Rmu_sc0011253.1_g000002

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011253.1
Physical Location & Seq
Reverse (-)
2767 .. 4059
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011253.1_g000002.1.cds

Sequence Viewer

Length: 1293 bp
atggcaatcgtacctcttatgacatacgatgcttcccacgcactgttcccaacaacacttggtcaagacaattggaatacgataatgagcaccaatgctgcattggtgcacaatgctattaactctggcattcctccactagagcccgaagaagatcggactatcgtcgtaacattctctactgtagaccctattccggaacgtgaacttagagacttctttacttggtatatatattgtacaactgggaatcaaactacagttatggatcatcatcatgttattgctgccatccgtatggaaagtgtccaacccggggagcgacctttttgtgcctacattgtgtttcgatatgcttctttggttgcacgtgtccttggtggaaaccagaagatgacattccacattaataggtttattgtttcaggtaggaaatatgagcagtctctagaagagtttaacaaatttcacaacattgataggaggctcttcactcgtttaatctacgatctgagacgtgacctggatgaatcagaaggggtcatggcattgtggatgtcgctggagcacaccagcaaggagtttaacaacttggtgaacaaggcattgactctacccgacactgagcttaatgccatggccgacgagacggtaatagccttgaattacattaagattgatgatatccagagtgacacggaaatgcctacgctccaagccataagtgaaagtcctgtcaccctcaagttcttccatgacaaccgccatgtgatcatttgcgcagccatcaagtttctccaagatgtttgcttgagagcttttcaggacttcccttatcaaccatactaccatgccaaggcgaagcttattgaagaaactagcatcatttttcatcaagagagccagatcgagaataaagaagcgggggagacttgtaggaatttgccgttgagtgataatgagtgtgatgaacaagagaggactcttttcctaacattctctaaagggttccccctttcggaaaatgaagtccgagagtgtttcactagggaatttggtgatattattgatcgtatctacatgcaagaagttaaggaaaagtatcagcagcctctttttgctcaactagtggttcgttcggcatccttgattccagtgattcttgatggaagaagcaaggtgtgcttgagcataaatggcaagcacattagggccaaaaaatcagtgcctaggctgcgatcaaaatcaccagaagcatcatccccaaccatcataaggccgactactgaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

430

Amino Acids

49.45

Weight (kDa)

5.62

Isoelectric Point (pI)

59.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000612)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 781
AccI GTMKAC 1 cut(s) 186
AccIII TCCGGA 1 cut(s) 196
AciI CCGC 2 cut(s) 763, 923
AclWI GGATC 1 cut(s) 276
AcoI YGGCCR 1 cut(s) 639
AcsI RAATTY 3 cut(s) 464, 940, 1052
AcvI CACGTG 1 cut(s) 371
AfaI GTAC 2 cut(s) 12, 241
AfiI CCNNNNNNNGG 5 cut(s) 196, 316, 856, 1018, 1275
AflIII ACRYGT 1 cut(s) 370
AgsI TTSAA 2 cut(s) 664, 872
AhlI ACTAGT 1 cut(s) 1126
AjiI CACGTC 1 cut(s) 518
AjnI CCWGG 1 cut(s) 522
AluBI AGCT 3 cut(s) 628, 818, 865
AluI AGCT 3 cut(s) 628, 818, 865
Alw21I GWGCWC 3 cut(s) 92, 111, 570
Alw26I GTCTC 5 cut(s) 207, 450, 508, 641, 923
Alw44I GTGCAC 1 cut(s) 107
AlwI GGATC 1 cut(s) 276
Ama87I CYCGRG 1 cut(s) 314
Aor13HI TCCGGA 1 cut(s) 196
AoxI GGCC 3 cut(s) 639, 1212, 1277
ApaLI GTGCAC 1 cut(s) 107
ApeKI GCWGC 5 cut(s) 98, 287, 782, 1108, 1234
ApoI RAATTY 3 cut(s) 464, 940, 1052
AseI ATTAAT 1 cut(s) 408
AspA2I CCTAGG 1 cut(s) 1229
AspLEI GCGC 1 cut(s) 782
AspS9I GGNCC 1 cut(s) 1212
AsuC2I CCSGG 2 cut(s) 315, 316
AsuHPI GGTGA 4 cut(s) 607, 730, 1070, 1239
AvaI CYCGRG 1 cut(s) 314
AvrII CCTAGG 1 cut(s) 1229
BaeGI GKGCMC 1 cut(s) 111
BanII GRGCYC 1 cut(s) 147
BbrPI CACGTG 1 cut(s) 371
Bbv12I GWGCWC 3 cut(s) 92, 111, 570
BbvI GCAGC 5 cut(s) 85, 274, 794, 1120, 1221
BccI CCATC 4 cut(s) 299, 794, 1160, 1277
BceAI ACGGC 1 cut(s) 931
BciT130I CCWGG 1 cut(s) 524
BclI TGATCA 1 cut(s) 771
BcnI CCSGG 2 cut(s) 315, 316
BcoDI GTCTC 5 cut(s) 207, 450, 508, 641, 923
BcuI ACTAGT 1 cut(s) 1126
BfaI CTAG 6 cut(s) 140, 449, 879, 1047, 1127, 1230
BfmI CTRYAG 2 cut(s) 183, 258
BisI GCNGC 5 cut(s) 99, 288, 783, 1109, 1235
BlnI CCTAGG 1 cut(s) 1229
BlsI GCNGC 5 cut(s) 100, 289, 784, 1110, 1236
Bme1390I CCNGG 3 cut(s) 315, 316, 524
BmeT110I CYCGRG 1 cut(s) 314
BmgBI CACGTC 1 cut(s) 518
BmgT120I GGNCC 1 cut(s) 1212
BmiI GGNNCC 1 cut(s) 1010
BmrFI CCNGG 3 cut(s) 315, 316, 524
BmrI ACTGGG 1 cut(s) 255
BmsI GCATC 4 cut(s) 19, 891, 1151, 1265
BmuI ACTGGG 1 cut(s) 255
BoxI GACNNNNGTC 1 cut(s) 164
BpmI CTGGAG 1 cut(s) 584
BpuEI CTTGAG 3 cut(s) 728, 832, 1207
BpuMI CCSGG 2 cut(s) 315, 316
BsaAI YACGTR 1 cut(s) 371
BsaBI GATNNNNATC 2 cut(s) 273, 1243
BsaJI CCNNGG 6 cut(s) 314, 315, 376, 636, 855, 1229
BsaWI WCCGGW 1 cut(s) 196
Bsc4I CCNNNNNNNGG 5 cut(s) 196, 316, 856, 1018, 1275
Bse1I ACTGG 2 cut(s) 250, 1154
Bse8I GATNNNNATC 2 cut(s) 273, 1243
BseAI TCCGGA 1 cut(s) 196
BseBI CCWGG 1 cut(s) 524
BseDI CCNNGG 6 cut(s) 314, 315, 376, 636, 855, 1229
BseGI GGATG 5 cut(s) 291, 532, 561, 1142, 1259
BseJI GATNNNNATC 2 cut(s) 273, 1243
BseLI CCNNNNNNNGG 5 cut(s) 196, 316, 856, 1018, 1275
BseMII CTCAG 2 cut(s) 503, 615
BseNI ACTGG 2 cut(s) 250, 1154
BseSI GKGCMC 1 cut(s) 111
BseXI GCAGC 5 cut(s) 85, 274, 794, 1120, 1221
BshFI GGCC 3 cut(s) 641, 1214, 1279
BsiHKAI GWGCWC 3 cut(s) 92, 111, 570
BsiHKCI CYCGRG 1 cut(s) 314
BsiSI CCGG 2 cut(s) 197, 315
BslI CCNNNNNNNGG 5 cut(s) 196, 316, 856, 1018, 1275
BsmAI GTCTC 5 cut(s) 207, 450, 508, 641, 923
BsmBI CGTCTC 2 cut(s) 508, 641
BsmI GAATGC 1 cut(s) 129
BsnI GGCC 3 cut(s) 641, 1214, 1279
BsoBI CYCGRG 1 cut(s) 314
Bsp1286I GDGCHC 4 cut(s) 92, 111, 147, 570
Bsp13I TCCGGA 1 cut(s) 196
Bsp1407I TGTACA 1 cut(s) 239
Bsp143I GATC 7 cut(s) 154, 268, 508, 771, 906, 1069, 1238
Bsp19I CCATGG 1 cut(s) 636
BspACI CCGC 2 cut(s) 763, 923
BspANI GGCC 3 cut(s) 641, 1214, 1279
BspCNI CTCAG 2 cut(s) 504, 616
BspEI TCCGGA 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 1010
BspPI GGATC 1 cut(s) 276
BspQI GCTCTTC 1 cut(s) 494
BsrGI TGTACA 1 cut(s) 239
BsrI ACTGG 2 cut(s) 250, 1154
BssECI CCNNGG 6 cut(s) 314, 315, 376, 636, 855, 1229
BssMI GATC 7 cut(s) 154, 268, 508, 771, 906, 1069, 1238
BssT1I CCWWGG 4 cut(s) 376, 636, 855, 1229
Bst2UI CCWGG 1 cut(s) 524
Bst4CI ACNGT 4 cut(s) 45, 184, 262, 652
Bst6I CTCTTC 2 cut(s) 447, 494
BstAPI GCANNNNNTGC 1 cut(s) 1182
BstAUI TGTACA 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 1202
BstDEI CTNAG 3 cut(s) 209, 512, 624
BstDSI CCRYGG 1 cut(s) 636
BstF5I GGATG 5 cut(s) 291, 532, 561, 1142, 1259
BstHHI GCGC 1 cut(s) 782
BstKTI GATC 7 cut(s) 157, 271, 511, 774, 909, 1072, 1241
BstMAI GTCTC 5 cut(s) 207, 450, 508, 641, 923
BstMBI GATC 7 cut(s) 154, 268, 508, 771, 906, 1069, 1238
BstMWI GCNNNNNNNGC 4 cut(s) 38, 1182, 1197, 1234
BstNI CCWGG 1 cut(s) 524
BstNSI RCATGY 1 cut(s) 1084
BstPAI GACNNNNGTC 1 cut(s) 164
BstSCI CCNGG 3 cut(s) 313, 314, 522
BstSFI CTRYAG 2 cut(s) 183, 258
BstSLI GKGCMC 1 cut(s) 111
BstV1I GCAGC 5 cut(s) 85, 274, 794, 1120, 1221
BstXI CCANNNNNNTGG 1 cut(s) 298
BsuRI GGCC 3 cut(s) 641, 1214, 1279
BtgI CCRYGG 1 cut(s) 636
BtrI CACGTC 1 cut(s) 518
BtsCI GGATG 5 cut(s) 291, 532, 561, 1142, 1259
BtsIMutI CAGTG 4 cut(s) 41, 621, 1161, 1230
Cac8I GCNNGC 1 cut(s) 1202
CfoI GCGC 1 cut(s) 782
Cfr13I GGNCC 1 cut(s) 1212
Cfr9I CCCGGG 1 cut(s) 314
Csp6I GTAC 2 cut(s) 11, 240
CviAII CATG 7 cut(s) 278, 544, 637, 755, 767, 851, 1081
CviQI GTAC 2 cut(s) 11, 240
DdeI CTNAG 3 cut(s) 209, 512, 624
DpnI GATC 7 cut(s) 156, 270, 510, 773, 908, 1071, 1240
DpnII GATC 7 cut(s) 154, 268, 508, 771, 906, 1069, 1238
EaeI YGGCCR 1 cut(s) 639
Eam1104I CTCTTC 2 cut(s) 447, 494
EarI CTCTTC 2 cut(s) 447, 494
Eco130I CCWWGG 4 cut(s) 376, 636, 855, 1229
Eco24I GRGCYC 1 cut(s) 147
Eco32I GATATC 1 cut(s) 685
Eco72I CACGTG 1 cut(s) 371
Eco88I CYCGRG 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 522
EcoRV GATATC 1 cut(s) 685
EcoT14I CCWWGG 4 cut(s) 376, 636, 855, 1229
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 4 cut(s) 376, 636, 855, 1229
Esp3I CGTCTC 2 cut(s) 508, 641
FaeI CATG 7 cut(s) 281, 547, 640, 758, 770, 854, 1084
FalI AAGNNNNNCTT 2 cut(s) 1169, 1201
FatI CATG 7 cut(s) 277, 543, 636, 754, 766, 850, 1080
FauI CCCGC 1 cut(s) 916
FbaI TGATCA 1 cut(s) 771
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 5 cut(s) 99, 288, 783, 1109, 1235
FokI GGATG 5 cut(s) 278, 539, 568, 1129, 1246
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 5 cut(s) 99, 288, 783, 1109, 1235
FspBI CTAG 6 cut(s) 140, 449, 879, 1047, 1127, 1230
FspI TGCGCA 1 cut(s) 781
GlaI GCGC 1 cut(s) 781
GluI GCNGC 5 cut(s) 99, 288, 783, 1109, 1235
GsuI CTGGAG 1 cut(s) 584
HaeIII GGCC 3 cut(s) 641, 1214, 1279
HapII CCGG 2 cut(s) 197, 315
HhaI GCGC 1 cut(s) 782
Hin1II CATG 7 cut(s) 281, 547, 640, 758, 770, 854, 1084
Hin6I GCGC 1 cut(s) 780
HinP1I GCGC 1 cut(s) 780
HindIII AAGCTT 1 cut(s) 863
HinfI GANTC 6 cut(s) 250, 530, 610, 982, 1150, 1159
HpaII CCGG 2 cut(s) 197, 315
HphI GGTGA 4 cut(s) 607, 730, 1070, 1239
Hpy166II GTNNAC 4 cut(s) 109, 187, 206, 598
Hpy188I TCNGA 5 cut(s) 159, 513, 535, 1021, 1034
Hpy188III TCNNGA 8 cut(s) 65, 197, 449, 688, 824, 896, 910, 1163
Hpy8I GTNNAC 4 cut(s) 109, 187, 206, 598
Hpy99I CGWCG 2 cut(s) 170, 647
HpyAV CCTTC 1 cut(s) 530
HpyCH4III ACNGT 4 cut(s) 45, 184, 262, 652
HpyCH4IV ACGT 3 cut(s) 202, 370, 517
HpyCH4V TGCA 4 cut(s) 101, 109, 368, 1084
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 1182, 1197, 1234
HpyF3I CTNAG 3 cut(s) 209, 512, 624
HpySE526I ACGT 3 cut(s) 202, 370, 517
Hsp92II CATG 7 cut(s) 281, 547, 640, 758, 770, 854, 1084
HspAI GCGC 1 cut(s) 780
Kpn2I TCCGGA 1 cut(s) 196
Ksp22I TGATCA 1 cut(s) 771
Kzo9I GATC 7 cut(s) 154, 268, 508, 771, 906, 1069, 1238
LguI GCTCTTC 1 cut(s) 494
LmnI GCTCC 3 cut(s) 319, 565, 717
Lsp1109I GCAGC 5 cut(s) 85, 274, 794, 1120, 1221
LweI GCATC 4 cut(s) 19, 891, 1151, 1265
MaeI CTAG 6 cut(s) 140, 449, 879, 1047, 1127, 1230
MaeII ACGT 3 cut(s) 202, 370, 517
MaeIII GTNAC 4 cut(s) 169, 518, 692, 736
MalI GATC 7 cut(s) 156, 270, 510, 773, 908, 1071, 1240
MboI GATC 7 cut(s) 154, 268, 508, 771, 906, 1069, 1238
MboII GAAGA 8 cut(s) 161, 164, 403, 464, 481, 742, 884, 1182
MfeI CAATTG 1 cut(s) 70
MhlI GDGCHC 4 cut(s) 92, 111, 147, 570
MluCI AATT 5 cut(s) 70, 464, 664, 940, 1052
MlyI GAGTC 2 cut(s) 604, 976
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 6 cut(s) 24, 144, 477, 752, 972, 1122
MroI TCCGGA 1 cut(s) 196
MseI TTAA 8 cut(s) 120, 408, 459, 500, 585, 630, 672, 1092
MslI CAYNNNNRTG 3 cut(s) 276, 296, 701
MspI CCGG 2 cut(s) 197, 315
MspR9I CCNGG 3 cut(s) 315, 316, 524
MunI CAATTG 1 cut(s) 70
Mva1269I GAATGC 1 cut(s) 129
MvaI CCWGG 1 cut(s) 524
MwoI GCNNNNNNNGC 4 cut(s) 38, 1182, 1197, 1234
NciI CCSGG 2 cut(s) 315, 316
NcoI CCATGG 1 cut(s) 636
NdeII GATC 7 cut(s) 154, 268, 508, 771, 906, 1069, 1238
NlaIII CATG 7 cut(s) 281, 547, 640, 758, 770, 854, 1084
NlaIV GGNNCC 1 cut(s) 1010
NmuCI GTSAC 3 cut(s) 518, 692, 736
NsbI TGCGCA 1 cut(s) 781
NspI RCATGY 1 cut(s) 1084
PciSI GCTCTTC 1 cut(s) 494
PctI GAATGC 1 cut(s) 129
PfeI GAWTC 4 cut(s) 250, 530, 1150, 1159
PkrI GCNGC 5 cut(s) 100, 289, 784, 1110, 1236
PleI GAGTC 2 cut(s) 604, 976
PmaCI CACGTG 1 cut(s) 371
PmlI CACGTG 1 cut(s) 371
PpsI GAGTC 2 cut(s) 604, 976
Ppu21I YACGTR 1 cut(s) 371
PshAI GACNNNNGTC 1 cut(s) 164
PshBI ATTAAT 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 522
PspCI CACGTG 1 cut(s) 371
PspGI CCWGG 1 cut(s) 522
PspN4I GGNNCC 1 cut(s) 1010
PspPI GGNCC 1 cut(s) 1212
RsaI GTAC 2 cut(s) 12, 241
RsaNI GTAC 2 cut(s) 11, 240
RseI CAYNNNNRTG 3 cut(s) 276, 296, 701
SapI GCTCTTC 1 cut(s) 494
SaqAI TTAA 8 cut(s) 120, 408, 459, 500, 585, 630, 672, 1092
SatI GCNGC 5 cut(s) 99, 288, 783, 1109, 1235
Sau3AI GATC 7 cut(s) 154, 268, 508, 771, 906, 1069, 1238
Sau96I GGNCC 1 cut(s) 1212
SchI GAGTC 2 cut(s) 604, 976
ScrFI CCNGG 3 cut(s) 315, 316, 524
SduI GDGCHC 4 cut(s) 92, 111, 147, 570
SfaNI GCATC 4 cut(s) 19, 891, 1151, 1265
SfcI CTRYAG 2 cut(s) 183, 258
SmaI CCCGGG 1 cut(s) 316
SmiMI CAYNNNNRTG 3 cut(s) 276, 296, 701
SmlI CTYRAG 3 cut(s) 743, 811, 1186
SmoI CTYRAG 3 cut(s) 743, 811, 1186
SpeI ACTAGT 1 cut(s) 1126
Sse9I AATT 5 cut(s) 70, 464, 664, 940, 1052
SsiI CCGC 2 cut(s) 763, 923
SspMI CTAG 6 cut(s) 140, 449, 879, 1047, 1127, 1230
StyD4I CCNGG 3 cut(s) 313, 314, 522
StyI CCWWGG 4 cut(s) 376, 636, 855, 1229
TaaI ACNGT 4 cut(s) 45, 184, 262, 652
TaiI ACGT 3 cut(s) 205, 373, 520
TaqI TCGA 2 cut(s) 349, 909
TasI AATT 5 cut(s) 70, 464, 664, 940, 1052
TatI WGTACW 1 cut(s) 239
TfiI GAWTC 4 cut(s) 250, 530, 1150, 1159
Tru1I TTAA 8 cut(s) 120, 408, 459, 500, 585, 630, 672, 1092
Tru9I TTAA 8 cut(s) 120, 408, 459, 500, 585, 630, 672, 1092
TscAI CASTG 4 cut(s) 48, 628, 1161, 1230
TseFI GTSAC 3 cut(s) 518, 692, 736
TseI GCWGC 5 cut(s) 98, 287, 782, 1108, 1234
Tsp45I GTSAC 3 cut(s) 518, 692, 736
TspDTI ATGAA 4 cut(s) 543, 881, 984, 1041
TspGWI ACGGA 2 cut(s) 284, 713
TspMI CCCGGG 1 cut(s) 314
TspRI CASTG 4 cut(s) 48, 628, 1161, 1230
VneI GTGCAC 1 cut(s) 107
VspI ATTAAT 1 cut(s) 408
XapI RAATTY 3 cut(s) 464, 940, 1052
XbaI TCTAGA 1 cut(s) 448
XceI RCATGY 1 cut(s) 1084
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XmaI CCCGGG 1 cut(s) 314
XmaJI CCTAGG 1 cut(s) 1229
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 6 cut(s) 140, 449, 879, 1047, 1127, 1230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.