RchiOBHm_Chr5g0048831

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
46216663 .. 46217979
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32653

Sequence Viewer

Length: 1149 bp
ATGGCTTCCTCCTCCTCTTCTTTGTCCCCATTGAAAGTCCGAACCACCAAAGAACAGTTCTACTCTTTCCACAACATTGACCGCAAGCTCTTCACCCGTCTTACATTGCATCTAGGCCGTGACCCGGGCGATTCTGCTCAGATTATGGCCTTTTGGATGTGGCTCGAGCACGGTGGTAAGGTCACCCACTTCATTCACAAAGCCCTTAACACTCTCCCCAACACCCTCCTCCACATCATGGCCGACGAGTCATGCATGGTCCTCAATGTCATTCAAAACGATGAATTTCCGATGGTCTTGGAATCAGATATCATTCCTCACGATATTCCCATTCTCCAAGGAATGACCAAAAGAGGCGTCACCCTCAGATTCTTCCATAAAAACCGCCTCAGCATCATCCGAGGACTCACCTTGTTTTTCAATGACGTGTGCTTGAGAGCCTTTGAGGACTTGTACATTACAGCTGCTCACTGCCAAAACAAGACTATAGATCCTATATCCACCGGAATAGGGTTACACCCAGAGCCGCAAAATTATGCAAGGAGGACGGTTCTAGTCAATAAGTACTACAATCCATTTCTCATTGGAGCTGCGACTTTTGACGCGCCTATGGAAACCATAGGAGACCTCTTCCTCCTCACCCCATGGATGGGGCTGTTGTTAACAGTAATAGTAGTTCCCCTTCGGAGAATTTGCGCCATGGATTTGTTGATCCCTATGATCTTAGCGCTCAGCGATTTCTTGAATAATGAAATGGCGGATATGCTGAGTCGTTTGCATTTGCATGACGATGATGGTGACGGTGGTGATATAGGCGGTGGTGTTCGGGGGGATCAAGTCGAGGAAGAAGTGTCTGCAGATGATAGGACTATTTTCTTGACATTTTCTAAGGGTATCCCATTTCTGAAAAGGAAGAAATATGGGGAATTTTTTGATGCTATCCATATGCAAGAAGTACAAGTAGCGGATCAGCAGCCTTTATATGCCCGCCTTGTGGTTCGTTCCGCTTCTTTTATTCCAGTGGTGCTCGAGGGACAAAGCAAGGCCAAATTTTCTATCAATGGAAAACATGTTTGGGCAAGAAAGTACGTGAAAAAGAATATTGTGATAGGAGAACAAAGTTCACCAAAGGGTGTTTTAGCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

382

Amino Acids

43.07

Weight (kDa)

6.93

Isoelectric Point (pI)

44.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000612)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 238
AccII CGCG 1 cut(s) 605
AciI CCGC 8 cut(s) 82, 385, 527, 758, 816, 965, 988, 1005
AclWI GGATC 4 cut(s) 485, 706, 840, 975
AcoI YGGCCR 1 cut(s) 240
AcsI RAATTY 4 cut(s) 284, 690, 926, 1049
AcyI GRCGYC 1 cut(s) 357
AfaI GTAC 4 cut(s) 455, 566, 957, 1088
AfeI AGCGCT 1 cut(s) 729
AfiI CCNNNNNNNGG 6 cut(s) 124, 238, 510, 649, 650, 994
AflIII ACRYGT 2 cut(s) 426, 1069
AgsI TTSAA 4 cut(s) 34, 275, 421, 745
AjiI CACGTC 1 cut(s) 427
AjuI GAANNNNNNNTTGG 4 cut(s) 41, 73, 1057, 1089
AluBI AGCT 4 cut(s) 88, 464, 590, 1142
AluI AGCT 4 cut(s) 88, 464, 590, 1142
Alw21I GWGCWC 2 cut(s) 171, 1029
Alw26I GTCTC 1 cut(s) 618
AlwI GGATC 4 cut(s) 485, 706, 840, 975
Ama87I CYCGRG 3 cut(s) 124, 164, 1028
Aor51HI AGCGCT 1 cut(s) 729
AoxI GGCC 4 cut(s) 115, 147, 240, 1044
ApeKI GCWGC 3 cut(s) 464, 590, 973
ApoI RAATTY 4 cut(s) 284, 690, 926, 1049
ArsI GACNNNNNNTTYG 2 cut(s) 342, 374
AspLEI GCGC 3 cut(s) 607, 698, 730
AspS9I GGNCC 1 cut(s) 259
AsuC2I CCSGG 2 cut(s) 125, 126
AsuHPI GGTGA 8 cut(s) 85, 175, 352, 400, 631, 809, 818, 1116
AvaI CYCGRG 3 cut(s) 124, 164, 1028
AvaII GGWCC 1 cut(s) 259
BarI GAAGNNNNNNTAC 2 cut(s) 666, 698
Bbv12I GWGCWC 2 cut(s) 171, 1029
BbvCI CCTCAGC 1 cut(s) 389
BbvI GCAGC 3 cut(s) 451, 577, 985
BccI CCATC 3 cut(s) 286, 643, 788
BceAI ACGGC 1 cut(s) 102
BciVI GTATCC 1 cut(s) 905
BcnI CCSGG 2 cut(s) 125, 126
BcoDI GTCTC 1 cut(s) 618
BfaI CTAG 2 cut(s) 113, 554
BfmI CTRYAG 2 cut(s) 486, 855
BfoI RGCGCY 1 cut(s) 731
BfuI GTATCC 1 cut(s) 905
BisI GCNGC 4 cut(s) 465, 527, 591, 974
BlpI GCTNAGC 1 cut(s) 731
BlsI GCNGC 4 cut(s) 466, 528, 592, 975
BmcAI AGTACT 1 cut(s) 566
Bme1390I CCNGG 2 cut(s) 125, 126
Bme18I GGWCC 1 cut(s) 259
BmeT110I CYCGRG 3 cut(s) 124, 164, 1028
BmgBI CACGTC 1 cut(s) 427
BmgT120I GGNCC 1 cut(s) 259
BmrFI CCNGG 2 cut(s) 125, 126
BmsI GCATC 3 cut(s) 118, 402, 925
Bpu10I CCTNAGC 1 cut(s) 389
Bpu1102I GCTNAGC 1 cut(s) 731
BpuEI CTTGAG 1 cut(s) 454
BpuMI CCSGG 2 cut(s) 125, 126
BsaAI YACGTR 1 cut(s) 1090
BsaHI GRCGYC 1 cut(s) 357
BsaI GGTCTC 1 cut(s) 618
BsaJI CCNNGG 5 cut(s) 124, 337, 400, 644, 699
BsaWI WCCGGW 1 cut(s) 503
Bsc4I CCNNNNNNNGG 6 cut(s) 124, 238, 510, 649, 650, 994
Bse1I ACTGG 1 cut(s) 1019
Bse3DI GCAATG 1 cut(s) 104
BseDI CCNNGG 5 cut(s) 124, 337, 400, 644, 699
BseGI GGATG 3 cut(s) 162, 396, 654
BseLI CCNNNNNNNGG 6 cut(s) 124, 238, 510, 649, 650, 994
BseMI GCAATG 1 cut(s) 104
BseMII CTCAG 5 cut(s) 152, 379, 403, 745, 758
BseNI ACTGG 1 cut(s) 1019
BseRI GAGGAG 3 cut(s) 4, 218, 626
BseXI GCAGC 3 cut(s) 451, 577, 985
Bsh1236I CGCG 1 cut(s) 605
BshFI GGCC 4 cut(s) 117, 149, 242, 1046
BsiHKAI GWGCWC 2 cut(s) 171, 1029
BsiHKCI CYCGRG 3 cut(s) 124, 164, 1028
BsiSI CCGG 2 cut(s) 125, 504
BslFI GGGAC 2 cut(s) 10, 1047
BslI CCNNNNNNNGG 6 cut(s) 124, 238, 510, 649, 650, 994
BsmAI GTCTC 1 cut(s) 618
BsmFI GGGAC 2 cut(s) 10, 1047
BsnI GGCC 4 cut(s) 117, 149, 242, 1046
Bso31I GGTCTC 1 cut(s) 618
BsoBI CYCGRG 3 cut(s) 124, 164, 1028
Bsp1286I GDGCHC 2 cut(s) 171, 1029
Bsp1407I TGTACA 1 cut(s) 453
Bsp143I GATC 5 cut(s) 490, 711, 720, 832, 967
Bsp1720I GCTNAGC 1 cut(s) 731
Bsp19I CCATGG 2 cut(s) 644, 699
BspACI CCGC 8 cut(s) 82, 385, 527, 758, 816, 965, 988, 1005
BspANI GGCC 4 cut(s) 117, 149, 242, 1046
BspCNI CTCAG 5 cut(s) 151, 378, 402, 744, 759
BspFNI CGCG 1 cut(s) 605
BspMAI CTGCAG 1 cut(s) 859
BspPI GGATC 4 cut(s) 485, 706, 840, 975
BspQI GCTCTTC 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 618
BsrDI GCAATG 1 cut(s) 104
BsrGI TGTACA 1 cut(s) 453
BsrI ACTGG 1 cut(s) 1019
BssECI CCNNGG 5 cut(s) 124, 337, 400, 644, 699
BssMI GATC 5 cut(s) 490, 711, 720, 832, 967
BssNI GRCGYC 1 cut(s) 357
BssT1I CCWWGG 3 cut(s) 337, 644, 699
Bst4CI ACNGT 5 cut(s) 57, 173, 550, 667, 803
Bst6I CTCTTC 3 cut(s) 22, 95, 635
BstACI GRCGYC 1 cut(s) 357
BstAUI TGTACA 1 cut(s) 453
BstBAI YACGTR 1 cut(s) 1090
BstC8I GCNNGC 2 cut(s) 86, 988
BstDEI CTNAG 7 cut(s) 138, 365, 389, 724, 731, 767, 888
BstDSI CCRYGG 2 cut(s) 644, 699
BstEII GGTNACC 1 cut(s) 181
BstF5I GGATG 3 cut(s) 162, 396, 654
BstFNI CGCG 1 cut(s) 605
BstH2I RGCGCY 1 cut(s) 731
BstHHI GCGC 3 cut(s) 607, 698, 730
BstKTI GATC 5 cut(s) 493, 714, 723, 835, 970
BstMAI GTCTC 1 cut(s) 618
BstMBI GATC 5 cut(s) 490, 711, 720, 832, 967
BstNSI RCATGY 1 cut(s) 1073
BstPI GGTNACC 1 cut(s) 181
BstSCI CCNGG 2 cut(s) 123, 124
BstSFI CTRYAG 2 cut(s) 486, 855
BstUI CGCG 1 cut(s) 605
BstV1I GCAGC 3 cut(s) 451, 577, 985
BstX2I RGATCY 1 cut(s) 490
BstYI RGATCY 1 cut(s) 490
BsuI GTATCC 1 cut(s) 905
BsuRI GGCC 4 cut(s) 117, 149, 242, 1046
BtgI CCRYGG 2 cut(s) 644, 699
BtrI CACGTC 1 cut(s) 427
BtsCI GGATG 3 cut(s) 162, 396, 654
BtsI GCAGTG 1 cut(s) 469
BtsIMutI CAGTG 2 cut(s) 469, 1026
Cac8I GCNNGC 2 cut(s) 86, 988
CfoI GCGC 3 cut(s) 607, 698, 730
Cfr13I GGNCC 1 cut(s) 259
Cfr9I CCCGGG 1 cut(s) 124
CseI GACGC 2 cut(s) 346, 611
Csp6I GTAC 4 cut(s) 454, 565, 956, 1087
CviAII CATG 7 cut(s) 238, 252, 256, 645, 700, 785, 1070
CviQI GTAC 4 cut(s) 454, 565, 956, 1087
DdeI CTNAG 7 cut(s) 138, 365, 389, 724, 731, 767, 888
DpnI GATC 5 cut(s) 492, 713, 722, 834, 969
DpnII GATC 5 cut(s) 490, 711, 720, 832, 967
EaeI YGGCCR 1 cut(s) 240
Eam1104I CTCTTC 3 cut(s) 22, 95, 635
EarI CTCTTC 3 cut(s) 22, 95, 635
EciI GGCGGA 1 cut(s) 773
Eco130I CCWWGG 3 cut(s) 337, 644, 699
Eco31I GGTCTC 1 cut(s) 618
Eco32I GATATC 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 259
Eco47III AGCGCT 1 cut(s) 729
Eco88I CYCGRG 3 cut(s) 124, 164, 1028
Eco91I GGTNACC 1 cut(s) 181
EcoO65I GGTNACC 1 cut(s) 181
EcoRV GATATC 1 cut(s) 310
EcoT14I CCWWGG 3 cut(s) 337, 644, 699
EcoT22I ATGCAT 1 cut(s) 257
ErhI CCWWGG 3 cut(s) 337, 644, 699
FaeI CATG 7 cut(s) 241, 255, 259, 648, 703, 788, 1073
FaqI GGGAC 2 cut(s) 10, 1047
FatI CATG 7 cut(s) 237, 251, 255, 644, 699, 784, 1069
FauI CCCGC 1 cut(s) 995
FauNDI CATATG 1 cut(s) 945
Fnu4HI GCNGC 4 cut(s) 465, 527, 591, 974
FokI GGATG 3 cut(s) 169, 383, 661
Fsp4HI GCNGC 4 cut(s) 465, 527, 591, 974
FspBI CTAG 2 cut(s) 113, 554
GlaI GCGC 3 cut(s) 606, 697, 729
GluI GCNGC 4 cut(s) 465, 527, 591, 974
HaeII RGCGCY 1 cut(s) 731
HaeIII GGCC 4 cut(s) 117, 149, 242, 1046
HapII CCGG 2 cut(s) 125, 504
HgaI GACGC 2 cut(s) 346, 611
HhaI GCGC 3 cut(s) 607, 698, 730
Hin1I GRCGYC 1 cut(s) 357
Hin1II CATG 7 cut(s) 241, 255, 259, 648, 703, 788, 1073
Hin6I GCGC 3 cut(s) 605, 696, 728
HinP1I GCGC 3 cut(s) 605, 696, 728
HincII GTYRAC 1 cut(s) 663
HindII GTYRAC 1 cut(s) 663
HinfI GANTC 6 cut(s) 131, 248, 302, 369, 405, 769
HpaI GTTAAC 1 cut(s) 663
HpaII CCGG 2 cut(s) 125, 504
HphI GGTGA 8 cut(s) 85, 175, 352, 400, 631, 809, 818, 1116
Hpy166II GTNNAC 2 cut(s) 663, 1124
Hpy188I TCNGA 8 cut(s) 41, 141, 291, 307, 368, 401, 687, 906
Hpy188III TCNNGA 3 cut(s) 320, 742, 877
Hpy8I GTNNAC 2 cut(s) 663, 1124
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 1 cut(s) 692
HpyCH4III ACNGT 5 cut(s) 57, 173, 550, 667, 803
HpyCH4IV ACGT 2 cut(s) 426, 1089
HpyCH4V TGCA 7 cut(s) 109, 255, 539, 778, 784, 857, 949
HpyF3I CTNAG 7 cut(s) 138, 365, 389, 724, 731, 767, 888
HpySE526I ACGT 2 cut(s) 426, 1089
Hsp92I GRCGYC 1 cut(s) 357
Hsp92II CATG 7 cut(s) 241, 255, 259, 648, 703, 788, 1073
HspAI GCGC 3 cut(s) 605, 696, 728
KspAI GTTAAC 1 cut(s) 663
Kzo9I GATC 5 cut(s) 490, 711, 720, 832, 967
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 1 cut(s) 587
LpnPI CCDG 4 cut(s) 138, 517, 534, 1032
Lsp1109I GCAGC 3 cut(s) 451, 577, 985
LweI GCATC 3 cut(s) 118, 402, 925
MaeI CTAG 2 cut(s) 113, 554
MaeII ACGT 2 cut(s) 426, 1089
MaeIII GTNAC 5 cut(s) 119, 181, 358, 513, 797
MalI GATC 5 cut(s) 492, 713, 722, 834, 969
MboI GATC 5 cut(s) 490, 711, 720, 832, 967
MboII GAAGA 6 cut(s) 9, 82, 364, 622, 857, 925
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 2 cut(s) 171, 1029
MluCI AATT 5 cut(s) 284, 532, 690, 926, 1049
MlyI GAGTC 3 cut(s) 257, 399, 778
Mph1103I ATGCAT 1 cut(s) 257
MseI TTAA 2 cut(s) 207, 662
MslI CAYNNNNRTG 2 cut(s) 783, 789
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 2 cut(s) 125, 504
MspR9I CCNGG 2 cut(s) 125, 126
MvnI CGCG 1 cut(s) 605
NciI CCSGG 2 cut(s) 125, 126
NcoI CCATGG 2 cut(s) 644, 699
NdeI CATATG 1 cut(s) 945
NdeII GATC 5 cut(s) 490, 711, 720, 832, 967
NlaIII CATG 7 cut(s) 241, 255, 259, 648, 703, 788, 1073
NmuCI GTSAC 4 cut(s) 119, 181, 358, 797
NsiI ATGCAT 1 cut(s) 257
NspI RCATGY 1 cut(s) 1073
PaeR7I CTCGAG 2 cut(s) 164, 1028
PciI ACATGT 1 cut(s) 1069
PciSI GCTCTTC 1 cut(s) 95
PfeI GAWTC 3 cut(s) 131, 302, 369
PflMI CCANNNNNTGG 1 cut(s) 238
PkrI GCNGC 4 cut(s) 466, 528, 592, 975
PleI GAGTC 3 cut(s) 256, 399, 777
PpsI GAGTC 3 cut(s) 256, 399, 777
Ppu21I YACGTR 1 cut(s) 1090
PscI ACATGT 1 cut(s) 1069
PspEI GGTNACC 1 cut(s) 181
PspPI GGNCC 1 cut(s) 259
PspXI VCTCGAGB 2 cut(s) 164, 1028
PsrI GAACNNNNNNTAC 2 cut(s) 660, 692
PstI CTGCAG 1 cut(s) 859
PsuI RGATCY 1 cut(s) 490
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 4 cut(s) 455, 566, 957, 1088
RsaNI GTAC 4 cut(s) 454, 565, 956, 1087
RseI CAYNNNNRTG 2 cut(s) 783, 789
SapI GCTCTTC 1 cut(s) 95
SaqAI TTAA 2 cut(s) 207, 662
SatI GCNGC 4 cut(s) 465, 527, 591, 974
Sau3AI GATC 5 cut(s) 490, 711, 720, 832, 967
Sau96I GGNCC 1 cut(s) 259
ScaI AGTACT 1 cut(s) 566
SchI GAGTC 3 cut(s) 257, 399, 778
ScrFI CCNGG 2 cut(s) 125, 126
SduI GDGCHC 2 cut(s) 171, 1029
SetI ASST 9 cut(s) 90, 183, 413, 429, 466, 592, 630, 1092, 1144
SfaNI GCATC 3 cut(s) 118, 402, 925
SfcI CTRYAG 2 cut(s) 486, 855
Sfr274I CTCGAG 2 cut(s) 164, 1028
SinI GGWCC 1 cut(s) 259
SlaI CTCGAG 2 cut(s) 164, 1028
SmaI CCCGGG 1 cut(s) 126
SmiMI CAYNNNNRTG 2 cut(s) 783, 789
SmlI CTYRAG 3 cut(s) 164, 433, 1028
SmoI CTYRAG 3 cut(s) 164, 433, 1028
Sse9I AATT 5 cut(s) 284, 532, 690, 926, 1049
SsiI CCGC 8 cut(s) 82, 385, 527, 758, 816, 965, 988, 1005
SspI AATATT 1 cut(s) 1102
SspMI CTAG 2 cut(s) 113, 554
StyD4I CCNGG 2 cut(s) 123, 124
StyI CCWWGG 3 cut(s) 337, 644, 699
TaaI ACNGT 5 cut(s) 57, 173, 550, 667, 803
TaiI ACGT 2 cut(s) 429, 1092
TaqI TCGA 3 cut(s) 165, 840, 1029
TasI AATT 5 cut(s) 284, 532, 690, 926, 1049
TatI WGTACW 3 cut(s) 453, 564, 955
TauI GCSGC 1 cut(s) 529
TfiI GAWTC 3 cut(s) 131, 302, 369
Tru1I TTAA 2 cut(s) 207, 662
Tru9I TTAA 2 cut(s) 207, 662
TscAI CASTG 2 cut(s) 476, 1026
TseFI GTSAC 4 cut(s) 119, 181, 358, 797
TseI GCWGC 3 cut(s) 464, 590, 973
Tsp45I GTSAC 4 cut(s) 119, 181, 358, 797
TspDTI ATGAA 3 cut(s) 181, 297, 765
TspMI CCCGGG 1 cut(s) 124
TspRI CASTG 2 cut(s) 476, 1026
Van91I CCANNNNNTGG 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 4 cut(s) 284, 690, 926, 1049
XceI RCATGY 1 cut(s) 1073
XhoI CTCGAG 2 cut(s) 164, 1028
XmaI CCCGGG 1 cut(s) 124
XspI CTAG 2 cut(s) 113, 554
ZrmI AGTACT 1 cut(s) 566
Zsp2I ATGCAT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.