AT1G49290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000612
Physical Location & Seq
Reverse (-)
18232407 .. 18233680
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G49290.1

Sequence Viewer

Length: 1017 bp
ATGGCTTCTCCTTTGTATCCGTCTGTCTTAAACAATCCTTTATCTTCAATTGTGGTGACACGAGACGAGTTCAATGCTTTTCACACAATCGACAGAACCTTGTTCAGTCGTCTTGTCTTCAATCTAAACCGAGACGTTGACCAGTCGTTTCTAGCCATGTGTTTTCTCTTGTTCCTCGAGCAATCCAGTTATGCCCGCGACATAATCGCGTACCTTGTCTCGTTACCAAACGCTTTTGTCGACGCGGTGGCTAACGAAATCGGTGTGTGTATAAATTTGTTATACAACGTAGAGTTTGCATCAACGTTCTTCGCTGCTGACAACGATGATAACTCCATGATACCATTGCTCTTACGTATTACTGGAGGAAAGTTTACTCTCAGATTGATCAACCAACAACGCAAAAACTTTTGCGCTGGAGTGACAAAGAGTTGGACCGATGTTTGCACTCGAGCATTCTCAGATTTATGCGAGACAGCTCATAGGATCAACAGGGAGAAACAATTGGCTTTAGAGAGAGAGAAATTCATAGAGGATATGAAGAAACTCAGGTTGAGTCTCCAACAAGAAAAATCTAATAGGTTAAGTGTACAACAAGTAAAAATTGCTTCTCCTCCTCCTCCTCGTCCTCATCCTCCAGTTGAAGACGAAACAGAAAAGGCCCTTAGAGAGAAAGAGACAATGGAGGTAAAAGAGAAGGAAGGTGTGCTGGCGGCAGATGATCGGACGGTTTTCCTGACGTTTTCAAAAGGGTATCCGATCTCGGAAGCGGAAGTAAGGGTTTACTTCACTAGGAGATTCGGGGAAGTGATAGAAGCGGTAGAGATGCAAGAAGTTGAAGCAAACGAGCAGCCATTGTTTGCGAAGATGGTGATGAAACTGCAGTGTGCGTCGATGATGGATGAGATTGTGAGTGCGAGGTTTAGAAACAAGTTCACCATCGATGGCAAACATGTTTGGGCTCGTAAGTACGTTCGCAAGAATCCTTATCCAGCTTCATCCTCTACTCATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

338

Amino Acids

38.78

Weight (kDa)

6.97

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 240
AccII CGCG 3 cut(s) 198, 209, 245
AciI CCGC 5 cut(s) 196, 245, 713, 770, 818
AclI AACGTT 1 cut(s) 305
AclWI GGATC 1 cut(s) 494
AcsI RAATTY 2 cut(s) 274, 524
AfaI GTAC 3 cut(s) 212, 591, 971
AflIII ACRYGT 1 cut(s) 952
AgsI TTSAA 6 cut(s) 48, 73, 121, 644, 747, 839
AluBI AGCT 2 cut(s) 479, 995
AluI AGCT 2 cut(s) 479, 995
Alw26I GTCTC 6 cut(s) 57, 126, 223, 467, 563, 671
AlwI GGATC 1 cut(s) 494
Ama87I CYCGRG 2 cut(s) 176, 450
AoxI GGCC 1 cut(s) 660
ApeKI GCWGC 2 cut(s) 314, 850
ApoI RAATTY 2 cut(s) 274, 524
AspLEI GCGC 1 cut(s) 416
AspS9I GGNCC 2 cut(s) 435, 661
AsuHPI GGTGA 3 cut(s) 67, 883, 928
AvaI CYCGRG 2 cut(s) 176, 450
AvaII GGWCC 1 cut(s) 435
BanII GRGCYC 1 cut(s) 964
BauI CACGAG 1 cut(s) 60
BbsI GAAGAC 2 cut(s) 109, 651
BbvI GCAGC 2 cut(s) 301, 862
BccI CCATC 4 cut(s) 862, 892, 938, 947
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BciVI GTATCC 2 cut(s) 27, 765
BclI TGATCA 1 cut(s) 387
BcoDI GTCTC 6 cut(s) 57, 126, 223, 467, 563, 671
BfaI CTAG 2 cut(s) 152, 792
BfmI CTRYAG 1 cut(s) 881
BfuI GTATCC 2 cut(s) 27, 765
BisI GCNGC 3 cut(s) 315, 714, 851
BlsI GCNGC 3 cut(s) 316, 715, 852
Bme18I GGWCC 1 cut(s) 435
BmeT110I CYCGRG 2 cut(s) 176, 450
BmgT120I GGNCC 2 cut(s) 435, 661
BmsI GCATC 2 cut(s) 308, 816
BpiI GAAGAC 2 cut(s) 109, 651
BpmI CTGGAG 3 cut(s) 384, 438, 621
Bsa29I ATCGAT 1 cut(s) 942
BsaAI YACGTR 1 cut(s) 356
Bse1I ACTGG 4 cut(s) 142, 186, 367, 638
Bse3DI GCAATG 1 cut(s) 344
BseCI ATCGAT 1 cut(s) 942
BseGI GGATG 3 cut(s) 631, 907, 998
BseMI GCAATG 1 cut(s) 344
BseMII CTCAG 3 cut(s) 394, 474, 562
BseNI ACTGG 4 cut(s) 142, 186, 367, 638
BseRI GAGGAG 4 cut(s) 603, 606, 609, 612
BseXI GCAGC 2 cut(s) 301, 862
Bsh1236I CGCG 3 cut(s) 198, 209, 245
BshFI GGCC 1 cut(s) 662
BshVI ATCGAT 1 cut(s) 942
BsiHKCI CYCGRG 2 cut(s) 176, 450
BsmAI GTCTC 6 cut(s) 57, 126, 223, 467, 563, 671
BsmBI CGTCTC 2 cut(s) 57, 126
BsmI GAATGC 1 cut(s) 455
BsnI GGCC 1 cut(s) 662
BsoBI CYCGRG 2 cut(s) 176, 450
Bsp1286I GDGCHC 1 cut(s) 964
Bsp1407I TGTACA 1 cut(s) 589
Bsp143I GATC 4 cut(s) 387, 486, 721, 759
BspACI CCGC 5 cut(s) 196, 245, 713, 770, 818
BspANI GGCC 1 cut(s) 662
BspCNI CTCAG 3 cut(s) 393, 473, 561
BspDI ATCGAT 1 cut(s) 942
BspFNI CGCG 3 cut(s) 198, 209, 245
BspMAI CTGCAG 1 cut(s) 885
BspPI GGATC 1 cut(s) 494
BsrDI GCAATG 1 cut(s) 344
BsrGI TGTACA 1 cut(s) 589
BsrI ACTGG 4 cut(s) 142, 186, 367, 638
BssMI GATC 4 cut(s) 387, 486, 721, 759
BssSI CACGAG 1 cut(s) 60
Bst2BI CACGAG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 730
BstAUI TGTACA 1 cut(s) 589
BstBAI YACGTR 1 cut(s) 356
BstC8I GCNNGC 2 cut(s) 196, 711
BstDEI CTNAG 4 cut(s) 380, 460, 548, 665
BstF5I GGATG 3 cut(s) 631, 907, 998
BstFNI CGCG 3 cut(s) 198, 209, 245
BstHHI GCGC 1 cut(s) 416
BstKTI GATC 4 cut(s) 390, 489, 724, 762
BstMAI GTCTC 6 cut(s) 57, 126, 223, 467, 563, 671
BstMBI GATC 4 cut(s) 387, 486, 721, 759
BstNSI RCATGY 1 cut(s) 956
BstSFI CTRYAG 1 cut(s) 881
BstSNI TACGTA 1 cut(s) 356
BstUI CGCG 3 cut(s) 198, 209, 245
BstV1I GCAGC 2 cut(s) 301, 862
BstV2I GAAGAC 2 cut(s) 109, 651
Bsu15I ATCGAT 1 cut(s) 942
BsuI GTATCC 2 cut(s) 27, 765
BsuRI GGCC 1 cut(s) 662
BsuTUI ATCGAT 1 cut(s) 942
BtsCI GGATG 3 cut(s) 631, 907, 998
BtsI GCAGTG 1 cut(s) 890
BtsIMutI CAGTG 1 cut(s) 890
Cac8I GCNNGC 2 cut(s) 196, 711
CfoI GCGC 1 cut(s) 416
Cfr13I GGNCC 2 cut(s) 435, 661
ClaI ATCGAT 1 cut(s) 942
CseI GACGC 2 cut(s) 251, 879
Csp6I GTAC 3 cut(s) 211, 590, 970
CviAII CATG 3 cut(s) 157, 337, 953
CviJI RGCY 9 cut(s) 5, 155, 251, 479, 509, 662, 853, 962, 995
CviKI_1 RGCY 9 cut(s) 5, 155, 251, 479, 509, 662, 853, 962, 995
CviQI GTAC 3 cut(s) 211, 590, 970
DdeI CTNAG 4 cut(s) 380, 460, 548, 665
DpnI GATC 4 cut(s) 389, 488, 723, 761
DpnII GATC 4 cut(s) 387, 486, 721, 759
Eco105I TACGTA 1 cut(s) 356
Eco24I GRGCYC 1 cut(s) 964
Eco47I GGWCC 1 cut(s) 435
Eco88I CYCGRG 2 cut(s) 176, 450
EcoO109I RGGNCCY 1 cut(s) 661
EcoT38I GRGCYC 1 cut(s) 964
Esp3I CGTCTC 2 cut(s) 57, 126
FaeI CATG 3 cut(s) 160, 340, 956
FatI CATG 3 cut(s) 156, 336, 952
FauI CCCGC 1 cut(s) 203
FbaI TGATCA 1 cut(s) 387
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 3 cut(s) 315, 714, 851
FokI GGATG 3 cut(s) 618, 914, 985
FriOI GRGCYC 1 cut(s) 964
Fsp4HI GCNGC 3 cut(s) 315, 714, 851
FspBI CTAG 2 cut(s) 152, 792
GlaI GCGC 1 cut(s) 415
GluI GCNGC 3 cut(s) 315, 714, 851
GsuI CTGGAG 3 cut(s) 384, 438, 621
HaeIII GGCC 1 cut(s) 662
HgaI GACGC 2 cut(s) 251, 879
HhaI GCGC 1 cut(s) 416
Hin1II CATG 3 cut(s) 160, 340, 956
Hin6I GCGC 1 cut(s) 414
HinP1I GCGC 1 cut(s) 414
HincII GTYRAC 2 cut(s) 139, 241
HindII GTYRAC 2 cut(s) 139, 241
HinfI GANTC 3 cut(s) 556, 798, 982
HphI GGTGA 3 cut(s) 67, 883, 928
Hpy166II GTNNAC 6 cut(s) 139, 241, 375, 590, 784, 936
Hpy188I TCNGA 5 cut(s) 383, 463, 726, 759, 766
Hpy188III TCNNGA 1 cut(s) 736
Hpy8I GTNNAC 6 cut(s) 139, 241, 375, 590, 784, 936
Hpy99I CGWCG 2 cut(s) 245, 895
HpyAV CCTTC 2 cut(s) 691, 695
HpyCH4III ACNGT 1 cut(s) 730
HpyCH4IV ACGT 6 cut(s) 135, 288, 305, 355, 740, 972
HpyCH4V TGCA 4 cut(s) 299, 447, 829, 883
HpyF3I CTNAG 4 cut(s) 380, 460, 548, 665
HpySE526I ACGT 6 cut(s) 135, 288, 305, 355, 740, 972
Hsp92II CATG 3 cut(s) 160, 340, 956
HspAI GCGC 1 cut(s) 414
Ksp22I TGATCA 1 cut(s) 387
Kzo9I GATC 4 cut(s) 387, 486, 721, 759
Lsp1109I GCAGC 2 cut(s) 301, 862
LweI GCATC 2 cut(s) 308, 816
MaeI CTAG 2 cut(s) 152, 792
MaeII ACGT 6 cut(s) 135, 288, 305, 355, 740, 972
MaeIII GTNAC 3 cut(s) 55, 222, 421
MalI GATC 4 cut(s) 389, 488, 723, 761
MboI GATC 4 cut(s) 387, 486, 721, 759
MboII GAAGA 6 cut(s) 36, 109, 301, 553, 656, 877
MfeI CAATTG 2 cut(s) 48, 503
MhlI GDGCHC 1 cut(s) 964
MluCI AATT 5 cut(s) 48, 274, 503, 524, 603
MlyI GAGTC 1 cut(s) 565
MmeI TCCRAC 2 cut(s) 413, 586
MseI TTAA 2 cut(s) 29, 584
MunI CAATTG 2 cut(s) 48, 503
Mva1269I GAATGC 1 cut(s) 455
MvnI CGCG 3 cut(s) 198, 209, 245
NdeII GATC 4 cut(s) 387, 486, 721, 759
NlaIII CATG 3 cut(s) 160, 340, 956
NmuCI GTSAC 2 cut(s) 55, 421
NspI RCATGY 1 cut(s) 956
PaeR7I CTCGAG 2 cut(s) 176, 450
PciI ACATGT 1 cut(s) 952
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PctI GAATGC 1 cut(s) 455
PfeI GAWTC 2 cut(s) 798, 982
PkrI GCNGC 3 cut(s) 316, 715, 852
PleI GAGTC 1 cut(s) 564
PpsI GAGTC 1 cut(s) 564
Ppu21I YACGTR 1 cut(s) 356
PscI ACATGT 1 cut(s) 952
Psp1406I AACGTT 1 cut(s) 305
PspPI GGNCC 2 cut(s) 435, 661
PspXI VCTCGAGB 2 cut(s) 176, 450
PstI CTGCAG 1 cut(s) 885
RsaI GTAC 3 cut(s) 212, 591, 971
RsaNI GTAC 3 cut(s) 211, 590, 970
SalI GTCGAC 1 cut(s) 239
SaqAI TTAA 2 cut(s) 29, 584
SatI GCNGC 3 cut(s) 315, 714, 851
Sau3AI GATC 4 cut(s) 387, 486, 721, 759
Sau96I GGNCC 2 cut(s) 435, 661
SchI GAGTC 1 cut(s) 565
SduI GDGCHC 1 cut(s) 964
SfaNI GCATC 2 cut(s) 308, 816
SfcI CTRYAG 1 cut(s) 881
Sfr274I CTCGAG 2 cut(s) 176, 450
SinI GGWCC 1 cut(s) 435
SlaI CTCGAG 2 cut(s) 176, 450
SmlI CTYRAG 2 cut(s) 176, 450
SmoI CTYRAG 2 cut(s) 176, 450
SnaBI TACGTA 1 cut(s) 356
Sse9I AATT 5 cut(s) 48, 274, 503, 524, 603
SsiI CCGC 5 cut(s) 196, 245, 713, 770, 818
SspMI CTAG 2 cut(s) 152, 792
TaaI ACNGT 1 cut(s) 730
TaiI ACGT 6 cut(s) 138, 291, 308, 358, 743, 975
TaqI TCGA 6 cut(s) 90, 177, 240, 451, 893, 942
TaqII GACCGA 1 cut(s) 452
TasI AATT 5 cut(s) 48, 274, 503, 524, 603
TatI WGTACW 1 cut(s) 589
TauI GCSGC 1 cut(s) 716
TfiI GAWTC 2 cut(s) 798, 982
Tru1I TTAA 2 cut(s) 29, 584
Tru9I TTAA 2 cut(s) 29, 584
TscAI CASTG 1 cut(s) 890
TseFI GTSAC 2 cut(s) 55, 421
TseI GCWGC 2 cut(s) 314, 850
Tsp45I GTSAC 2 cut(s) 55, 421
TspDTI ATGAA 4 cut(s) 517, 554, 890, 987
TspGWI ACGGA 1 cut(s) 9
TspRI CASTG 1 cut(s) 890
VpaK11BI GGWCC 1 cut(s) 435
XapI RAATTY 2 cut(s) 274, 524
XceI RCATGY 1 cut(s) 956
XhoI CTCGAG 2 cut(s) 176, 450
XmiI GTMKAC 1 cut(s) 240
XspI CTAG 2 cut(s) 152, 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.