Rw5G030080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000612
Physical Location & Seq
Reverse (-)
47425717 .. 47426785
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G030080.1

Sequence Viewer

Length: 984 bp
ATGGCCGACGAGTCATGCATGGTCCTCAATGTCGTTCAAAACGATGAATTTCCGATGGTCTTGGAAGCAGATATCATTCCTCACGATATTCCCATTCTCCAAGGAATGACCAAAAGAGGCGTCACCCTCAGATTCTTCCATAAAAACCGCCTCAGCATCATCCGAGGACTTGCCTTGTTTTTCAATGACGTGTGCTTGAGAGCCTTTGAGGAATTGTACATTACAGCTGCTCACTGCCAAAACAAGACTATAGATCCTATATCCACCGGAATAGGGTTACACCCAGAGCCGCAAAATTATGTAAGGAGGATGGTTCTAATCAATGAGTACTATAATCCATTTCTCATTGGAGCTGCGACTTTTGACACGCCTATGGAAACCATAGAACCTCTTCCTCCGCACCCCATGGATGGGGCTGTTGTTAACAGTAATAGTAGTGTTGATCCACTAATATGGGACCCTCGTGTGGCGGCTAAGGCGGTGTCTGTGGGGTCTGCTCAGTTCCCTTCGGAGAATTTGCACCATGGATTTGTTGATCCCTATGATCTTAGCACTCAGCGCGATTTCTTGAATAATGAAATGGCGGATATGCTTAGTCGTTTGCATTTGCATGACGATGATGGTGACGGTGGTGATATAGGCGGTGGTGTTCGGGGGGATCACGTCGAGGAAGAAGTGTCTGCAGATGATAGGACTATTTTCTTGACATTTTCTAAGGGGTATCCCATTTCTGAAAAGGAAGTGAGAGAGTTCTTTACCAGGAAATATGGGAACTTTTTTGATGCTATCCATATGCAAGAAGTACAAGTAGCGGATCAGCAGCCTTTATATGCCCGCCTTGTGGTTCGTTCCGCTTCTTTTATTCCAGTGGTGCTCGAGGGACAAAGCAAGGCCAAATTTTCTATCAATGGAAAACATGTTTGGGCAAGAAAGTACGTGAAAAAGAATATTATCACGAACAAAGTTCACCAAAGGGTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

327

Amino Acids

36.95

Weight (kDa)

5.61

Isoelectric Point (pI)

33.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 561
AclWI GGATC 5 cut(s) 248, 437, 530, 666, 822
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 47, 514, 896
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 4 cut(s) 218, 329, 804, 935
AfiI CCNNNNNNNGG 5 cut(s) 273, 410, 411, 466, 841
AflIII ACRYGT 2 cut(s) 189, 916
AgsI TTSAA 3 cut(s) 38, 184, 571
AjiI CACGTC 2 cut(s) 190, 664
AjnI CCWGG 1 cut(s) 758
AjuI GAANNNNNNNTTGG 2 cut(s) 904, 936
AluBI AGCT 2 cut(s) 227, 353
AluI AGCT 2 cut(s) 227, 353
Alw21I GWGCWC 1 cut(s) 876
AlwI GGATC 5 cut(s) 248, 437, 530, 666, 822
Ama87I CYCGRG 1 cut(s) 875
AoxI GGCC 2 cut(s) 3, 891
ApeKI GCWGC 3 cut(s) 227, 353, 820
ApoI RAATTY 3 cut(s) 47, 514, 896
ArsI GACNNNNNNTTYG 2 cut(s) 105, 137
Asp700I GAANNNNTTC 1 cut(s) 390
AspLEI GCGC 1 cut(s) 561
AspS9I GGNCC 2 cut(s) 22, 457
AsuHPI GGTGA 4 cut(s) 115, 635, 644, 959
AvaI CYCGRG 1 cut(s) 875
AvaII GGWCC 2 cut(s) 22, 457
BauI CACGAG 1 cut(s) 462
Bbv12I GWGCWC 1 cut(s) 876
BbvCI CCTCAGC 1 cut(s) 152
BbvI GCAGC 3 cut(s) 214, 340, 832
BccI CCATC 4 cut(s) 49, 304, 404, 614
BciT130I CCWGG 1 cut(s) 760
BciVI GTATCC 1 cut(s) 732
BfmI CTRYAG 2 cut(s) 249, 681
BfuI GTATCC 1 cut(s) 732
BisI GCNGC 5 cut(s) 228, 290, 354, 471, 821
BlsI GCNGC 5 cut(s) 229, 291, 355, 472, 822
BmcAI AGTACT 1 cut(s) 329
Bme1390I CCNGG 1 cut(s) 760
Bme18I GGWCC 2 cut(s) 22, 457
BmeT110I CYCGRG 1 cut(s) 875
BmgBI CACGTC 2 cut(s) 190, 664
BmgT120I GGNCC 2 cut(s) 22, 457
BmiI GGNNCC 2 cut(s) 458, 459
BmrFI CCNGG 1 cut(s) 760
BmsI GCATC 2 cut(s) 165, 772
Bpu10I CCTNAGC 2 cut(s) 152, 474
BpuEI CTTGAG 1 cut(s) 217
BsaAI YACGTR 1 cut(s) 937
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 4 cut(s) 100, 163, 405, 523
BsaWI WCCGGW 1 cut(s) 266
Bsc4I CCNNNNNNNGG 5 cut(s) 273, 410, 411, 466, 841
Bse1I ACTGG 1 cut(s) 866
BseBI CCWGG 1 cut(s) 760
BseDI CCNNGG 4 cut(s) 100, 163, 405, 523
BseGI GGATG 3 cut(s) 159, 315, 415
BseLI CCNNNNNNNGG 5 cut(s) 273, 410, 411, 466, 841
BseMII CTCAG 4 cut(s) 142, 166, 512, 569
BseNI ACTGG 1 cut(s) 866
BseXI GCAGC 3 cut(s) 214, 340, 832
Bsh1236I CGCG 1 cut(s) 561
BshFI GGCC 2 cut(s) 5, 893
BsiHKAI GWGCWC 1 cut(s) 876
BsiHKCI CYCGRG 1 cut(s) 875
BsiSI CCGG 1 cut(s) 267
BslFI GGGAC 2 cut(s) 470, 894
BslI CCNNNNNNNGG 5 cut(s) 273, 410, 411, 466, 841
BsmFI GGGAC 2 cut(s) 470, 894
BsnI GGCC 2 cut(s) 5, 893
BsoBI CYCGRG 1 cut(s) 875
Bsp1286I GDGCHC 1 cut(s) 876
Bsp1407I TGTACA 1 cut(s) 216
Bsp143I GATC 6 cut(s) 253, 442, 535, 544, 658, 814
Bsp19I CCATGG 2 cut(s) 405, 523
BspANI GGCC 2 cut(s) 5, 893
BspCNI CTCAG 4 cut(s) 141, 165, 511, 568
BspFNI CGCG 1 cut(s) 561
BspLI GGNNCC 2 cut(s) 458, 459
BspMAI CTGCAG 1 cut(s) 685
BspPI GGATC 5 cut(s) 248, 437, 530, 666, 822
BsrGI TGTACA 1 cut(s) 216
BsrI ACTGG 1 cut(s) 866
BssECI CCNNGG 4 cut(s) 100, 163, 405, 523
BssMI GATC 6 cut(s) 253, 442, 535, 544, 658, 814
BssNI GRCGYC 1 cut(s) 120
BssSI CACGAG 1 cut(s) 462
BssT1I CCWWGG 3 cut(s) 100, 405, 523
Bst2BI CACGAG 1 cut(s) 462
Bst2UI CCWGG 1 cut(s) 760
Bst4CI ACNGT 2 cut(s) 428, 629
Bst6I CTCTTC 1 cut(s) 396
BstACI GRCGYC 1 cut(s) 120
BstAUI TGTACA 1 cut(s) 216
BstBAI YACGTR 1 cut(s) 937
BstC8I GCNNGC 1 cut(s) 835
BstDEI CTNAG 8 cut(s) 128, 152, 474, 498, 548, 555, 593, 714
BstDSI CCRYGG 2 cut(s) 405, 523
BstF5I GGATG 3 cut(s) 159, 315, 415
BstFNI CGCG 1 cut(s) 561
BstHHI GCGC 1 cut(s) 561
BstKTI GATC 6 cut(s) 256, 445, 538, 547, 661, 817
BstMBI GATC 6 cut(s) 253, 442, 535, 544, 658, 814
BstMWI GCNNNNNNNGC 2 cut(s) 476, 558
BstNI CCWGG 1 cut(s) 760
BstNSI RCATGY 1 cut(s) 920
BstSCI CCNGG 1 cut(s) 758
BstSFI CTRYAG 2 cut(s) 249, 681
BstUI CGCG 1 cut(s) 561
BstV1I GCAGC 3 cut(s) 214, 340, 832
BstX2I RGATCY 1 cut(s) 253
BstXI CCANNNNNNTGG 1 cut(s) 453
BstYI RGATCY 1 cut(s) 253
BsuI GTATCC 1 cut(s) 732
BsuRI GGCC 2 cut(s) 5, 893
BtgI CCRYGG 2 cut(s) 405, 523
BtrI CACGTC 2 cut(s) 190, 664
BtsCI GGATG 3 cut(s) 159, 315, 415
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 2 cut(s) 232, 873
Cac8I GCNNGC 1 cut(s) 835
CfoI GCGC 1 cut(s) 561
Cfr13I GGNCC 2 cut(s) 22, 457
CseI GACGC 1 cut(s) 109
Csp6I GTAC 4 cut(s) 217, 328, 803, 934
CviAII CATG 6 cut(s) 15, 19, 406, 524, 611, 917
CviJI RGCY 9 cut(s) 5, 203, 227, 289, 353, 416, 473, 823, 893
CviKI_1 RGCY 9 cut(s) 5, 203, 227, 289, 353, 416, 473, 823, 893
CviQI GTAC 4 cut(s) 217, 328, 803, 934
DdeI CTNAG 8 cut(s) 128, 152, 474, 498, 548, 555, 593, 714
DpnI GATC 6 cut(s) 255, 444, 537, 546, 660, 816
DpnII GATC 6 cut(s) 253, 442, 535, 544, 658, 814
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
EciI GGCGGA 1 cut(s) 599
Eco130I CCWWGG 3 cut(s) 100, 405, 523
Eco32I GATATC 1 cut(s) 73
Eco47I GGWCC 2 cut(s) 22, 457
Eco88I CYCGRG 1 cut(s) 875
EcoO109I RGGNCCY 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 758
EcoRV GATATC 1 cut(s) 73
EcoT14I CCWWGG 3 cut(s) 100, 405, 523
EcoT22I ATGCAT 1 cut(s) 20
ErhI CCWWGG 3 cut(s) 100, 405, 523
FaeI CATG 6 cut(s) 18, 22, 409, 527, 614, 920
FaqI GGGAC 2 cut(s) 470, 894
FatI CATG 6 cut(s) 14, 18, 405, 523, 610, 916
FauI CCCGC 1 cut(s) 842
FauNDI CATATG 1 cut(s) 792
Fnu4HI GCNGC 5 cut(s) 228, 290, 354, 471, 821
FokI GGATG 3 cut(s) 146, 322, 422
Fsp4HI GCNGC 5 cut(s) 228, 290, 354, 471, 821
GlaI GCGC 1 cut(s) 560
GluI GCNGC 5 cut(s) 228, 290, 354, 471, 821
HaeIII GGCC 2 cut(s) 5, 893
HapII CCGG 1 cut(s) 267
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 561
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 6 cut(s) 18, 22, 409, 527, 614, 920
Hin6I GCGC 1 cut(s) 559
HinP1I GCGC 1 cut(s) 559
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 2 cut(s) 11, 132
HpaI GTTAAC 1 cut(s) 424
HpaII CCGG 1 cut(s) 267
HphI GGTGA 4 cut(s) 115, 635, 644, 959
Hpy166II GTNNAC 2 cut(s) 424, 967
Hpy188I TCNGA 5 cut(s) 54, 131, 164, 511, 733
Hpy188III TCNNGA 4 cut(s) 83, 568, 703, 955
Hpy8I GTNNAC 2 cut(s) 424, 967
Hpy99I CGWCG 2 cut(s) 11, 668
HpyAV CCTTC 1 cut(s) 516
HpyCH4III ACNGT 2 cut(s) 428, 629
HpyCH4IV ACGT 3 cut(s) 189, 663, 936
HpyCH4V TGCA 6 cut(s) 18, 520, 604, 610, 683, 796
HpyF10VI GCNNNNNNNGC 2 cut(s) 476, 558
HpyF3I CTNAG 8 cut(s) 128, 152, 474, 498, 548, 555, 593, 714
HpySE526I ACGT 3 cut(s) 189, 663, 936
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 6 cut(s) 18, 22, 409, 527, 614, 920
HspAI GCGC 1 cut(s) 559
KflI GGGWCCC 1 cut(s) 457
KspAI GTTAAC 1 cut(s) 424
Kzo9I GATC 6 cut(s) 253, 442, 535, 544, 658, 814
LmnI GCTCC 1 cut(s) 350
LpnPI CCDG 5 cut(s) 280, 297, 745, 772, 879
Lsp1109I GCAGC 3 cut(s) 214, 340, 832
LweI GCATC 2 cut(s) 165, 772
MaeII ACGT 3 cut(s) 189, 663, 936
MaeIII GTNAC 3 cut(s) 121, 276, 623
MalI GATC 6 cut(s) 255, 444, 537, 546, 660, 816
MboI GATC 6 cut(s) 253, 442, 535, 544, 658, 814
MboII GAAGA 3 cut(s) 127, 383, 683
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 876
MluCI AATT 5 cut(s) 47, 212, 295, 514, 896
MlyI GAGTC 1 cut(s) 20
Mph1103I ATGCAT 1 cut(s) 20
MroXI GAANNNNTTC 1 cut(s) 390
MseI TTAA 1 cut(s) 423
MslI CAYNNNNRTG 4 cut(s) 371, 451, 609, 615
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 1 cut(s) 267
MspR9I CCNGG 1 cut(s) 760
MvaI CCWGG 1 cut(s) 760
MvnI CGCG 1 cut(s) 561
MwoI GCNNNNNNNGC 2 cut(s) 476, 558
NcoI CCATGG 2 cut(s) 405, 523
NdeI CATATG 1 cut(s) 792
NdeII GATC 6 cut(s) 253, 442, 535, 544, 658, 814
NlaIII CATG 6 cut(s) 18, 22, 409, 527, 614, 920
NlaIV GGNNCC 2 cut(s) 458, 459
NmuCI GTSAC 2 cut(s) 121, 623
NsiI ATGCAT 1 cut(s) 20
NspI RCATGY 1 cut(s) 920
PaeR7I CTCGAG 1 cut(s) 875
PciI ACATGT 1 cut(s) 916
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 1 cut(s) 132
PkrI GCNGC 5 cut(s) 229, 291, 355, 472, 822
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
Ppu21I YACGTR 1 cut(s) 937
PpuMI RGGWCCY 1 cut(s) 457
PscI ACATGT 1 cut(s) 916
Psp5II RGGWCCY 1 cut(s) 457
Psp6I CCWGG 1 cut(s) 758
PspGI CCWGG 1 cut(s) 758
PspN4I GGNNCC 2 cut(s) 458, 459
PspPI GGNCC 2 cut(s) 22, 457
PspPPI RGGWCCY 1 cut(s) 457
PspXI VCTCGAGB 1 cut(s) 875
PstI CTGCAG 1 cut(s) 685
PsuI RGATCY 1 cut(s) 253
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 4 cut(s) 218, 329, 804, 935
RsaNI GTAC 4 cut(s) 217, 328, 803, 934
RseI CAYNNNNRTG 4 cut(s) 371, 451, 609, 615
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 5 cut(s) 228, 290, 354, 471, 821
Sau3AI GATC 6 cut(s) 253, 442, 535, 544, 658, 814
Sau96I GGNCC 2 cut(s) 22, 457
ScaI AGTACT 1 cut(s) 329
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 760
SduI GDGCHC 1 cut(s) 876
SetI ASST 6 cut(s) 192, 229, 355, 391, 666, 939
SfaNI GCATC 2 cut(s) 165, 772
SfcI CTRYAG 2 cut(s) 249, 681
Sfr274I CTCGAG 1 cut(s) 875
SinI GGWCC 2 cut(s) 22, 457
SlaI CTCGAG 1 cut(s) 875
SmiMI CAYNNNNRTG 4 cut(s) 371, 451, 609, 615
SmlI CTYRAG 2 cut(s) 196, 875
SmoI CTYRAG 2 cut(s) 196, 875
Sse9I AATT 5 cut(s) 47, 212, 295, 514, 896
SspI AATATT 1 cut(s) 949
StyD4I CCNGG 1 cut(s) 758
StyI CCWWGG 3 cut(s) 100, 405, 523
TaaI ACNGT 2 cut(s) 428, 629
TaiI ACGT 3 cut(s) 192, 666, 939
TaqI TCGA 2 cut(s) 666, 876
TasI AATT 5 cut(s) 47, 212, 295, 514, 896
TatI WGTACW 3 cut(s) 216, 327, 802
TauI GCSGC 2 cut(s) 292, 473
TfiI GAWTC 1 cut(s) 132
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 2 cut(s) 239, 873
TseFI GTSAC 2 cut(s) 121, 623
TseI GCWGC 3 cut(s) 227, 353, 820
Tsp45I GTSAC 2 cut(s) 121, 623
TspDTI ATGAA 2 cut(s) 60, 591
TspRI CASTG 2 cut(s) 239, 873
VpaK11BI GGWCC 2 cut(s) 22, 457
XapI RAATTY 3 cut(s) 47, 514, 896
XceI RCATGY 1 cut(s) 920
XhoI CTCGAG 1 cut(s) 875
XmnI GAANNNNTTC 1 cut(s) 390
ZrmI AGTACT 1 cut(s) 329
Zsp2I ATGCAT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.