MD07G1180400.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
25965052 .. 25966344
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1180400.v1.1.491

Sequence Viewer

Length: 1194 bp
ATGACTGCGTCCTCTTCATCCACTTTCTTTACCTCTGCAGGCGAGCCCCAAGCCCCAGTTCCAGTCTCCCAACAAGAGTTCACCTTGTTTCACAAAGTCGACCGTAAGGTCTTCTCCCGCCTTACCTTTGTCCTTGGGCGTGACCCGGGTGAGTCAGCCCAGATCGTGGCCCTGTGGATGTGGCTTGAGCATGCGGGCAAAGAGTACAACTTTGTGCACAAATTATGTTCAAATCTACCTGACACCCTTCTAAGTGCCGTAGCGGAGGAGTCTGTGGTGGCTCTAAACTGCGTACAAAATGACAACTTCTACCCCGACTTCAGTAACCATGATATTCCCCTACTCAACGCTCTAACCAATAGCGACGTCACTCTCAAATATTTCCATCAAAACCGCCTAGGAATCATTCGGGGTGTCACCAAATTGTTGAATGAGGTTTGCATGCGAGCGTTTGATGACTTGCTCCCGAAGCGTCACCCAAACAACGCTCAAGAAATATTACTAAACTCTGCCTTGATTGGAGATCAAAATATTGTGATGCCCCAGTACCATGTTAATCCTTTGCACAATCCTCTAATGCATAATGATGTGCCCTATGATGTTGCTAGTGGATCAAACATGAGATCTTTTGTTCCTAATCAAAGAATGCATGGGGTTGTCAATGATCATCATCAACAATTGATGGGGCCTCAACATATTAATCTCCTCACTCGTGCCGTAATGAGGAGTGACGCCTCTCTAGACTACTTGCGGGGTGTTTTTGATCCTTATGATCTCGCTGTTCAGCGCCATATTTTGAACAATGAAATGAGTGATATGTTGAACAATTTGAGTTTGAATGGCGGCGGTTACCGCGGGGAAGCGGAAGAAGTGTCTGCTGAAGAAAGGACTATTTTCTTGACATTTTCTAAAGGCTATCCCATTTCAGAAAATGAAGTCAAAGAGTACTTCAGTAGGAAATTTGGGGACTTTATCGAATCTGTGTTTATGCAAGAAGTGACGGGTGACGATCAACCCTTGTATGCCCGCCTTGTGGTTCGTTCTGCTTCCTCCATTCCAGTTGTTCTTAATGGAAAAAGTAAAGCCAAATTCTCCATTAATGGCAAACATGTTTGGGCAAGAAAATACGTGCGTAAACCAACACCCGGAGAACCAAGTTCACCAAGGACTGTTGCACCAACTCATCAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

398

Amino Acids

44.68

Weight (kDa)

6.35

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000612)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 107
AatII GACGTC 1 cut(s) 369
AccB7I CCANNNNNTGG 1 cut(s) 166
AccI GTMKAC 1 cut(s) 99
AccII CGCG 1 cut(s) 855
AclWI GGATC 2 cut(s) 619, 758
AcsI RAATTY 2 cut(s) 959, 1088
AcuI CTGAAG 3 cut(s) 304, 900, 934
AcyI GRCGYC 2 cut(s) 366, 732
AfaI GTAC 4 cut(s) 206, 294, 548, 947
AfiI CCNNNNNNNGG 4 cut(s) 166, 723, 1033, 1145
AflIII ACRYGT 1 cut(s) 1108
AgsI TTSAA 5 cut(s) 231, 430, 799, 823, 838
AjuI GAANNNNNNNTTGG 2 cut(s) 42, 74
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 1 cut(s) 70
Alw44I GTGCAC 1 cut(s) 215
AlwI GGATC 2 cut(s) 619, 758
Ama87I CYCGRG 1 cut(s) 145
AoxI GGCC 2 cut(s) 168, 686
ApaLI GTGCAC 1 cut(s) 215
ApoI RAATTY 2 cut(s) 959, 1088
AseI ATTAAT 2 cut(s) 699, 1098
AspA2I CCTAGG 1 cut(s) 397
AspLEI GCGC 1 cut(s) 789
AspS9I GGNCC 2 cut(s) 169, 686
AsuC2I CCSGG 3 cut(s) 146, 147, 1146
AsuHPI GGTGA 6 cut(s) 73, 161, 409, 467, 1016, 1152
AvaI CYCGRG 1 cut(s) 145
AvrII CCTAGG 1 cut(s) 397
BaeGI GKGCMC 2 cut(s) 219, 594
BanII GRGCYC 1 cut(s) 48
BauI CACGAG 1 cut(s) 711
BbsI GAAGAC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 219
BccI CCATC 2 cut(s) 393, 676
BceAI ACGGC 2 cut(s) 242, 701
BclI TGATCA 1 cut(s) 664
BcnI CCSGG 3 cut(s) 146, 147, 1146
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 3 cut(s) 398, 606, 740
BfmI CTRYAG 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 790
BglII AGATCT 1 cut(s) 623
BisI GCNGC 1 cut(s) 844
BlnI CCTAGG 1 cut(s) 397
BlsI GCNGC 1 cut(s) 845
BmcAI AGTACT 1 cut(s) 947
Bme1390I CCNGG 3 cut(s) 146, 147, 1146
BmeT110I CYCGRG 1 cut(s) 145
BmgT120I GGNCC 2 cut(s) 169, 686
BmiI GGNNCC 1 cut(s) 687
BmrFI CCNGG 3 cut(s) 146, 147, 1146
BmrI ACTGGG 2 cut(s) 50, 538
BmsI GCATC 1 cut(s) 528
BmuI ACTGGG 2 cut(s) 50, 538
BpiI GAAGAC 1 cut(s) 103
BpuEI CTTGAG 2 cut(s) 206, 474
BpuMI CCSGG 3 cut(s) 146, 147, 1146
BsaAI YACGTR 1 cut(s) 1129
BsaBI GATNNNNATC 1 cut(s) 669
BsaHI GRCGYC 2 cut(s) 366, 732
BsaJI CCNNGG 5 cut(s) 133, 145, 397, 853, 1163
Bsc4I CCNNNNNNNGG 4 cut(s) 166, 723, 1033, 1145
Bse1I ACTGG 4 cut(s) 56, 62, 544, 1058
Bse8I GATNNNNATC 1 cut(s) 669
BseDI CCNNGG 5 cut(s) 133, 145, 397, 853, 1163
BseGI GGATG 2 cut(s) 17, 183
BseJI GATNNNNATC 1 cut(s) 669
BseLI CCNNNNNNNGG 4 cut(s) 166, 723, 1033, 1145
BseNI ACTGG 4 cut(s) 56, 62, 544, 1058
BseRI GAGGAG 3 cut(s) 281, 695, 739
BseSI GKGCMC 2 cut(s) 219, 594
Bsh1236I CGCG 1 cut(s) 855
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 2 cut(s) 170, 688
BsiEI CGRYCG 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 145
BsiSI CCGG 2 cut(s) 146, 1146
BslFI GGGAC 1 cut(s) 980
BslI CCNNNNNNNGG 4 cut(s) 166, 723, 1033, 1145
BsmAI GTCTC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 980
BsmI GAATGC 1 cut(s) 651
BsnI GGCC 2 cut(s) 170, 688
BsoBI CYCGRG 1 cut(s) 145
Bsp1286I GDGCHC 3 cut(s) 48, 219, 594
Bsp143I GATC 8 cut(s) 162, 523, 611, 623, 664, 763, 772, 1009
BspANI GGCC 2 cut(s) 170, 688
BspFNI CGCG 1 cut(s) 855
BspLI GGNNCC 1 cut(s) 687
BspMAI CTGCAG 1 cut(s) 40
BspPI GGATC 2 cut(s) 619, 758
BsrI ACTGG 4 cut(s) 56, 62, 544, 1058
BssECI CCNNGG 5 cut(s) 133, 145, 397, 853, 1163
BssMI GATC 8 cut(s) 162, 523, 611, 623, 664, 763, 772, 1009
BssNI GRCGYC 2 cut(s) 366, 732
BssSI CACGAG 1 cut(s) 711
BssT1I CCWWGG 3 cut(s) 133, 397, 1163
Bst2BI CACGAG 1 cut(s) 711
Bst4CI ACNGT 2 cut(s) 104, 1171
Bst6I CTCTTC 1 cut(s) 19
BstACI GRCGYC 2 cut(s) 366, 732
BstBAI YACGTR 1 cut(s) 1129
BstC8I GCNNGC 7 cut(s) 40, 44, 192, 196, 443, 447, 1027
BstDEI CTNAG 1 cut(s) 251
BstDSI CCRYGG 1 cut(s) 853
BstEII GGTNACC 1 cut(s) 848
BstF5I GGATG 2 cut(s) 17, 183
BstFNI CGCG 1 cut(s) 855
BstH2I RGCGCY 1 cut(s) 790
BstHHI GCGC 1 cut(s) 789
BstKTI GATC 8 cut(s) 165, 526, 614, 626, 667, 766, 775, 1012
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 8 cut(s) 162, 523, 611, 623, 664, 763, 772, 1009
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 2 cut(s) 469, 852
BstNSI RCATGY 3 cut(s) 194, 445, 1112
BstPI GGTNACC 1 cut(s) 848
BstSCI CCNGG 3 cut(s) 144, 145, 1144
BstSFI CTRYAG 1 cut(s) 36
BstSLI GKGCMC 2 cut(s) 219, 594
BstUI CGCG 1 cut(s) 855
BstV2I GAAGAC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 623
BstYI RGATCY 1 cut(s) 623
BsuRI GGCC 2 cut(s) 170, 688
BtgI CCRYGG 1 cut(s) 853
BtsCI GGATG 2 cut(s) 17, 183
Cac8I GCNNGC 7 cut(s) 40, 44, 192, 196, 443, 447, 1027
CfoI GCGC 1 cut(s) 789
Cfr13I GGNCC 2 cut(s) 169, 686
Cfr42I CCGCGG 1 cut(s) 856
Cfr9I CCCGGG 1 cut(s) 145
CseI GACGC 2 cut(s) 461, 740
Csp6I GTAC 4 cut(s) 205, 293, 547, 946
CviAII CATG 7 cut(s) 191, 329, 442, 551, 619, 650, 1109
CviJI RGCY 9 cut(s) 46, 53, 158, 170, 184, 281, 688, 915, 1085
CviKI_1 RGCY 9 cut(s) 46, 53, 158, 170, 184, 281, 688, 915, 1085
CviQI GTAC 4 cut(s) 205, 293, 547, 946
DdeI CTNAG 1 cut(s) 251
DpnI GATC 8 cut(s) 164, 525, 613, 625, 666, 765, 774, 1011
DpnII GATC 8 cut(s) 162, 523, 611, 623, 664, 763, 772, 1009
DrdI GACNNNNNNGTC 1 cut(s) 107
DseDI GACNNNNNNGTC 1 cut(s) 107
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
Eco130I CCWWGG 3 cut(s) 133, 397, 1163
Eco24I GRGCYC 1 cut(s) 48
Eco57I CTGAAG 3 cut(s) 304, 900, 934
Eco88I CYCGRG 1 cut(s) 145
Eco91I GGTNACC 1 cut(s) 848
EcoO109I RGGNCCY 1 cut(s) 686
EcoO65I GGTNACC 1 cut(s) 848
EcoT14I CCWWGG 3 cut(s) 133, 397, 1163
EcoT22I ATGCAT 2 cut(s) 582, 651
EcoT38I GRGCYC 1 cut(s) 48
ErhI CCWWGG 3 cut(s) 133, 397, 1163
FaeI CATG 7 cut(s) 194, 332, 445, 554, 622, 653, 1112
FaqI GGGAC 1 cut(s) 980
FatI CATG 7 cut(s) 190, 328, 441, 550, 618, 649, 1108
FauI CCCGC 5 cut(s) 125, 187, 744, 848, 1034
FbaI TGATCA 1 cut(s) 664
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 844
FokI GGATG 2 cut(s) 4, 190
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 844
FspBI CTAG 3 cut(s) 398, 606, 740
GlaI GCGC 1 cut(s) 788
GluI GCNGC 1 cut(s) 844
HaeII RGCGCY 1 cut(s) 790
HaeIII GGCC 2 cut(s) 170, 688
HapII CCGG 2 cut(s) 146, 1146
HgaI GACGC 2 cut(s) 461, 740
HhaI GCGC 1 cut(s) 789
Hin1I GRCGYC 2 cut(s) 366, 732
Hin1II CATG 7 cut(s) 194, 332, 445, 554, 622, 653, 1112
Hin6I GCGC 1 cut(s) 787
HinP1I GCGC 1 cut(s) 787
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 4 cut(s) 152, 269, 402, 977
HpaII CCGG 2 cut(s) 146, 1146
HphI GGTGA 6 cut(s) 73, 161, 409, 467, 1016, 1152
Hpy166II GTNNAC 5 cut(s) 81, 100, 217, 1136, 1160
Hpy188I TCNGA 1 cut(s) 928
Hpy188III TCNNGA 4 cut(s) 466, 491, 740, 898
Hpy8I GTNNAC 5 cut(s) 81, 100, 217, 1136, 1160
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 2 cut(s) 104, 1171
HpyCH4IV ACGT 2 cut(s) 366, 1128
HpyCH4V TGCA 8 cut(s) 38, 217, 441, 565, 580, 649, 991, 1175
HpyF10VI GCNNNNNNNGC 2 cut(s) 469, 852
HpyF3I CTNAG 1 cut(s) 251
HpySE526I ACGT 2 cut(s) 366, 1128
Hsp92I GRCGYC 2 cut(s) 366, 732
Hsp92II CATG 7 cut(s) 194, 332, 445, 554, 622, 653, 1112
HspAI GCGC 1 cut(s) 787
Ksp22I TGATCA 1 cut(s) 664
KspI CCGCGG 1 cut(s) 856
Kzo9I GATC 8 cut(s) 162, 523, 611, 623, 664, 763, 772, 1009
LmnI GCTCC 1 cut(s) 468
LweI GCATC 1 cut(s) 528
MaeI CTAG 3 cut(s) 398, 606, 740
MaeII ACGT 2 cut(s) 366, 1128
MaeIII GTNAC 9 cut(s) 140, 323, 367, 415, 473, 728, 848, 997, 1004
MalI GATC 8 cut(s) 164, 525, 613, 625, 666, 765, 774, 1011
MboI GATC 8 cut(s) 162, 523, 611, 623, 664, 763, 772, 1009
MboII GAAGA 4 cut(s) 6, 103, 878, 893
MfeI CAATTG 1 cut(s) 677
MflI RGATCY 1 cut(s) 623
MhlI GDGCHC 3 cut(s) 48, 219, 594
MluCI AATT 6 cut(s) 221, 422, 677, 826, 959, 1088
MlyI GAGTC 2 cut(s) 161, 278
Mph1103I ATGCAT 2 cut(s) 582, 651
MseI TTAA 5 cut(s) 555, 699, 1068, 1098, 1192
MslI CAYNNNNRTG 1 cut(s) 585
MspA1I CMGCKG 1 cut(s) 855
MspI CCGG 2 cut(s) 146, 1146
MspR9I CCNGG 3 cut(s) 146, 147, 1146
MunI CAATTG 1 cut(s) 677
Mva1269I GAATGC 1 cut(s) 651
MvnI CGCG 1 cut(s) 855
MwoI GCNNNNNNNGC 2 cut(s) 469, 852
NciI CCSGG 3 cut(s) 146, 147, 1146
NdeII GATC 8 cut(s) 162, 523, 611, 623, 664, 763, 772, 1009
NlaIII CATG 7 cut(s) 194, 332, 445, 554, 622, 653, 1112
NlaIV GGNNCC 1 cut(s) 687
NmuCI GTSAC 7 cut(s) 140, 367, 415, 473, 728, 997, 1004
NsiI ATGCAT 2 cut(s) 582, 651
NspI RCATGY 3 cut(s) 194, 445, 1112
PaeI GCATGC 2 cut(s) 194, 445
PciI ACATGT 1 cut(s) 1108
PctI GAATGC 1 cut(s) 651
PfeI GAWTC 2 cut(s) 402, 977
PflFI GACNNNGTC 1 cut(s) 7
PflMI CCANNNNNTGG 1 cut(s) 166
PkrI GCNGC 1 cut(s) 845
PleI GAGTC 2 cut(s) 160, 277
PpsI GAGTC 2 cut(s) 160, 277
Ppu21I YACGTR 1 cut(s) 1129
PscI ACATGT 1 cut(s) 1108
PshBI ATTAAT 2 cut(s) 699, 1098
PspEI GGTNACC 1 cut(s) 848
PspN4I GGNNCC 1 cut(s) 687
PspPI GGNCC 2 cut(s) 169, 686
PstI CTGCAG 1 cut(s) 40
PsuI RGATCY 1 cut(s) 623
PsyI GACNNNGTC 1 cut(s) 7
RsaI GTAC 4 cut(s) 206, 294, 548, 947
RsaNI GTAC 4 cut(s) 205, 293, 547, 946
RseI CAYNNNNRTG 1 cut(s) 585
SacII CCGCGG 1 cut(s) 856
SalI GTCGAC 1 cut(s) 98
SaqAI TTAA 5 cut(s) 555, 699, 1068, 1098, 1192
SatI GCNGC 1 cut(s) 844
Sau3AI GATC 8 cut(s) 162, 523, 611, 623, 664, 763, 772, 1009
Sau96I GGNCC 2 cut(s) 169, 686
ScaI AGTACT 1 cut(s) 947
SchI GAGTC 2 cut(s) 161, 278
ScrFI CCNGG 3 cut(s) 146, 147, 1146
SduI GDGCHC 3 cut(s) 48, 219, 594
SetI ASST 8 cut(s) 35, 86, 111, 128, 241, 369, 438, 1131
SfaNI GCATC 1 cut(s) 528
SfcI CTRYAG 1 cut(s) 36
Sfr303I CCGCGG 1 cut(s) 856
SgrBI CCGCGG 1 cut(s) 856
SmaI CCCGGG 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 585
SmlI CTYRAG 2 cut(s) 185, 489
SmoI CTYRAG 2 cut(s) 185, 489
SphI GCATGC 2 cut(s) 194, 445
Sse9I AATT 6 cut(s) 221, 422, 677, 826, 959, 1088
SspI AATATT 3 cut(s) 380, 498, 532
SspMI CTAG 3 cut(s) 398, 606, 740
StyD4I CCNGG 3 cut(s) 144, 145, 1144
StyI CCWWGG 3 cut(s) 133, 397, 1163
TaaI ACNGT 2 cut(s) 104, 1171
TaiI ACGT 2 cut(s) 369, 1131
TaqI TCGA 2 cut(s) 99, 975
TasI AATT 6 cut(s) 221, 422, 677, 826, 959, 1088
TatI WGTACW 2 cut(s) 204, 945
TauI GCSGC 1 cut(s) 846
TfiI GAWTC 2 cut(s) 402, 977
Tru1I TTAA 5 cut(s) 555, 699, 1068, 1098, 1192
Tru9I TTAA 5 cut(s) 555, 699, 1068, 1098, 1192
TseFI GTSAC 7 cut(s) 140, 367, 415, 473, 728, 997, 1004
Tsp45I GTSAC 7 cut(s) 140, 367, 415, 473, 728, 997, 1004
TspDTI ATGAA 3 cut(s) 6, 819, 948
TspMI CCCGGG 1 cut(s) 145
Tth111I GACNNNGTC 1 cut(s) 7
Van91I CCANNNNNTGG 1 cut(s) 166
VneI GTGCAC 1 cut(s) 215
VspI ATTAAT 2 cut(s) 699, 1098
XapI RAATTY 2 cut(s) 959, 1088
XbaI TCTAGA 1 cut(s) 739
XceI RCATGY 3 cut(s) 194, 445, 1112
XmaI CCCGGG 1 cut(s) 145
XmaJI CCTAGG 1 cut(s) 397
XmiI GTMKAC 1 cut(s) 99
XspI CTAG 3 cut(s) 398, 606, 740
ZraI GACGTC 1 cut(s) 367
ZrmI AGTACT 1 cut(s) 947
Zsp2I ATGCAT 2 cut(s) 582, 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.