Prupe.2G219300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000612
Physical Location & Seq
Reverse (-)
24821616 .. 24822865
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G219300.1

Sequence Viewer

Length: 1149 bp
ATGGATGCCTCATCTTCCTCCACTTTCTTTACCTCCTCCGGCGTACCCCAAGCCCCCGTCTCAGTCTCCCAAGAAGAGTTCGCCCTTTTTCACAACATTGACCGCAAGCTTTTCTCTCGCCTCATCTTTCCCCTGGGGCGTGACCCGGCTGAGTCTGCCCAGGTCATGGCCCTGTGGATGTGGCTTGAACACGCGGCTAAGGAGTATAACTTTGTGCACAAATTATGTGTCACTTTACCTGACACCCTTCTTAATGGCATTGCAGATGAGTCTGTCGTGGCCTTGAACTGCATTCAACAAGACGATTTCCATGTCGACATCACCAACCGCAACCAAGACATTCCCTTATTTAATGCCCTAACCAAAAGTTGCGCCACCCTCGAATTCTTCCACCAAAATCGCCTCGGCATCATTCGGGGCATCACCAAGTTGTTCAACGAGGTTTGCATAAGAGCCTTTGACAACTTGTTCCCTAACCCACAACCAAATCGAGCTGAACAAATGATGTTGAATGCCGGCATGTTTCGTCCTTACAATCCATCATTTCACAATGCTACAGTTGCCGCCTATGACATGGTCGGGGTATCAAACATGGGACTTTTTCCAAATCAAAGAATGTATGGTGGGGATGTGAATAATAATCCACCGTCTTTGGGGCCTTATCAGCATATTCATCTCTTGGCCAGGGCTGCGACGAGGGGGGATGCTGCCCTAGACTACCTGCGTGGTGTTTTTGATCCCTATGATCTTGCTGCTCAGCGCCAGATTTTGAATGAGGAGATGGGGGATGTTTTGAGCCGTTTGAATATAAATGATGATCAGCAAGAGGTAGAGGATGTGTCTGCTGATGAAAGGACTATTTTCTTGACATTTTCTAAGGGCTATCCCATTTCTGAAGTTGAAGTCAGAGAGTTCTTTTCTAGGAAATTTGGAGACTTTATTGATGGCGTTTTTATGCAAGAAGTGCCTGCTGAGGAACAACCATTGTATGCCCGTCTTGTGGTTCGTTCTACTTCCTCCATTCCAATTGTTCTTGACGGGAAAAACAAGGCCAAATTCTCCATCAATGGGAAGCATGTTTGGGCAAGGAAATACGTGCGTAAATCAAAATCACCAGGAGAACCAAGTTCACCTGTAACTTCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

383

Amino Acids

42.95

Weight (kDa)

5.53

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 729
AccB7I CCANNNNNTGG 1 cut(s) 166
AccI GTMKAC 1 cut(s) 315
AccII CGCG 1 cut(s) 194
AciI CCGC 4 cut(s) 103, 194, 328, 564
AclWI GGATC 1 cut(s) 731
AcoI YGGCCR 1 cut(s) 681
AcsI RAATTY 3 cut(s) 383, 926, 1055
AcuI CTGAAG 2 cut(s) 915, 1125
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 4 cut(s) 166, 653, 1000, 1068
AgsI TTSAA 8 cut(s) 188, 286, 296, 436, 511, 772, 805, 902
AjnI CCWGG 4 cut(s) 132, 159, 683, 1114
AluBI AGCT 2 cut(s) 109, 494
AluI AGCT 2 cut(s) 109, 494
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 3 cut(s) 64, 70, 927
Alw44I GTGCAC 1 cut(s) 215
AlwI GGATC 1 cut(s) 731
AoxI GGCC 5 cut(s) 168, 279, 656, 681, 1050
ApaLI GTGCAC 1 cut(s) 215
ApeKI GCWGC 3 cut(s) 689, 707, 752
ApoI RAATTY 3 cut(s) 383, 926, 1055
ArsI GACNNNNNNTTYG 2 cut(s) 213, 245
AspLEI GCGC 2 cut(s) 374, 762
AspS9I GGNCC 2 cut(s) 169, 656
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 4 cut(s) 313, 415, 1104, 1122
BaeGI GKGCMC 1 cut(s) 219
BalI TGGCCA 1 cut(s) 683
Bbv12I GWGCWC 1 cut(s) 219
BbvCI CCTCAGC 1 cut(s) 972
BbvI GCAGC 3 cut(s) 676, 694, 739
BccI CCATC 4 cut(s) 547, 775, 938, 1070
BceAI ACGGC 1 cut(s) 783
BciT130I CCWGG 4 cut(s) 134, 161, 685, 1116
BclI TGATCA 1 cut(s) 817
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 3 cut(s) 64, 70, 927
BfaI CTAG 2 cut(s) 713, 921
BfmI CTRYAG 1 cut(s) 555
BfoI RGCGCY 1 cut(s) 763
BfuAI ACCTGC 1 cut(s) 729
BisI GCNGC 5 cut(s) 195, 564, 690, 708, 753
BlpI GCTNAGC 1 cut(s) 756
BlsI GCNGC 5 cut(s) 196, 565, 691, 709, 754
Bme1390I CCNGG 5 cut(s) 134, 146, 161, 685, 1116
BmgT120I GGNCC 2 cut(s) 169, 656
BmiI GGNNCC 1 cut(s) 657
BmrFI CCNGG 5 cut(s) 134, 146, 161, 685, 1116
BmsI GCATC 3 cut(s) 417, 429, 694
Bpu10I CCTNAGC 2 cut(s) 198, 972
Bpu1102I GCTNAGC 1 cut(s) 756
BpuMI CCSGG 1 cut(s) 146
BsaAI YACGTR 1 cut(s) 1096
BsaJI CCNNGG 5 cut(s) 132, 133, 159, 403, 684
Bsc4I CCNNNNNNNGG 4 cut(s) 166, 653, 1000, 1068
Bse118I RCCGGY 1 cut(s) 515
Bse3DI GCAATG 1 cut(s) 258
BseBI CCWGG 4 cut(s) 134, 161, 685, 1116
BseDI CCNNGG 5 cut(s) 132, 133, 159, 403, 684
BseGI GGATG 6 cut(s) 10, 183, 634, 709, 793, 841
BseLI CCNNNNNNNGG 4 cut(s) 166, 653, 1000, 1068
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 4 cut(s) 75, 141, 770, 963
BseRI GAGGAG 2 cut(s) 25, 791
BseSI GKGCMC 1 cut(s) 219
BseXI GCAGC 3 cut(s) 676, 694, 739
Bsh1236I CGCG 1 cut(s) 194
BshFI GGCC 5 cut(s) 170, 281, 658, 683, 1052
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 3 cut(s) 39, 146, 516
BslFI GGGAC 1 cut(s) 609
BslI CCNNNNNNNGG 4 cut(s) 166, 653, 1000, 1068
BsmAI GTCTC 3 cut(s) 64, 70, 927
BsmBI CGTCTC 1 cut(s) 64
BsmFI GGGAC 1 cut(s) 609
BsmI GAATGC 2 cut(s) 291, 517
BsnI GGCC 5 cut(s) 170, 281, 658, 683, 1052
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 3 cut(s) 736, 745, 817
Bsp1720I GCTNAGC 1 cut(s) 756
BspACI CCGC 4 cut(s) 103, 194, 328, 564
BspANI GGCC 5 cut(s) 170, 281, 658, 683, 1052
BspCNI CTCAG 4 cut(s) 74, 142, 769, 964
BspFNI CGCG 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 657
BspMI ACCTGC 1 cut(s) 729
BspPI GGATC 1 cut(s) 731
BsrDI GCAATG 1 cut(s) 258
BsrFI RCCGGY 1 cut(s) 515
BssAI RCCGGY 1 cut(s) 515
BssECI CCNNGG 5 cut(s) 132, 133, 159, 403, 684
BssMI GATC 3 cut(s) 736, 745, 817
Bst2UI CCWGG 4 cut(s) 134, 161, 685, 1116
Bst4CI ACNGT 2 cut(s) 559, 648
Bst6I CTCTTC 1 cut(s) 69
BstAPI GCANNNNNTGC 1 cut(s) 964
BstBAI YACGTR 1 cut(s) 1096
BstC8I GCNNGC 3 cut(s) 107, 517, 969
BstDEI CTNAG 6 cut(s) 61, 150, 198, 756, 876, 972
BstF5I GGATG 6 cut(s) 10, 183, 634, 709, 793, 841
BstFNI CGCG 1 cut(s) 194
BstH2I RGCGCY 1 cut(s) 763
BstHHI GCGC 2 cut(s) 374, 762
BstKTI GATC 3 cut(s) 739, 748, 820
BstMAI GTCTC 3 cut(s) 64, 70, 927
BstMBI GATC 3 cut(s) 736, 745, 817
BstMWI GCNNNNNNNGC 5 cut(s) 155, 560, 664, 689, 964
BstNI CCWGG 4 cut(s) 134, 161, 685, 1116
BstNSI RCATGY 2 cut(s) 523, 1079
BstSCI CCNGG 5 cut(s) 132, 144, 159, 683, 1114
BstSFI CTRYAG 1 cut(s) 555
BstSLI GKGCMC 1 cut(s) 219
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 3 cut(s) 676, 694, 739
BsuRI GGCC 5 cut(s) 170, 281, 658, 683, 1052
BtsCI GGATG 6 cut(s) 10, 183, 634, 709, 793, 841
BveI ACCTGC 1 cut(s) 729
Cac8I GCNNGC 3 cut(s) 107, 517, 969
CfoI GCGC 2 cut(s) 374, 762
Cfr10I RCCGGY 1 cut(s) 515
Cfr13I GGNCC 2 cut(s) 169, 656
Csp6I GTAC 1 cut(s) 44
CspCI CAANNNNNGTGG 2 cut(s) 633, 668
CviAII CATG 6 cut(s) 166, 311, 520, 574, 592, 1076
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 6 cut(s) 61, 150, 198, 756, 876, 972
DpnI GATC 3 cut(s) 738, 747, 819
DpnII GATC 3 cut(s) 736, 745, 817
EaeI YGGCCR 1 cut(s) 681
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco57I CTGAAG 2 cut(s) 915, 1125
EcoO109I RGGNCCY 1 cut(s) 656
EcoRI GAATTC 1 cut(s) 383
EcoRII CCWGG 4 cut(s) 132, 159, 683, 1114
Esp3I CGTCTC 1 cut(s) 64
FaeI CATG 6 cut(s) 169, 314, 523, 577, 595, 1079
FaqI GGGAC 1 cut(s) 609
FatI CATG 6 cut(s) 165, 310, 519, 573, 591, 1075
FbaI TGATCA 1 cut(s) 817
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 5 cut(s) 195, 564, 690, 708, 753
FokI GGATG 6 cut(s) 17, 190, 641, 716, 800, 848
Fsp4HI GCNGC 5 cut(s) 195, 564, 690, 708, 753
FspBI CTAG 2 cut(s) 713, 921
GlaI GCGC 2 cut(s) 373, 761
GluI GCNGC 5 cut(s) 195, 564, 690, 708, 753
HaeII RGCGCY 1 cut(s) 763
HaeIII GGCC 5 cut(s) 170, 281, 658, 683, 1052
HapII CCGG 3 cut(s) 39, 146, 516
HhaI GCGC 2 cut(s) 374, 762
Hin1II CATG 6 cut(s) 169, 314, 523, 577, 595, 1079
Hin6I GCGC 2 cut(s) 372, 760
HinP1I GCGC 2 cut(s) 372, 760
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 2 cut(s) 152, 269
HpaII CCGG 3 cut(s) 39, 146, 516
HphI GGTGA 4 cut(s) 313, 415, 1104, 1122
Hpy166II GTNNAC 3 cut(s) 217, 316, 1130
Hpy188I TCNGA 2 cut(s) 895, 908
Hpy188III TCNNGA 2 cut(s) 865, 1034
Hpy8I GTNNAC 3 cut(s) 217, 316, 1130
Hpy99I CGWCG 1 cut(s) 697
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 2 cut(s) 559, 648
HpyCH4IV ACGT 1 cut(s) 1095
HpyCH4V TGCA 5 cut(s) 217, 263, 291, 447, 958
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 560, 664, 689, 964
HpyF3I CTNAG 6 cut(s) 61, 150, 198, 756, 876, 972
HpySE526I ACGT 1 cut(s) 1095
Hsp92II CATG 6 cut(s) 169, 314, 523, 577, 595, 1079
HspAI GCGC 2 cut(s) 372, 760
KroI GCCGGC 1 cut(s) 515
KroNI GCCGGC 1 cut(s) 517
Ksp22I TGATCA 1 cut(s) 817
Kzo9I GATC 3 cut(s) 736, 745, 817
Lsp1109I GCAGC 3 cut(s) 676, 694, 739
LweI GCATC 3 cut(s) 417, 429, 694
MaeI CTAG 2 cut(s) 713, 921
MaeII ACGT 1 cut(s) 1095
MaeIII GTNAC 3 cut(s) 140, 229, 1135
MalI GATC 3 cut(s) 738, 747, 819
MboI GATC 3 cut(s) 736, 745, 817
MboII GAAGA 3 cut(s) 6, 86, 379
MfeI CAATTG 1 cut(s) 1026
MhlI GDGCHC 1 cut(s) 219
MlsI TGGCCA 1 cut(s) 683
MluCI AATT 5 cut(s) 221, 383, 926, 1026, 1055
MluNI TGGCCA 1 cut(s) 683
MlyI GAGTC 2 cut(s) 161, 278
Mox20I TGGCCA 1 cut(s) 683
MroNI GCCGGC 1 cut(s) 515
MscI TGGCCA 1 cut(s) 683
MseI TTAA 3 cut(s) 252, 351, 1147
Msp20I TGGCCA 1 cut(s) 683
MspI CCGG 3 cut(s) 39, 146, 516
MspR9I CCNGG 5 cut(s) 134, 146, 161, 685, 1116
MunI CAATTG 1 cut(s) 1026
Mva1269I GAATGC 2 cut(s) 291, 517
MvaI CCWGG 4 cut(s) 134, 161, 685, 1116
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 5 cut(s) 155, 560, 664, 689, 964
NaeI GCCGGC 1 cut(s) 517
NciI CCSGG 1 cut(s) 146
NdeII GATC 3 cut(s) 736, 745, 817
NgoMIV GCCGGC 1 cut(s) 515
NlaIII CATG 6 cut(s) 169, 314, 523, 577, 595, 1079
NlaIV GGNNCC 1 cut(s) 657
NmeAIII GCCGAG 1 cut(s) 384
NmuCI GTSAC 2 cut(s) 140, 229
NspI RCATGY 2 cut(s) 523, 1079
PasI CCCWGGG 1 cut(s) 133
PctI GAATGC 2 cut(s) 291, 517
PdiI GCCGGC 1 cut(s) 517
PflFI GACNNNGTC 1 cut(s) 575
PflMI CCANNNNNTGG 1 cut(s) 166
PkrI GCNGC 5 cut(s) 196, 565, 691, 709, 754
PleI GAGTC 2 cut(s) 160, 277
PpsI GAGTC 2 cut(s) 160, 277
Ppu21I YACGTR 1 cut(s) 1096
Psp6I CCWGG 4 cut(s) 132, 159, 683, 1114
PspGI CCWGG 4 cut(s) 132, 159, 683, 1114
PspN4I GGNNCC 1 cut(s) 657
PspPI GGNCC 2 cut(s) 169, 656
PsyI GACNNNGTC 1 cut(s) 575
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SalI GTCGAC 1 cut(s) 314
SaqAI TTAA 3 cut(s) 252, 351, 1147
SatI GCNGC 5 cut(s) 195, 564, 690, 708, 753
Sau3AI GATC 3 cut(s) 736, 745, 817
Sau96I GGNCC 2 cut(s) 169, 656
SchI GAGTC 2 cut(s) 161, 278
ScrFI CCNGG 5 cut(s) 134, 146, 161, 685, 1116
SduI GDGCHC 1 cut(s) 219
SfaNI GCATC 3 cut(s) 417, 429, 694
SfcI CTRYAG 1 cut(s) 555
Sse9I AATT 5 cut(s) 221, 383, 926, 1026, 1055
SsiI CCGC 4 cut(s) 103, 194, 328, 564
SspMI CTAG 2 cut(s) 713, 921
StyD4I CCNGG 5 cut(s) 132, 144, 159, 683, 1114
TaaI ACNGT 2 cut(s) 559, 648
TaiI ACGT 1 cut(s) 1098
TaqI TCGA 3 cut(s) 315, 381, 490
TasI AATT 5 cut(s) 221, 383, 926, 1026, 1055
TauI GCSGC 2 cut(s) 197, 566
Tru1I TTAA 3 cut(s) 252, 351, 1147
Tru9I TTAA 3 cut(s) 252, 351, 1147
TseFI GTSAC 2 cut(s) 140, 229
TseI GCWGC 3 cut(s) 689, 707, 752
Tsp45I GTSAC 2 cut(s) 140, 229
TspDTI ATGAA 2 cut(s) 662, 864
Tth111I GACNNNGTC 1 cut(s) 575
Van91I CCANNNNNTGG 1 cut(s) 166
VneI GTGCAC 1 cut(s) 215
XapI RAATTY 3 cut(s) 383, 926, 1055
XceI RCATGY 2 cut(s) 523, 1079
XmiI GTMKAC 1 cut(s) 315
XspI CTAG 2 cut(s) 713, 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.