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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 781 |
| AccI | GTMKAC | 1 cut(s) | 186 |
| AccIII | TCCGGA | 1 cut(s) | 196 |
| AciI | CCGC | 2 cut(s) | 763, 923 |
| AclWI | GGATC | 1 cut(s) | 276 |
| AcoI | YGGCCR | 1 cut(s) | 639 |
| AcsI | RAATTY | 3 cut(s) | 464, 940, 1052 |
| AcvI | CACGTG | 1 cut(s) | 371 |
| AfaI | GTAC | 2 cut(s) | 12, 241 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 196, 316, 856, 1018, 1275 |
| AflIII | ACRYGT | 1 cut(s) | 370 |
| AgsI | TTSAA | 2 cut(s) | 664, 872 |
| AhlI | ACTAGT | 1 cut(s) | 1126 |
| AjiI | CACGTC | 1 cut(s) | 518 |
| AjnI | CCWGG | 1 cut(s) | 522 |
| AluBI | AGCT | 3 cut(s) | 628, 818, 865 |
| AluI | AGCT | 3 cut(s) | 628, 818, 865 |
| Alw21I | GWGCWC | 3 cut(s) | 92, 111, 570 |
| Alw26I | GTCTC | 5 cut(s) | 207, 450, 508, 641, 923 |
| Alw44I | GTGCAC | 1 cut(s) | 107 |
| AlwI | GGATC | 1 cut(s) | 276 |
| Ama87I | CYCGRG | 1 cut(s) | 314 |
| Aor13HI | TCCGGA | 1 cut(s) | 196 |
| AoxI | GGCC | 3 cut(s) | 639, 1212, 1277 |
| ApaLI | GTGCAC | 1 cut(s) | 107 |
| ApeKI | GCWGC | 5 cut(s) | 98, 287, 782, 1108, 1234 |
| ApoI | RAATTY | 3 cut(s) | 464, 940, 1052 |
| AseI | ATTAAT | 1 cut(s) | 408 |
| AspA2I | CCTAGG | 1 cut(s) | 1229 |
| AspLEI | GCGC | 1 cut(s) | 782 |
| AspS9I | GGNCC | 1 cut(s) | 1212 |
| AsuC2I | CCSGG | 2 cut(s) | 315, 316 |
| AsuHPI | GGTGA | 4 cut(s) | 607, 730, 1070, 1239 |
| AvaI | CYCGRG | 1 cut(s) | 314 |
| AvrII | CCTAGG | 1 cut(s) | 1229 |
| BaeGI | GKGCMC | 1 cut(s) | 111 |
| BanII | GRGCYC | 1 cut(s) | 147 |
| BbrPI | CACGTG | 1 cut(s) | 371 |
| Bbv12I | GWGCWC | 3 cut(s) | 92, 111, 570 |
| BbvI | GCAGC | 5 cut(s) | 85, 274, 794, 1120, 1221 |
| BccI | CCATC | 4 cut(s) | 299, 794, 1160, 1277 |
| BceAI | ACGGC | 1 cut(s) | 931 |
| BciT130I | CCWGG | 1 cut(s) | 524 |
| BclI | TGATCA | 1 cut(s) | 771 |
| BcnI | CCSGG | 2 cut(s) | 315, 316 |
| BcoDI | GTCTC | 5 cut(s) | 207, 450, 508, 641, 923 |
| BcuI | ACTAGT | 1 cut(s) | 1126 |
| BfaI | CTAG | 6 cut(s) | 140, 449, 879, 1047, 1127, 1230 |
| BfmI | CTRYAG | 2 cut(s) | 183, 258 |
| BisI | GCNGC | 5 cut(s) | 99, 288, 783, 1109, 1235 |
| BlnI | CCTAGG | 1 cut(s) | 1229 |
| BlsI | GCNGC | 5 cut(s) | 100, 289, 784, 1110, 1236 |
| Bme1390I | CCNGG | 3 cut(s) | 315, 316, 524 |
| BmeT110I | CYCGRG | 1 cut(s) | 314 |
| BmgBI | CACGTC | 1 cut(s) | 518 |
| BmgT120I | GGNCC | 1 cut(s) | 1212 |
| BmiI | GGNNCC | 1 cut(s) | 1010 |
| BmrFI | CCNGG | 3 cut(s) | 315, 316, 524 |
| BmrI | ACTGGG | 1 cut(s) | 255 |
| BmsI | GCATC | 4 cut(s) | 19, 891, 1151, 1265 |
| BmuI | ACTGGG | 1 cut(s) | 255 |
| BoxI | GACNNNNGTC | 1 cut(s) | 164 |
| BpmI | CTGGAG | 1 cut(s) | 584 |
| BpuEI | CTTGAG | 3 cut(s) | 728, 832, 1207 |
| BpuMI | CCSGG | 2 cut(s) | 315, 316 |
| BsaAI | YACGTR | 1 cut(s) | 371 |
| BsaBI | GATNNNNATC | 2 cut(s) | 273, 1243 |
| BsaJI | CCNNGG | 6 cut(s) | 314, 315, 376, 636, 855, 1229 |
| BsaWI | WCCGGW | 1 cut(s) | 196 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 196, 316, 856, 1018, 1275 |
| Bse1I | ACTGG | 2 cut(s) | 250, 1154 |
| Bse8I | GATNNNNATC | 2 cut(s) | 273, 1243 |
| BseAI | TCCGGA | 1 cut(s) | 196 |
| BseBI | CCWGG | 1 cut(s) | 524 |
| BseDI | CCNNGG | 6 cut(s) | 314, 315, 376, 636, 855, 1229 |
| BseGI | GGATG | 5 cut(s) | 291, 532, 561, 1142, 1259 |
| BseJI | GATNNNNATC | 2 cut(s) | 273, 1243 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 196, 316, 856, 1018, 1275 |
| BseMII | CTCAG | 2 cut(s) | 503, 615 |
| BseNI | ACTGG | 2 cut(s) | 250, 1154 |
| BseSI | GKGCMC | 1 cut(s) | 111 |
| BseXI | GCAGC | 5 cut(s) | 85, 274, 794, 1120, 1221 |
| BshFI | GGCC | 3 cut(s) | 641, 1214, 1279 |
| BsiHKAI | GWGCWC | 3 cut(s) | 92, 111, 570 |
| BsiHKCI | CYCGRG | 1 cut(s) | 314 |
| BsiSI | CCGG | 2 cut(s) | 197, 315 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 196, 316, 856, 1018, 1275 |
| BsmAI | GTCTC | 5 cut(s) | 207, 450, 508, 641, 923 |
| BsmBI | CGTCTC | 2 cut(s) | 508, 641 |
| BsmI | GAATGC | 1 cut(s) | 129 |
| BsnI | GGCC | 3 cut(s) | 641, 1214, 1279 |
| BsoBI | CYCGRG | 1 cut(s) | 314 |
| Bsp1286I | GDGCHC | 4 cut(s) | 92, 111, 147, 570 |
| Bsp13I | TCCGGA | 1 cut(s) | 196 |
| Bsp1407I | TGTACA | 1 cut(s) | 239 |
| Bsp143I | GATC | 7 cut(s) | 154, 268, 508, 771, 906, 1069, 1238 |
| Bsp19I | CCATGG | 1 cut(s) | 636 |
| BspACI | CCGC | 2 cut(s) | 763, 923 |
| BspANI | GGCC | 3 cut(s) | 641, 1214, 1279 |
| BspCNI | CTCAG | 2 cut(s) | 504, 616 |
| BspEI | TCCGGA | 1 cut(s) | 196 |
| BspLI | GGNNCC | 1 cut(s) | 1010 |
| BspPI | GGATC | 1 cut(s) | 276 |
| BspQI | GCTCTTC | 1 cut(s) | 494 |
| BsrGI | TGTACA | 1 cut(s) | 239 |
| BsrI | ACTGG | 2 cut(s) | 250, 1154 |
| BssECI | CCNNGG | 6 cut(s) | 314, 315, 376, 636, 855, 1229 |
| BssMI | GATC | 7 cut(s) | 154, 268, 508, 771, 906, 1069, 1238 |
| BssT1I | CCWWGG | 4 cut(s) | 376, 636, 855, 1229 |
| Bst2UI | CCWGG | 1 cut(s) | 524 |
| Bst4CI | ACNGT | 4 cut(s) | 45, 184, 262, 652 |
| Bst6I | CTCTTC | 2 cut(s) | 447, 494 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1182 |
| BstAUI | TGTACA | 1 cut(s) | 239 |
| BstBAI | YACGTR | 1 cut(s) | 371 |
| BstC8I | GCNNGC | 1 cut(s) | 1202 |
| BstDEI | CTNAG | 3 cut(s) | 209, 512, 624 |
| BstDSI | CCRYGG | 1 cut(s) | 636 |
| BstF5I | GGATG | 5 cut(s) | 291, 532, 561, 1142, 1259 |
| BstHHI | GCGC | 1 cut(s) | 782 |
| BstKTI | GATC | 7 cut(s) | 157, 271, 511, 774, 909, 1072, 1241 |
| BstMAI | GTCTC | 5 cut(s) | 207, 450, 508, 641, 923 |
| BstMBI | GATC | 7 cut(s) | 154, 268, 508, 771, 906, 1069, 1238 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 38, 1182, 1197, 1234 |
| BstNI | CCWGG | 1 cut(s) | 524 |
| BstNSI | RCATGY | 1 cut(s) | 1084 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 164 |
| BstSCI | CCNGG | 3 cut(s) | 313, 314, 522 |
| BstSFI | CTRYAG | 2 cut(s) | 183, 258 |
| BstSLI | GKGCMC | 1 cut(s) | 111 |
| BstV1I | GCAGC | 5 cut(s) | 85, 274, 794, 1120, 1221 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 298 |
| BsuRI | GGCC | 3 cut(s) | 641, 1214, 1279 |
| BtgI | CCRYGG | 1 cut(s) | 636 |
| BtrI | CACGTC | 1 cut(s) | 518 |
| BtsCI | GGATG | 5 cut(s) | 291, 532, 561, 1142, 1259 |
| BtsIMutI | CAGTG | 4 cut(s) | 41, 621, 1161, 1230 |
| Cac8I | GCNNGC | 1 cut(s) | 1202 |
| CfoI | GCGC | 1 cut(s) | 782 |
| Cfr13I | GGNCC | 1 cut(s) | 1212 |
| Cfr9I | CCCGGG | 1 cut(s) | 314 |
| Csp6I | GTAC | 2 cut(s) | 11, 240 |
| CviAII | CATG | 7 cut(s) | 278, 544, 637, 755, 767, 851, 1081 |
| CviQI | GTAC | 2 cut(s) | 11, 240 |
| DdeI | CTNAG | 3 cut(s) | 209, 512, 624 |
| DpnI | GATC | 7 cut(s) | 156, 270, 510, 773, 908, 1071, 1240 |
| DpnII | GATC | 7 cut(s) | 154, 268, 508, 771, 906, 1069, 1238 |
| EaeI | YGGCCR | 1 cut(s) | 639 |
| Eam1104I | CTCTTC | 2 cut(s) | 447, 494 |
| EarI | CTCTTC | 2 cut(s) | 447, 494 |
| Eco130I | CCWWGG | 4 cut(s) | 376, 636, 855, 1229 |
| Eco24I | GRGCYC | 1 cut(s) | 147 |
| Eco32I | GATATC | 1 cut(s) | 685 |
| Eco72I | CACGTG | 1 cut(s) | 371 |
| Eco88I | CYCGRG | 1 cut(s) | 314 |
| EcoRII | CCWGG | 1 cut(s) | 522 |
| EcoRV | GATATC | 1 cut(s) | 685 |
| EcoT14I | CCWWGG | 4 cut(s) | 376, 636, 855, 1229 |
| EcoT38I | GRGCYC | 1 cut(s) | 147 |
| ErhI | CCWWGG | 4 cut(s) | 376, 636, 855, 1229 |
| Esp3I | CGTCTC | 2 cut(s) | 508, 641 |
| FaeI | CATG | 7 cut(s) | 281, 547, 640, 758, 770, 854, 1084 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1169, 1201 |
| FatI | CATG | 7 cut(s) | 277, 543, 636, 754, 766, 850, 1080 |
| FauI | CCCGC | 1 cut(s) | 916 |
| FbaI | TGATCA | 1 cut(s) | 771 |
| FblI | GTMKAC | 1 cut(s) | 186 |
| Fnu4HI | GCNGC | 5 cut(s) | 99, 288, 783, 1109, 1235 |
| FokI | GGATG | 5 cut(s) | 278, 539, 568, 1129, 1246 |
| FriOI | GRGCYC | 1 cut(s) | 147 |
| Fsp4HI | GCNGC | 5 cut(s) | 99, 288, 783, 1109, 1235 |
| FspBI | CTAG | 6 cut(s) | 140, 449, 879, 1047, 1127, 1230 |
| FspI | TGCGCA | 1 cut(s) | 781 |
| GlaI | GCGC | 1 cut(s) | 781 |
| GluI | GCNGC | 5 cut(s) | 99, 288, 783, 1109, 1235 |
| GsuI | CTGGAG | 1 cut(s) | 584 |
| HaeIII | GGCC | 3 cut(s) | 641, 1214, 1279 |
| HapII | CCGG | 2 cut(s) | 197, 315 |
| HhaI | GCGC | 1 cut(s) | 782 |
| Hin1II | CATG | 7 cut(s) | 281, 547, 640, 758, 770, 854, 1084 |
| Hin6I | GCGC | 1 cut(s) | 780 |
| HinP1I | GCGC | 1 cut(s) | 780 |
| HindIII | AAGCTT | 1 cut(s) | 863 |
| HinfI | GANTC | 6 cut(s) | 250, 530, 610, 982, 1150, 1159 |
| HpaII | CCGG | 2 cut(s) | 197, 315 |
| HphI | GGTGA | 4 cut(s) | 607, 730, 1070, 1239 |
| Hpy166II | GTNNAC | 4 cut(s) | 109, 187, 206, 598 |
| Hpy188I | TCNGA | 5 cut(s) | 159, 513, 535, 1021, 1034 |
| Hpy188III | TCNNGA | 8 cut(s) | 65, 197, 449, 688, 824, 896, 910, 1163 |
| Hpy8I | GTNNAC | 4 cut(s) | 109, 187, 206, 598 |
| Hpy99I | CGWCG | 2 cut(s) | 170, 647 |
| HpyAV | CCTTC | 1 cut(s) | 530 |
| HpyCH4III | ACNGT | 4 cut(s) | 45, 184, 262, 652 |
| HpyCH4IV | ACGT | 3 cut(s) | 202, 370, 517 |
| HpyCH4V | TGCA | 4 cut(s) | 101, 109, 368, 1084 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 38, 1182, 1197, 1234 |
| HpyF3I | CTNAG | 3 cut(s) | 209, 512, 624 |
| HpySE526I | ACGT | 3 cut(s) | 202, 370, 517 |
| Hsp92II | CATG | 7 cut(s) | 281, 547, 640, 758, 770, 854, 1084 |
| HspAI | GCGC | 1 cut(s) | 780 |
| Kpn2I | TCCGGA | 1 cut(s) | 196 |
| Ksp22I | TGATCA | 1 cut(s) | 771 |
| Kzo9I | GATC | 7 cut(s) | 154, 268, 508, 771, 906, 1069, 1238 |
| LguI | GCTCTTC | 1 cut(s) | 494 |
| LmnI | GCTCC | 3 cut(s) | 319, 565, 717 |
| Lsp1109I | GCAGC | 5 cut(s) | 85, 274, 794, 1120, 1221 |
| LweI | GCATC | 4 cut(s) | 19, 891, 1151, 1265 |
| MaeI | CTAG | 6 cut(s) | 140, 449, 879, 1047, 1127, 1230 |
| MaeII | ACGT | 3 cut(s) | 202, 370, 517 |
| MaeIII | GTNAC | 4 cut(s) | 169, 518, 692, 736 |
| MalI | GATC | 7 cut(s) | 156, 270, 510, 773, 908, 1071, 1240 |
| MboI | GATC | 7 cut(s) | 154, 268, 508, 771, 906, 1069, 1238 |
| MboII | GAAGA | 8 cut(s) | 161, 164, 403, 464, 481, 742, 884, 1182 |
| MfeI | CAATTG | 1 cut(s) | 70 |
| MhlI | GDGCHC | 4 cut(s) | 92, 111, 147, 570 |
| MluCI | AATT | 5 cut(s) | 70, 464, 664, 940, 1052 |
| MlyI | GAGTC | 2 cut(s) | 604, 976 |
| MmeI | TCCRAC | 1 cut(s) | 334 |
| MnlI | CCTC | 6 cut(s) | 24, 144, 477, 752, 972, 1122 |
| MroI | TCCGGA | 1 cut(s) | 196 |
| MseI | TTAA | 8 cut(s) | 120, 408, 459, 500, 585, 630, 672, 1092 |
| MslI | CAYNNNNRTG | 3 cut(s) | 276, 296, 701 |
| MspI | CCGG | 2 cut(s) | 197, 315 |
| MspR9I | CCNGG | 3 cut(s) | 315, 316, 524 |
| MunI | CAATTG | 1 cut(s) | 70 |
| Mva1269I | GAATGC | 1 cut(s) | 129 |
| MvaI | CCWGG | 1 cut(s) | 524 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 38, 1182, 1197, 1234 |
| NciI | CCSGG | 2 cut(s) | 315, 316 |
| NcoI | CCATGG | 1 cut(s) | 636 |
| NdeII | GATC | 7 cut(s) | 154, 268, 508, 771, 906, 1069, 1238 |
| NlaIII | CATG | 7 cut(s) | 281, 547, 640, 758, 770, 854, 1084 |
| NlaIV | GGNNCC | 1 cut(s) | 1010 |
| NmuCI | GTSAC | 3 cut(s) | 518, 692, 736 |
| NsbI | TGCGCA | 1 cut(s) | 781 |
| NspI | RCATGY | 1 cut(s) | 1084 |
| PciSI | GCTCTTC | 1 cut(s) | 494 |
| PctI | GAATGC | 1 cut(s) | 129 |
| PfeI | GAWTC | 4 cut(s) | 250, 530, 1150, 1159 |
| PkrI | GCNGC | 5 cut(s) | 100, 289, 784, 1110, 1236 |
| PleI | GAGTC | 2 cut(s) | 604, 976 |
| PmaCI | CACGTG | 1 cut(s) | 371 |
| PmlI | CACGTG | 1 cut(s) | 371 |
| PpsI | GAGTC | 2 cut(s) | 604, 976 |
| Ppu21I | YACGTR | 1 cut(s) | 371 |
| PshAI | GACNNNNGTC | 1 cut(s) | 164 |
| PshBI | ATTAAT | 1 cut(s) | 408 |
| Psp6I | CCWGG | 1 cut(s) | 522 |
| PspCI | CACGTG | 1 cut(s) | 371 |
| PspGI | CCWGG | 1 cut(s) | 522 |
| PspN4I | GGNNCC | 1 cut(s) | 1010 |
| PspPI | GGNCC | 1 cut(s) | 1212 |
| RsaI | GTAC | 2 cut(s) | 12, 241 |
| RsaNI | GTAC | 2 cut(s) | 11, 240 |
| RseI | CAYNNNNRTG | 3 cut(s) | 276, 296, 701 |
| SapI | GCTCTTC | 1 cut(s) | 494 |
| SaqAI | TTAA | 8 cut(s) | 120, 408, 459, 500, 585, 630, 672, 1092 |
| SatI | GCNGC | 5 cut(s) | 99, 288, 783, 1109, 1235 |
| Sau3AI | GATC | 7 cut(s) | 154, 268, 508, 771, 906, 1069, 1238 |
| Sau96I | GGNCC | 1 cut(s) | 1212 |
| SchI | GAGTC | 2 cut(s) | 604, 976 |
| ScrFI | CCNGG | 3 cut(s) | 315, 316, 524 |
| SduI | GDGCHC | 4 cut(s) | 92, 111, 147, 570 |
| SfaNI | GCATC | 4 cut(s) | 19, 891, 1151, 1265 |
| SfcI | CTRYAG | 2 cut(s) | 183, 258 |
| SmaI | CCCGGG | 1 cut(s) | 316 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 276, 296, 701 |
| SmlI | CTYRAG | 3 cut(s) | 743, 811, 1186 |
| SmoI | CTYRAG | 3 cut(s) | 743, 811, 1186 |
| SpeI | ACTAGT | 1 cut(s) | 1126 |
| Sse9I | AATT | 5 cut(s) | 70, 464, 664, 940, 1052 |
| SsiI | CCGC | 2 cut(s) | 763, 923 |
| SspMI | CTAG | 6 cut(s) | 140, 449, 879, 1047, 1127, 1230 |
| StyD4I | CCNGG | 3 cut(s) | 313, 314, 522 |
| StyI | CCWWGG | 4 cut(s) | 376, 636, 855, 1229 |
| TaaI | ACNGT | 4 cut(s) | 45, 184, 262, 652 |
| TaiI | ACGT | 3 cut(s) | 205, 373, 520 |
| TaqI | TCGA | 2 cut(s) | 349, 909 |
| TasI | AATT | 5 cut(s) | 70, 464, 664, 940, 1052 |
| TatI | WGTACW | 1 cut(s) | 239 |
| TfiI | GAWTC | 4 cut(s) | 250, 530, 1150, 1159 |
| Tru1I | TTAA | 8 cut(s) | 120, 408, 459, 500, 585, 630, 672, 1092 |
| Tru9I | TTAA | 8 cut(s) | 120, 408, 459, 500, 585, 630, 672, 1092 |
| TscAI | CASTG | 4 cut(s) | 48, 628, 1161, 1230 |
| TseFI | GTSAC | 3 cut(s) | 518, 692, 736 |
| TseI | GCWGC | 5 cut(s) | 98, 287, 782, 1108, 1234 |
| Tsp45I | GTSAC | 3 cut(s) | 518, 692, 736 |
| TspDTI | ATGAA | 4 cut(s) | 543, 881, 984, 1041 |
| TspGWI | ACGGA | 2 cut(s) | 284, 713 |
| TspMI | CCCGGG | 1 cut(s) | 314 |
| TspRI | CASTG | 4 cut(s) | 48, 628, 1161, 1230 |
| VneI | GTGCAC | 1 cut(s) | 107 |
| VspI | ATTAAT | 1 cut(s) | 408 |
| XapI | RAATTY | 3 cut(s) | 464, 940, 1052 |
| XbaI | TCTAGA | 1 cut(s) | 448 |
| XceI | RCATGY | 1 cut(s) | 1084 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 100 |
| XmaI | CCCGGG | 1 cut(s) | 314 |
| XmaJI | CCTAGG | 1 cut(s) | 1229 |
| XmiI | GTMKAC | 1 cut(s) | 186 |
| XspI | CTAG | 6 cut(s) | 140, 449, 879, 1047, 1127, 1230 |