut(s) 21, 316, 493
VspI ATTAAT 4 cut(s) 824, 1299, 1740, 1785
XapI RAATTY 4 cut(s) 1440, 1830, 2700, 3020
XbaI TCTAGA 1 cut(s) 1876
XceI RCATGY 4 cut(s) 1798, 1968, 1989, 3110
XcmI CCANNNNNNNNNTGG 2 cut(s) 1084, 2495
XmiI GTMKAC 1 cut(s) 3162
XmnI GAANNNNTTC 3 cut(s) 446, 1830, 2448
XspI CTAG 8 cut(s) 731, 756, 1194, 1877, 2148, 2520, 2801, 2951
ZraI GACGTC 1 cut(s) 3154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.