RLG00000027502

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000612
Physical Location & Seq
Reverse (-)
12237116 .. 12238194
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027502

Sequence Viewer

Length: 969 bp
ATGGCCTTCTTTGCCTATCCCTGTGATGATGCCCCCGTCTCAAAAGAAGAGTTCAGCTTGTTTCACACCATCGACCGCAAGCTCTTCACGCGATTGGTCTTTGGCCTCGGCCGTGACCCCTCCGAGTCGGCCCAAGTCATGGCGCTGTGGATGTGGTTGGAGCACAATGGGAAGGAGTTTAACTTGGTTTACAAGACACTGATGACTCTACCCAACACCCTTCTCAATGCCATGGCCGACGAGTCCGTTTTGGCCTTGAAGTGCATTCAGAGCGATGACTTCCCTCGTCCTAATCTTGACACCACTACTGATATTCCTCTGCTCCAAGCAATTAGCAAAAGTGGTGTCACCCTCAAATTCTTCCATGATAATCGAATAGGGATCATGCGAGGCGTCTCTGCGCTGTTCAAAGACATTTGCTTGAAAGCGTTTCAGGACTTGTTGCTTCATCCTCACCAAGAGAGAAGAGCCGATGCTAATGTGTACAATCCAACAATGGGTGCTATTGCTCCACAGGTTTGGAACCCGATAATCAATGGTGGAAGTCTTCGGAATTTGGGTGGCGGTTTTGATCCTTATGACCTTTCAGTTCAGCGCGAGATTTTGAACAAGGAAATGGAGGAGGTTTTGAGCCATTTGACTTTGAATGACAATGAAGATGATGGCCGTGGTGAAGATCAAGAAGTTGAGCCCCATGAGAGGACTATTTTCTTGACATTTTCTAAAGGGTACCCCATTTCTGAAAATGAAATAAGAGAATCTATCACTAAAAAATTTGGGGATGTTATTGAAGCGATCTATATGCAAGAAGTCCTTTCTCAGCAACCACTGTATGCCCGGCTTGTGGTTCGTTCTGCTTCCTCCATTCCGGTGGTTCTTGAGGGCCAAAACAAGGCCAAATTCACCATTAAAGGCAAGCATGTTTGGGCGAGGAAATATGTGCACAAGACTCAAACAACTTCACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

323

Amino Acids

36.5

Weight (kDa)

5.76

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 729
AccB1I GGYRCC 1 cut(s) 729
AccB7I CCANNNNNTGG 1 cut(s) 139
AccII CGCG 2 cut(s) 91, 597
AciI CCGC 2 cut(s) 76, 564
AclWI GGATC 2 cut(s) 389, 566
AcoI YGGCCR 3 cut(s) 109, 234, 664
AcsI RAATTY 4 cut(s) 356, 553, 773, 899
AcyI GRCGYC 1 cut(s) 393
AfaI GTAC 2 cut(s) 485, 731
AfiI CCNNNNNNNGG 5 cut(s) 139, 497, 699, 844, 892
AgsI TTSAA 6 cut(s) 259, 409, 424, 607, 646, 791
AluBI AGCT 2 cut(s) 57, 82
AluI AGCT 2 cut(s) 57, 82
Alw21I GWGCWC 2 cut(s) 165, 945
Alw26I GTCTC 2 cut(s) 43, 400
Alw44I GTGCAC 1 cut(s) 941
AlwI GGATC 2 cut(s) 389, 566
AoxI GGCC 9 cut(s) 3, 103, 109, 129, 234, 252, 664, 883, 894
ApaLI GTGCAC 1 cut(s) 941
ApoI RAATTY 4 cut(s) 356, 553, 773, 899
ArsI GACNNNNNNTTYG 2 cut(s) 330, 362
Asp718I GGTACC 1 cut(s) 729
AspLEI GCGC 3 cut(s) 145, 403, 597
AspS9I GGNCC 2 cut(s) 130, 883
AsuC2I CCSGG 1 cut(s) 838
AsuHPI GGTGA 5 cut(s) 340, 446, 683, 895, 954
BaeGI GKGCMC 1 cut(s) 945
BanI GGYRCC 1 cut(s) 729
BanII GRGCYC 1 cut(s) 693
BbsI GAAGAC 1 cut(s) 539
Bbv12I GWGCWC 2 cut(s) 165, 945
BccI CCATC 2 cut(s) 77, 656
BceAI ACGGC 2 cut(s) 96, 651
BcgI CGANNNNNNTGC 2 cut(s) 784, 818
BcnI CCSGG 1 cut(s) 838
BcoDI GTCTC 2 cut(s) 43, 400
BfoI RGCGCY 1 cut(s) 146
Bme1390I CCNGG 1 cut(s) 838
BmgT120I GGNCC 2 cut(s) 130, 883
BmiI GGNNCC 2 cut(s) 524, 731
BmrFI CCNGG 1 cut(s) 838
BmsI GCATC 2 cut(s) 19, 463
BpiI GAAGAC 1 cut(s) 539
BpuEI CTTGAG 1 cut(s) 899
BpuMI CCSGG 1 cut(s) 838
BsaHI GRCGYC 1 cut(s) 393
BsaJI CCNNGG 3 cut(s) 106, 231, 667
BsaWI WCCGGW 1 cut(s) 868
Bsc4I CCNNNNNNNGG 5 cut(s) 139, 497, 699, 844, 892
BseDI CCNNGG 3 cut(s) 106, 231, 667
BseGI GGATG 3 cut(s) 156, 448, 787
BseLI CCNNNNNNNGG 5 cut(s) 139, 497, 699, 844, 892
BseMII CTCAG 1 cut(s) 833
BseRI GAGGAG 1 cut(s) 635
BseSI GKGCMC 1 cut(s) 945
BseX3I CGGCCG 1 cut(s) 109
Bsh1236I CGCG 2 cut(s) 91, 597
Bsh1285I CGRYCG 2 cut(s) 76, 112
BshFI GGCC 9 cut(s) 5, 105, 111, 131, 236, 254, 666, 885, 896
BshNI GGYRCC 1 cut(s) 729
BsiEI CGRYCG 2 cut(s) 76, 112
BsiHKAI GWGCWC 2 cut(s) 165, 945
BsiSI CCGG 2 cut(s) 838, 869
BslI CCNNNNNNNGG 5 cut(s) 139, 497, 699, 844, 892
BsmAI GTCTC 2 cut(s) 43, 400
BsmBI CGTCTC 2 cut(s) 43, 400
BsmI GAATGC 1 cut(s) 264
BsnI GGCC 9 cut(s) 5, 105, 111, 131, 236, 254, 666, 885, 896
Bsp1286I GDGCHC 3 cut(s) 165, 693, 945
Bsp1407I TGTACA 1 cut(s) 483
Bsp143I GATC 4 cut(s) 381, 571, 676, 795
Bsp19I CCATGG 1 cut(s) 231
BspACI CCGC 2 cut(s) 76, 564
BspANI GGCC 9 cut(s) 5, 105, 111, 131, 236, 254, 666, 885, 896
BspCNI CTCAG 1 cut(s) 832
BspFNI CGCG 2 cut(s) 91, 597
BspLI GGNNCC 2 cut(s) 524, 731
BspPI GGATC 2 cut(s) 389, 566
BspQI GCTCTTC 2 cut(s) 89, 460
BspT107I GGYRCC 1 cut(s) 729
BsrGI TGTACA 1 cut(s) 483
BssECI CCNNGG 3 cut(s) 106, 231, 667
BssMI GATC 4 cut(s) 381, 571, 676, 795
BssNI GRCGYC 1 cut(s) 393
BssT1I CCWWGG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 831
Bst6I CTCTTC 3 cut(s) 42, 89, 460
BstACI GRCGYC 1 cut(s) 393
BstAUI TGTACA 1 cut(s) 483
BstC8I GCNNGC 2 cut(s) 80, 917
BstDEI CTNAG 1 cut(s) 819
BstDSI CCRYGG 2 cut(s) 231, 667
BstF5I GGATG 3 cut(s) 156, 448, 787
BstFNI CGCG 2 cut(s) 91, 597
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 3 cut(s) 145, 403, 597
BstKTI GATC 4 cut(s) 384, 574, 679, 798
BstMAI GTCTC 2 cut(s) 43, 400
BstMBI GATC 4 cut(s) 381, 571, 676, 795
BstMCI CGRYCG 2 cut(s) 76, 112
BstMWI GCNNNNNNNGC 3 cut(s) 11, 88, 270
BstNSI RCATGY 1 cut(s) 923
BstSCI CCNGG 1 cut(s) 836
BstSLI GKGCMC 1 cut(s) 945
BstUI CGCG 2 cut(s) 91, 597
BstV2I GAAGAC 1 cut(s) 539
BstXI CCANNNNNNTGG 2 cut(s) 519, 871
BstZI CGGCCG 1 cut(s) 109
BsuRI GGCC 9 cut(s) 5, 105, 111, 131, 236, 254, 666, 885, 896
BtgI CCRYGG 2 cut(s) 231, 667
BtgZI GCGATG 1 cut(s) 288
BtsCI GGATG 3 cut(s) 156, 448, 787
BtsIMutI CAGTG 2 cut(s) 197, 827
Cac8I GCNNGC 2 cut(s) 80, 917
CfoI GCGC 3 cut(s) 145, 403, 597
Cfr13I GGNCC 2 cut(s) 130, 883
CseI GACGC 1 cut(s) 382
Csp6I GTAC 2 cut(s) 484, 730
CviAII CATG 6 cut(s) 139, 232, 365, 385, 695, 920
CviQI GTAC 2 cut(s) 484, 730
DdeI CTNAG 1 cut(s) 819
DpnI GATC 4 cut(s) 383, 573, 678, 797
DpnII GATC 4 cut(s) 381, 571, 676, 795
EaeI YGGCCR 3 cut(s) 109, 234, 664
EagI CGGCCG 1 cut(s) 109
Eam1104I CTCTTC 3 cut(s) 42, 89, 460
EarI CTCTTC 3 cut(s) 42, 89, 460
EclXI CGGCCG 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 693
Eco52I CGGCCG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 231
EcoT38I GRGCYC 1 cut(s) 693
ErhI CCWWGG 1 cut(s) 231
Esp3I CGTCTC 2 cut(s) 43, 400
FaeI CATG 6 cut(s) 142, 235, 368, 388, 698, 923
FalI AAGNNNNNCTT 2 cut(s) 798, 830
FatI CATG 6 cut(s) 138, 231, 364, 384, 694, 919
FokI GGATG 3 cut(s) 163, 435, 794
FriOI GRGCYC 1 cut(s) 693
GlaI GCGC 3 cut(s) 144, 402, 596
HaeII RGCGCY 1 cut(s) 146
HaeIII GGCC 9 cut(s) 5, 105, 111, 131, 236, 254, 666, 885, 896
HapII CCGG 2 cut(s) 838, 869
HgaI GACGC 1 cut(s) 382
HhaI GCGC 3 cut(s) 145, 403, 597
Hin1I GRCGYC 1 cut(s) 393
Hin1II CATG 6 cut(s) 142, 235, 368, 388, 698, 923
Hin6I GCGC 3 cut(s) 143, 401, 595
HinP1I GCGC 3 cut(s) 143, 401, 595
HinfI GANTC 5 cut(s) 125, 205, 242, 758, 949
HpaII CCGG 2 cut(s) 838, 869
HphI GGTGA 5 cut(s) 340, 446, 683, 895, 954
Hpy166II GTNNAC 3 cut(s) 190, 484, 943
Hpy188I TCNGA 4 cut(s) 124, 270, 552, 742
Hpy188III TCNNGA 5 cut(s) 296, 434, 680, 712, 878
Hpy8I GTNNAC 3 cut(s) 190, 484, 943
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 3 cut(s) 16, 166, 230
HpyCH4III ACNGT 1 cut(s) 831
HpyCH4V TGCA 3 cut(s) 264, 805, 943
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 88, 270
HpyF3I CTNAG 1 cut(s) 819
Hsp92I GRCGYC 1 cut(s) 393
Hsp92II CATG 6 cut(s) 142, 235, 368, 388, 698, 923
HspAI GCGC 3 cut(s) 143, 401, 595
KpnI GGTACC 1 cut(s) 733
Kzo9I GATC 4 cut(s) 381, 571, 676, 795
LguI GCTCTTC 2 cut(s) 89, 460
LmnI GCTCC 3 cut(s) 160, 327, 514
LpnPI CCDG 5 cut(s) 34, 419, 500, 851, 882
LweI GCATC 2 cut(s) 19, 463
MaeIII GTNAC 2 cut(s) 113, 346
MalI GATC 4 cut(s) 383, 573, 678, 797
MboI GATC 4 cut(s) 381, 571, 676, 795
MboII GAAGA 7 cut(s) 59, 76, 352, 477, 539, 668, 686
MhlI GDGCHC 3 cut(s) 165, 693, 945
MluCI AATT 5 cut(s) 330, 356, 553, 773, 899
MlyI GAGTC 4 cut(s) 134, 199, 251, 943
MmeI TCCRAC 2 cut(s) 138, 515
MseI TTAA 2 cut(s) 180, 909
MslI CAYNNNNRTG 1 cut(s) 869
MspI CCGG 2 cut(s) 838, 869
MspR9I CCNGG 1 cut(s) 838
Mva1269I GAATGC 1 cut(s) 264
MvnI CGCG 2 cut(s) 91, 597
MwoI GCNNNNNNNGC 3 cut(s) 11, 88, 270
NciI CCSGG 1 cut(s) 838
NcoI CCATGG 1 cut(s) 231
NdeII GATC 4 cut(s) 381, 571, 676, 795
NlaIII CATG 6 cut(s) 142, 235, 368, 388, 698, 923
NlaIV GGNNCC 2 cut(s) 524, 731
NmeAIII GCCGAG 1 cut(s) 87
NmuCI GTSAC 2 cut(s) 113, 346
NspI RCATGY 1 cut(s) 923
PciSI GCTCTTC 2 cut(s) 89, 460
PctI GAATGC 1 cut(s) 264
PfeI GAWTC 1 cut(s) 758
PflMI CCANNNNNTGG 1 cut(s) 139
PleI GAGTC 4 cut(s) 133, 199, 250, 943
PpsI GAGTC 4 cut(s) 133, 199, 250, 943
PspN4I GGNNCC 2 cut(s) 524, 731
PspPI GGNCC 2 cut(s) 130, 883
RsaI GTAC 2 cut(s) 485, 731
RsaNI GTAC 2 cut(s) 484, 730
RseI CAYNNNNRTG 1 cut(s) 869
SapI GCTCTTC 2 cut(s) 89, 460
SaqAI TTAA 2 cut(s) 180, 909
Sau3AI GATC 4 cut(s) 381, 571, 676, 795
Sau96I GGNCC 2 cut(s) 130, 883
SchI GAGTC 4 cut(s) 134, 199, 251, 943
ScrFI CCNGG 1 cut(s) 838
SduI GDGCHC 3 cut(s) 165, 693, 945
SetI ASST 5 cut(s) 59, 84, 519, 585, 627
SfaNI GCATC 2 cut(s) 19, 463
SmiMI CAYNNNNRTG 1 cut(s) 869
SmlI CTYRAG 1 cut(s) 878
SmoI CTYRAG 1 cut(s) 878
Sse9I AATT 5 cut(s) 330, 356, 553, 773, 899
SsiI CCGC 2 cut(s) 76, 564
StyD4I CCNGG 1 cut(s) 836
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 831
TaqI TCGA 2 cut(s) 72, 373
TasI AATT 5 cut(s) 330, 356, 553, 773, 899
TatI WGTACW 1 cut(s) 483
TfiI GAWTC 1 cut(s) 758
Tru1I TTAA 2 cut(s) 180, 909
Tru9I TTAA 2 cut(s) 180, 909
TscAI CASTG 2 cut(s) 204, 834
TseFI GTSAC 2 cut(s) 113, 346
Tsp45I GTSAC 2 cut(s) 113, 346
TspDTI ATGAA 3 cut(s) 437, 669, 762
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 2 cut(s) 204, 834
Van91I CCANNNNNTGG 1 cut(s) 139
VneI GTGCAC 1 cut(s) 941
XapI RAATTY 4 cut(s) 356, 553, 773, 899
XceI RCATGY 1 cut(s) 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.