FvH4_1g08631

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000612
Physical Location & Seq
Reverse (-)
4584217 .. 4585516
1300 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g08631.t1

Sequence Viewer

Length: 861 bp
ATGGCTTCAAACTCGGTGTCTTCATTTTCTATGACAAGAGAGGAGGTGTGCCTACGTCATGCAATGGACAGAGAGCTCTACACCATTCTGGCGATCCTTCTGTTCCGCGATCCGGTGGAGTCTATGAAGGTTATGGCCTTCTGGCTCTGGCTAGAGAAGTTGGGGTTCCAAAATGTGGTCAAGAGGATGCTGGCTTTACCCCTCATCTTAATCAATGAACTAGCAGATGAGACAGTCACATGCCTCTATGCTATCAATGGTACATTTTTTTCGTACTTGTCCCAAAGCTCTGACCTTCCACTCCTACAAGCCTTCATGGACAAAGGAGTTTCGGTACAATTCTTCTATGAACACCGCCTAGTTGCGGCCAGGGGTATTGCCGATGTAGGCAAGGATGTGTGCGTCAAAGCTTTAAGTGACATTATGGTACATGCCATTGAAAGAAACACTGCTTATAAAAACTCAATAGCAGCAAATCAAAGCCAGGTGAGGCCATCACCTAGCACTATTCGCAAACAGCCACCGCCGGCGAGAAGAAACGAGGTGCCACCAGAGGATCGGACAATGTTTGTCACATTCTCCAAGGGGTACCCTGTTCATGAGTCTGAGGTGATACAGTTCTTTACTAGGGTTTACGGAGATTGCATTGAGTCTTTGAAGATGCAGGAAGTGCAGCCTATTCAGCAAGCACTGTATGCAACAATTGTGTTTTATTCTGCTAATACTGTTGAAGCCATACTCAGTGGTATGAAGAAAGCAAAGTTCACCATAAATGGGAAGCATGTGTGGGTGAGAAAATTTGTGGCAAGACGCACAAGGCCTGCTTCAGTTCCAGCCATGATGTGGCCTCAGAACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

32.54

Weight (kDa)

9.23

Isoelectric Point (pI)

50.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 456
Acc65I GGTACC 1 cut(s) 588
AccB1I GGYRCC 2 cut(s) 544, 588
AccB7I CCANNNNNTGG 2 cut(s) 175, 843
AccII CGCG 1 cut(s) 108
AciI CCGC 4 cut(s) 106, 355, 365, 524
AclWI GGATC 3 cut(s) 88, 104, 564
AcoI YGGCCR 1 cut(s) 366
AcsI RAATTY 1 cut(s) 797
AcuI CTGAAG 1 cut(s) 810
AfaI GTAC 5 cut(s) 262, 275, 336, 429, 590
AfiI CCNNNNNNNGG 5 cut(s) 112, 175, 364, 774, 843
AgsI TTSAA 4 cut(s) 9, 440, 658, 731
AjnI CCWGG 2 cut(s) 368, 483
AluBI AGCT 3 cut(s) 76, 288, 410
AluI AGCT 3 cut(s) 76, 288, 410
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 3 cut(s) 88, 104, 564
AoxI GGCC 5 cut(s) 135, 366, 491, 818, 845
ApeKI GCWGC 2 cut(s) 470, 673
ApoI RAATTY 1 cut(s) 797
ArsI GACNNNNNNTTYG 1 cut(s) 34
Asp718I GGTACC 1 cut(s) 588
AsuHPI GGTGA 5 cut(s) 489, 499, 622, 757, 802
BanI GGYRCC 2 cut(s) 544, 588
BanII GRGCYC 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 2 cut(s) 482, 685
BccI CCATC 1 cut(s) 502
BciT130I CCWGG 2 cut(s) 370, 485
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 5 cut(s) 152, 221, 359, 501, 627
BisI GCNGC 3 cut(s) 366, 471, 674
BlsI GCNGC 3 cut(s) 367, 472, 675
Bme1390I CCNGG 2 cut(s) 370, 485
BmiI GGNNCC 3 cut(s) 167, 546, 590
BmrFI CCNGG 2 cut(s) 370, 485
BmsI GCATC 2 cut(s) 177, 651
BpiI GAAGAC 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 369, 582
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 5 cut(s) 112, 175, 364, 774, 843
Bse118I RCCGGY 1 cut(s) 526
Bse3DI GCAATG 1 cut(s) 69
BseBI CCWGG 2 cut(s) 370, 485
BseDI CCNNGG 2 cut(s) 369, 582
BseGI GGATG 2 cut(s) 192, 400
BseLI CCNNNNNNNGG 5 cut(s) 112, 175, 364, 774, 843
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 2 cut(s) 597, 754
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 2 cut(s) 482, 685
BsgI GTGCAG 1 cut(s) 692
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 5 cut(s) 137, 368, 493, 820, 847
BshNI GGYRCC 2 cut(s) 544, 588
BsiHKAI GWGCWC 1 cut(s) 78
BsiSI CCGG 2 cut(s) 113, 527
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 5 cut(s) 112, 175, 364, 774, 843
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 265
BsnI GGCC 5 cut(s) 137, 368, 493, 820, 847
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 3 cut(s) 93, 109, 556
BspACI CCGC 4 cut(s) 106, 355, 365, 524
BspANI GGCC 5 cut(s) 137, 368, 493, 820, 847
BspCNI CTCAG 2 cut(s) 598, 753
BspFNI CGCG 1 cut(s) 108
BspHI TCATGA 1 cut(s) 598
BspLI GGNNCC 3 cut(s) 167, 546, 590
BspPI GGATC 3 cut(s) 88, 104, 564
BspT107I GGYRCC 2 cut(s) 544, 588
BsrDI GCAATG 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 526
BssAI RCCGGY 1 cut(s) 526
BssECI CCNNGG 2 cut(s) 369, 582
BssMI GATC 3 cut(s) 93, 109, 556
BssT1I CCWWGG 1 cut(s) 582
Bst2UI CCWGG 2 cut(s) 370, 485
Bst4CI ACNGT 4 cut(s) 235, 618, 693, 727
BstAPI GCANNNNNTGC 2 cut(s) 670, 695
BstC8I GCNNGC 4 cut(s) 192, 528, 687, 822
BstDEI CTNAG 3 cut(s) 606, 740, 849
BstF5I GGATG 2 cut(s) 192, 400
BstFNI CGCG 1 cut(s) 108
BstKTI GATC 3 cut(s) 96, 112, 559
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 3 cut(s) 93, 109, 556
BstMWI GCNNNNNNNGC 4 cut(s) 510, 670, 682, 695
BstNI CCWGG 2 cut(s) 370, 485
BstNSI RCATGY 3 cut(s) 243, 434, 785
BstSCI CCNGG 2 cut(s) 368, 483
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 482, 685
BstV2I GAAGAC 1 cut(s) 12
BsuRI GGCC 5 cut(s) 137, 368, 493, 820, 847
BtsCI GGATG 2 cut(s) 192, 400
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 3 cut(s) 447, 689, 748
Cac8I GCNNGC 4 cut(s) 192, 528, 687, 822
CciI TCATGA 1 cut(s) 598
Cfr10I RCCGGY 1 cut(s) 526
CseI GACGC 2 cut(s) 391, 819
Csp6I GTAC 5 cut(s) 261, 274, 335, 428, 589
CviAII CATG 7 cut(s) 59, 240, 316, 431, 599, 782, 838
CviQI GTAC 5 cut(s) 261, 274, 335, 428, 589
DdeI CTNAG 3 cut(s) 606, 740, 849
DpnI GATC 3 cut(s) 95, 111, 558
DpnII GATC 3 cut(s) 93, 109, 556
EaeI YGGCCR 1 cut(s) 366
Ecl136II GAGCTC 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 582
Eco147I AGGCCT 1 cut(s) 820
Eco24I GRGCYC 1 cut(s) 78
Eco53kI GAGCTC 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 810
EcoICRI GAGCTC 1 cut(s) 76
EcoRII CCWGG 2 cut(s) 368, 483
EcoT14I CCWWGG 1 cut(s) 582
EcoT38I GRGCYC 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 582
FaeI CATG 7 cut(s) 62, 243, 319, 434, 602, 785, 841
FalI AAGNNNNNCTT 2 cut(s) 808, 840
FaqI GGGAC 1 cut(s) 265
FatI CATG 7 cut(s) 58, 239, 315, 430, 598, 781, 837
Fnu4HI GCNGC 3 cut(s) 366, 471, 674
FokI GGATG 2 cut(s) 199, 407
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 3 cut(s) 366, 471, 674
FspBI CTAG 5 cut(s) 152, 221, 359, 501, 627
GluI GCNGC 3 cut(s) 366, 471, 674
HaeIII GGCC 5 cut(s) 137, 368, 493, 820, 847
HapII CCGG 2 cut(s) 113, 527
HgaI GACGC 2 cut(s) 391, 819
Hin1II CATG 7 cut(s) 62, 243, 319, 434, 602, 785, 841
HindIII AAGCTT 1 cut(s) 408
HinfI GANTC 3 cut(s) 119, 602, 650
HpaII CCGG 2 cut(s) 113, 527
HphI GGTGA 5 cut(s) 489, 499, 622, 757, 802
Hpy166II GTNNAC 2 cut(s) 634, 765
Hpy188I TCNGA 4 cut(s) 292, 561, 607, 852
Hpy188III TCNNGA 2 cut(s) 181, 599
Hpy8I GTNNAC 2 cut(s) 634, 765
HpyAV CCTTC 5 cut(s) 107, 121, 148, 305, 322
HpyCH4III ACNGT 4 cut(s) 235, 618, 693, 727
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 5 cut(s) 62, 645, 664, 673, 698
HpyF10VI GCNNNNNNNGC 4 cut(s) 510, 670, 682, 695
HpyF3I CTNAG 3 cut(s) 606, 740, 849
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 7 cut(s) 62, 243, 319, 434, 602, 785, 841
KpnI GGTACC 1 cut(s) 592
KroI GCCGGC 1 cut(s) 526
KroNI GCCGGC 1 cut(s) 528
Kzo9I GATC 3 cut(s) 93, 109, 556
Lsp1109I GCAGC 2 cut(s) 482, 685
LweI GCATC 2 cut(s) 177, 651
MaeI CTAG 5 cut(s) 152, 221, 359, 501, 627
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 3 cut(s) 235, 416, 571
MalI GATC 3 cut(s) 95, 111, 558
MboI GATC 3 cut(s) 93, 109, 556
MboII GAAGA 5 cut(s) 12, 334, 546, 670, 763
MfeI CAATTG 1 cut(s) 702
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 3 cut(s) 338, 702, 797
MlyI GAGTC 3 cut(s) 128, 611, 659
MreI CGCCGGCG 1 cut(s) 526
MroNI GCCGGC 1 cut(s) 526
MseI TTAA 2 cut(s) 209, 413
MspI CCGG 2 cut(s) 113, 527
MspR9I CCNGG 2 cut(s) 370, 485
MunI CAATTG 1 cut(s) 702
MvaI CCWGG 2 cut(s) 370, 485
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 4 cut(s) 510, 670, 682, 695
NaeI GCCGGC 1 cut(s) 528
NdeII GATC 3 cut(s) 93, 109, 556
NgoMIV GCCGGC 1 cut(s) 526
NlaIII CATG 7 cut(s) 62, 243, 319, 434, 602, 785, 841
NlaIV GGNNCC 3 cut(s) 167, 546, 590
NmuCI GTSAC 3 cut(s) 235, 416, 571
NspI RCATGY 3 cut(s) 243, 434, 785
PagI TCATGA 1 cut(s) 598
PceI AGGCCT 1 cut(s) 820
PdiI GCCGGC 1 cut(s) 528
PflMI CCANNNNNTGG 2 cut(s) 175, 843
PkrI GCNGC 3 cut(s) 367, 472, 675
PleI GAGTC 3 cut(s) 127, 610, 658
PpsI GAGTC 3 cut(s) 127, 610, 658
PsiI TTATAA 1 cut(s) 456
Psp124BI GAGCTC 1 cut(s) 78
Psp6I CCWGG 2 cut(s) 368, 483
PspGI CCWGG 2 cut(s) 368, 483
PspN4I GGNNCC 3 cut(s) 167, 546, 590
RsaI GTAC 5 cut(s) 262, 275, 336, 429, 590
RsaNI GTAC 5 cut(s) 261, 274, 335, 428, 589
SacI GAGCTC 1 cut(s) 78
SaqAI TTAA 2 cut(s) 209, 413
SatI GCNGC 3 cut(s) 366, 471, 674
Sau3AI GATC 3 cut(s) 93, 109, 556
SchI GAGTC 3 cut(s) 128, 611, 659
ScrFI CCNGG 2 cut(s) 370, 485
SduI GDGCHC 1 cut(s) 78
SfaNI GCATC 2 cut(s) 177, 651
SgrAI CRCCGGYG 1 cut(s) 526
Sse9I AATT 3 cut(s) 338, 702, 797
SseBI AGGCCT 1 cut(s) 820
SsiI CCGC 4 cut(s) 106, 355, 365, 524
SspMI CTAG 5 cut(s) 152, 221, 359, 501, 627
SstI GAGCTC 1 cut(s) 78
StuI AGGCCT 1 cut(s) 820
StyD4I CCNGG 2 cut(s) 368, 483
StyI CCWWGG 1 cut(s) 582
TaaI ACNGT 4 cut(s) 235, 618, 693, 727
TaiI ACGT 1 cut(s) 58
TasI AATT 3 cut(s) 338, 702, 797
TauI GCSGC 1 cut(s) 368
Tru1I TTAA 2 cut(s) 209, 413
Tru9I TTAA 2 cut(s) 209, 413
TscAI CASTG 3 cut(s) 454, 696, 748
TseFI GTSAC 3 cut(s) 235, 416, 571
TseI GCWGC 2 cut(s) 470, 673
Tsp45I GTSAC 3 cut(s) 235, 416, 571
TspDTI ATGAA 7 cut(s) 12, 140, 231, 304, 363, 587, 764
TspGWI ACGGA 1 cut(s) 651
TspRI CASTG 3 cut(s) 454, 696, 748
Van91I CCANNNNNTGG 2 cut(s) 175, 843
XapI RAATTY 1 cut(s) 797
XceI RCATGY 3 cut(s) 243, 434, 785
XcmI CCANNNNNNNNNTGG 1 cut(s) 840
XspI CTAG 5 cut(s) 152, 221, 359, 501, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.