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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 238 |
| AccII | CGCG | 1 cut(s) | 605 |
| AciI | CCGC | 8 cut(s) | 82, 385, 527, 758, 816, 965, 988, 1005 |
| AclWI | GGATC | 4 cut(s) | 485, 706, 840, 975 |
| AcoI | YGGCCR | 1 cut(s) | 240 |
| AcsI | RAATTY | 4 cut(s) | 284, 690, 926, 1049 |
| AcyI | GRCGYC | 1 cut(s) | 357 |
| AfaI | GTAC | 4 cut(s) | 455, 566, 957, 1088 |
| AfeI | AGCGCT | 1 cut(s) | 729 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 124, 238, 510, 649, 650, 994 |
| AflIII | ACRYGT | 2 cut(s) | 426, 1069 |
| AgsI | TTSAA | 4 cut(s) | 34, 275, 421, 745 |
| AjiI | CACGTC | 1 cut(s) | 427 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 41, 73, 1057, 1089 |
| AluBI | AGCT | 4 cut(s) | 88, 464, 590, 1142 |
| AluI | AGCT | 4 cut(s) | 88, 464, 590, 1142 |
| Alw21I | GWGCWC | 2 cut(s) | 171, 1029 |
| Alw26I | GTCTC | 1 cut(s) | 618 |
| AlwI | GGATC | 4 cut(s) | 485, 706, 840, 975 |
| Ama87I | CYCGRG | 3 cut(s) | 124, 164, 1028 |
| Aor51HI | AGCGCT | 1 cut(s) | 729 |
| AoxI | GGCC | 4 cut(s) | 115, 147, 240, 1044 |
| ApeKI | GCWGC | 3 cut(s) | 464, 590, 973 |
| ApoI | RAATTY | 4 cut(s) | 284, 690, 926, 1049 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 342, 374 |
| AspLEI | GCGC | 3 cut(s) | 607, 698, 730 |
| AspS9I | GGNCC | 1 cut(s) | 259 |
| AsuC2I | CCSGG | 2 cut(s) | 125, 126 |
| AsuHPI | GGTGA | 8 cut(s) | 85, 175, 352, 400, 631, 809, 818, 1116 |
| AvaI | CYCGRG | 3 cut(s) | 124, 164, 1028 |
| AvaII | GGWCC | 1 cut(s) | 259 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 666, 698 |
| Bbv12I | GWGCWC | 2 cut(s) | 171, 1029 |
| BbvCI | CCTCAGC | 1 cut(s) | 389 |
| BbvI | GCAGC | 3 cut(s) | 451, 577, 985 |
| BccI | CCATC | 3 cut(s) | 286, 643, 788 |
| BceAI | ACGGC | 1 cut(s) | 102 |
| BciVI | GTATCC | 1 cut(s) | 905 |
| BcnI | CCSGG | 2 cut(s) | 125, 126 |
| BcoDI | GTCTC | 1 cut(s) | 618 |
| BfaI | CTAG | 2 cut(s) | 113, 554 |
| BfmI | CTRYAG | 2 cut(s) | 486, 855 |
| BfoI | RGCGCY | 1 cut(s) | 731 |
| BfuI | GTATCC | 1 cut(s) | 905 |
| BisI | GCNGC | 4 cut(s) | 465, 527, 591, 974 |
| BlpI | GCTNAGC | 1 cut(s) | 731 |
| BlsI | GCNGC | 4 cut(s) | 466, 528, 592, 975 |
| BmcAI | AGTACT | 1 cut(s) | 566 |
| Bme1390I | CCNGG | 2 cut(s) | 125, 126 |
| Bme18I | GGWCC | 1 cut(s) | 259 |
| BmeT110I | CYCGRG | 3 cut(s) | 124, 164, 1028 |
| BmgBI | CACGTC | 1 cut(s) | 427 |
| BmgT120I | GGNCC | 1 cut(s) | 259 |
| BmrFI | CCNGG | 2 cut(s) | 125, 126 |
| BmsI | GCATC | 3 cut(s) | 118, 402, 925 |
| Bpu10I | CCTNAGC | 1 cut(s) | 389 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 731 |
| BpuEI | CTTGAG | 1 cut(s) | 454 |
| BpuMI | CCSGG | 2 cut(s) | 125, 126 |
| BsaAI | YACGTR | 1 cut(s) | 1090 |
| BsaHI | GRCGYC | 1 cut(s) | 357 |
| BsaI | GGTCTC | 1 cut(s) | 618 |
| BsaJI | CCNNGG | 5 cut(s) | 124, 337, 400, 644, 699 |
| BsaWI | WCCGGW | 1 cut(s) | 503 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 124, 238, 510, 649, 650, 994 |
| Bse1I | ACTGG | 1 cut(s) | 1019 |
| Bse3DI | GCAATG | 1 cut(s) | 104 |
| BseDI | CCNNGG | 5 cut(s) | 124, 337, 400, 644, 699 |
| BseGI | GGATG | 3 cut(s) | 162, 396, 654 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 124, 238, 510, 649, 650, 994 |
| BseMI | GCAATG | 1 cut(s) | 104 |
| BseMII | CTCAG | 5 cut(s) | 152, 379, 403, 745, 758 |
| BseNI | ACTGG | 1 cut(s) | 1019 |
| BseRI | GAGGAG | 3 cut(s) | 4, 218, 626 |
| BseXI | GCAGC | 3 cut(s) | 451, 577, 985 |
| Bsh1236I | CGCG | 1 cut(s) | 605 |
| BshFI | GGCC | 4 cut(s) | 117, 149, 242, 1046 |
| BsiHKAI | GWGCWC | 2 cut(s) | 171, 1029 |
| BsiHKCI | CYCGRG | 3 cut(s) | 124, 164, 1028 |
| BsiSI | CCGG | 2 cut(s) | 125, 504 |
| BslFI | GGGAC | 2 cut(s) | 10, 1047 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 124, 238, 510, 649, 650, 994 |
| BsmAI | GTCTC | 1 cut(s) | 618 |
| BsmFI | GGGAC | 2 cut(s) | 10, 1047 |
| BsnI | GGCC | 4 cut(s) | 117, 149, 242, 1046 |
| Bso31I | GGTCTC | 1 cut(s) | 618 |
| BsoBI | CYCGRG | 3 cut(s) | 124, 164, 1028 |
| Bsp1286I | GDGCHC | 2 cut(s) | 171, 1029 |
| Bsp1407I | TGTACA | 1 cut(s) | 453 |
| Bsp143I | GATC | 5 cut(s) | 490, 711, 720, 832, 967 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 731 |
| Bsp19I | CCATGG | 2 cut(s) | 644, 699 |
| BspACI | CCGC | 8 cut(s) | 82, 385, 527, 758, 816, 965, 988, 1005 |
| BspANI | GGCC | 4 cut(s) | 117, 149, 242, 1046 |
| BspCNI | CTCAG | 5 cut(s) | 151, 378, 402, 744, 759 |
| BspFNI | CGCG | 1 cut(s) | 605 |
| BspMAI | CTGCAG | 1 cut(s) | 859 |
| BspPI | GGATC | 4 cut(s) | 485, 706, 840, 975 |
| BspQI | GCTCTTC | 1 cut(s) | 95 |
| BspTNI | GGTCTC | 1 cut(s) | 618 |
| BsrDI | GCAATG | 1 cut(s) | 104 |
| BsrGI | TGTACA | 1 cut(s) | 453 |
| BsrI | ACTGG | 1 cut(s) | 1019 |
| BssECI | CCNNGG | 5 cut(s) | 124, 337, 400, 644, 699 |
| BssMI | GATC | 5 cut(s) | 490, 711, 720, 832, 967 |
| BssNI | GRCGYC | 1 cut(s) | 357 |
| BssT1I | CCWWGG | 3 cut(s) | 337, 644, 699 |
| Bst4CI | ACNGT | 5 cut(s) | 57, 173, 550, 667, 803 |
| Bst6I | CTCTTC | 3 cut(s) | 22, 95, 635 |
| BstACI | GRCGYC | 1 cut(s) | 357 |
| BstAUI | TGTACA | 1 cut(s) | 453 |
| BstBAI | YACGTR | 1 cut(s) | 1090 |
| BstC8I | GCNNGC | 2 cut(s) | 86, 988 |
| BstDEI | CTNAG | 7 cut(s) | 138, 365, 389, 724, 731, 767, 888 |
| BstDSI | CCRYGG | 2 cut(s) | 644, 699 |
| BstEII | GGTNACC | 1 cut(s) | 181 |
| BstF5I | GGATG | 3 cut(s) | 162, 396, 654 |
| BstFNI | CGCG | 1 cut(s) | 605 |
| BstH2I | RGCGCY | 1 cut(s) | 731 |
| BstHHI | GCGC | 3 cut(s) | 607, 698, 730 |
| BstKTI | GATC | 5 cut(s) | 493, 714, 723, 835, 970 |
| BstMAI | GTCTC | 1 cut(s) | 618 |
| BstMBI | GATC | 5 cut(s) | 490, 711, 720, 832, 967 |
| BstNSI | RCATGY | 1 cut(s) | 1073 |
| BstPI | GGTNACC | 1 cut(s) | 181 |
| BstSCI | CCNGG | 2 cut(s) | 123, 124 |
| BstSFI | CTRYAG | 2 cut(s) | 486, 855 |
| BstUI | CGCG | 1 cut(s) | 605 |
| BstV1I | GCAGC | 3 cut(s) | 451, 577, 985 |
| BstX2I | RGATCY | 1 cut(s) | 490 |
| BstYI | RGATCY | 1 cut(s) | 490 |
| BsuI | GTATCC | 1 cut(s) | 905 |
| BsuRI | GGCC | 4 cut(s) | 117, 149, 242, 1046 |
| BtgI | CCRYGG | 2 cut(s) | 644, 699 |
| BtrI | CACGTC | 1 cut(s) | 427 |
| BtsCI | GGATG | 3 cut(s) | 162, 396, 654 |
| BtsI | GCAGTG | 1 cut(s) | 469 |
| BtsIMutI | CAGTG | 2 cut(s) | 469, 1026 |
| Cac8I | GCNNGC | 2 cut(s) | 86, 988 |
| CfoI | GCGC | 3 cut(s) | 607, 698, 730 |
| Cfr13I | GGNCC | 1 cut(s) | 259 |
| Cfr9I | CCCGGG | 1 cut(s) | 124 |
| CseI | GACGC | 2 cut(s) | 346, 611 |
| Csp6I | GTAC | 4 cut(s) | 454, 565, 956, 1087 |
| CviAII | CATG | 7 cut(s) | 238, 252, 256, 645, 700, 785, 1070 |
| CviQI | GTAC | 4 cut(s) | 454, 565, 956, 1087 |
| DdeI | CTNAG | 7 cut(s) | 138, 365, 389, 724, 731, 767, 888 |
| DpnI | GATC | 5 cut(s) | 492, 713, 722, 834, 969 |
| DpnII | GATC | 5 cut(s) | 490, 711, 720, 832, 967 |
| EaeI | YGGCCR | 1 cut(s) | 240 |
| Eam1104I | CTCTTC | 3 cut(s) | 22, 95, 635 |
| EarI | CTCTTC | 3 cut(s) | 22, 95, 635 |
| EciI | GGCGGA | 1 cut(s) | 773 |
| Eco130I | CCWWGG | 3 cut(s) | 337, 644, 699 |
| Eco31I | GGTCTC | 1 cut(s) | 618 |
| Eco32I | GATATC | 1 cut(s) | 310 |
| Eco47I | GGWCC | 1 cut(s) | 259 |
| Eco47III | AGCGCT | 1 cut(s) | 729 |
| Eco88I | CYCGRG | 3 cut(s) | 124, 164, 1028 |
| Eco91I | GGTNACC | 1 cut(s) | 181 |
| EcoO65I | GGTNACC | 1 cut(s) | 181 |
| EcoRV | GATATC | 1 cut(s) | 310 |
| EcoT14I | CCWWGG | 3 cut(s) | 337, 644, 699 |
| EcoT22I | ATGCAT | 1 cut(s) | 257 |
| ErhI | CCWWGG | 3 cut(s) | 337, 644, 699 |
| FaeI | CATG | 7 cut(s) | 241, 255, 259, 648, 703, 788, 1073 |
| FaqI | GGGAC | 2 cut(s) | 10, 1047 |
| FatI | CATG | 7 cut(s) | 237, 251, 255, 644, 699, 784, 1069 |
| FauI | CCCGC | 1 cut(s) | 995 |
| FauNDI | CATATG | 1 cut(s) | 945 |
| Fnu4HI | GCNGC | 4 cut(s) | 465, 527, 591, 974 |
| FokI | GGATG | 3 cut(s) | 169, 383, 661 |
| Fsp4HI | GCNGC | 4 cut(s) | 465, 527, 591, 974 |
| FspBI | CTAG | 2 cut(s) | 113, 554 |
| GlaI | GCGC | 3 cut(s) | 606, 697, 729 |
| GluI | GCNGC | 4 cut(s) | 465, 527, 591, 974 |
| HaeII | RGCGCY | 1 cut(s) | 731 |
| HaeIII | GGCC | 4 cut(s) | 117, 149, 242, 1046 |
| HapII | CCGG | 2 cut(s) | 125, 504 |
| HgaI | GACGC | 2 cut(s) | 346, 611 |
| HhaI | GCGC | 3 cut(s) | 607, 698, 730 |
| Hin1I | GRCGYC | 1 cut(s) | 357 |
| Hin1II | CATG | 7 cut(s) | 241, 255, 259, 648, 703, 788, 1073 |
| Hin6I | GCGC | 3 cut(s) | 605, 696, 728 |
| HinP1I | GCGC | 3 cut(s) | 605, 696, 728 |
| HincII | GTYRAC | 1 cut(s) | 663 |
| HindII | GTYRAC | 1 cut(s) | 663 |
| HinfI | GANTC | 6 cut(s) | 131, 248, 302, 369, 405, 769 |
| HpaI | GTTAAC | 1 cut(s) | 663 |
| HpaII | CCGG | 2 cut(s) | 125, 504 |
| HphI | GGTGA | 8 cut(s) | 85, 175, 352, 400, 631, 809, 818, 1116 |
| Hpy166II | GTNNAC | 2 cut(s) | 663, 1124 |
| Hpy188I | TCNGA | 8 cut(s) | 41, 141, 291, 307, 368, 401, 687, 906 |
| Hpy188III | TCNNGA | 3 cut(s) | 320, 742, 877 |
| Hpy8I | GTNNAC | 2 cut(s) | 663, 1124 |
| Hpy99I | CGWCG | 1 cut(s) | 248 |
| HpyAV | CCTTC | 1 cut(s) | 692 |
| HpyCH4III | ACNGT | 5 cut(s) | 57, 173, 550, 667, 803 |
| HpyCH4IV | ACGT | 2 cut(s) | 426, 1089 |
| HpyCH4V | TGCA | 7 cut(s) | 109, 255, 539, 778, 784, 857, 949 |
| HpyF3I | CTNAG | 7 cut(s) | 138, 365, 389, 724, 731, 767, 888 |
| HpySE526I | ACGT | 2 cut(s) | 426, 1089 |
| Hsp92I | GRCGYC | 1 cut(s) | 357 |
| Hsp92II | CATG | 7 cut(s) | 241, 255, 259, 648, 703, 788, 1073 |
| HspAI | GCGC | 3 cut(s) | 605, 696, 728 |
| KspAI | GTTAAC | 1 cut(s) | 663 |
| Kzo9I | GATC | 5 cut(s) | 490, 711, 720, 832, 967 |
| LguI | GCTCTTC | 1 cut(s) | 95 |
| LmnI | GCTCC | 1 cut(s) | 587 |
| LpnPI | CCDG | 4 cut(s) | 138, 517, 534, 1032 |
| Lsp1109I | GCAGC | 3 cut(s) | 451, 577, 985 |
| LweI | GCATC | 3 cut(s) | 118, 402, 925 |
| MaeI | CTAG | 2 cut(s) | 113, 554 |
| MaeII | ACGT | 2 cut(s) | 426, 1089 |
| MaeIII | GTNAC | 5 cut(s) | 119, 181, 358, 513, 797 |
| MalI | GATC | 5 cut(s) | 492, 713, 722, 834, 969 |
| MboI | GATC | 5 cut(s) | 490, 711, 720, 832, 967 |
| MboII | GAAGA | 6 cut(s) | 9, 82, 364, 622, 857, 925 |
| MflI | RGATCY | 1 cut(s) | 490 |
| MhlI | GDGCHC | 2 cut(s) | 171, 1029 |
| MluCI | AATT | 5 cut(s) | 284, 532, 690, 926, 1049 |
| MlyI | GAGTC | 3 cut(s) | 257, 399, 778 |
| Mph1103I | ATGCAT | 1 cut(s) | 257 |
| MseI | TTAA | 2 cut(s) | 207, 662 |
| MslI | CAYNNNNRTG | 2 cut(s) | 783, 789 |
| MspA1I | CMGCKG | 1 cut(s) | 464 |
| MspI | CCGG | 2 cut(s) | 125, 504 |
| MspR9I | CCNGG | 2 cut(s) | 125, 126 |
| MvnI | CGCG | 1 cut(s) | 605 |
| NciI | CCSGG | 2 cut(s) | 125, 126 |
| NcoI | CCATGG | 2 cut(s) | 644, 699 |
| NdeI | CATATG | 1 cut(s) | 945 |
| NdeII | GATC | 5 cut(s) | 490, 711, 720, 832, 967 |
| NlaIII | CATG | 7 cut(s) | 241, 255, 259, 648, 703, 788, 1073 |
| NmuCI | GTSAC | 4 cut(s) | 119, 181, 358, 797 |
| NsiI | ATGCAT | 1 cut(s) | 257 |
| NspI | RCATGY | 1 cut(s) | 1073 |
| PaeR7I | CTCGAG | 2 cut(s) | 164, 1028 |
| PciI | ACATGT | 1 cut(s) | 1069 |
| PciSI | GCTCTTC | 1 cut(s) | 95 |
| PfeI | GAWTC | 3 cut(s) | 131, 302, 369 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 238 |
| PkrI | GCNGC | 4 cut(s) | 466, 528, 592, 975 |
| PleI | GAGTC | 3 cut(s) | 256, 399, 777 |
| PpsI | GAGTC | 3 cut(s) | 256, 399, 777 |
| Ppu21I | YACGTR | 1 cut(s) | 1090 |
| PscI | ACATGT | 1 cut(s) | 1069 |
| PspEI | GGTNACC | 1 cut(s) | 181 |
| PspPI | GGNCC | 1 cut(s) | 259 |
| PspXI | VCTCGAGB | 2 cut(s) | 164, 1028 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 660, 692 |
| PstI | CTGCAG | 1 cut(s) | 859 |
| PsuI | RGATCY | 1 cut(s) | 490 |
| PvuII | CAGCTG | 1 cut(s) | 464 |
| RsaI | GTAC | 4 cut(s) | 455, 566, 957, 1088 |
| RsaNI | GTAC | 4 cut(s) | 454, 565, 956, 1087 |
| RseI | CAYNNNNRTG | 2 cut(s) | 783, 789 |
| SapI | GCTCTTC | 1 cut(s) | 95 |
| SaqAI | TTAA | 2 cut(s) | 207, 662 |
| SatI | GCNGC | 4 cut(s) | 465, 527, 591, 974 |
| Sau3AI | GATC | 5 cut(s) | 490, 711, 720, 832, 967 |
| Sau96I | GGNCC | 1 cut(s) | 259 |
| ScaI | AGTACT | 1 cut(s) | 566 |
| SchI | GAGTC | 3 cut(s) | 257, 399, 778 |
| ScrFI | CCNGG | 2 cut(s) | 125, 126 |
| SduI | GDGCHC | 2 cut(s) | 171, 1029 |
| SetI | ASST | 9 cut(s) | 90, 183, 413, 429, 466, 592, 630, 1092, 1144 |
| SfaNI | GCATC | 3 cut(s) | 118, 402, 925 |
| SfcI | CTRYAG | 2 cut(s) | 486, 855 |
| Sfr274I | CTCGAG | 2 cut(s) | 164, 1028 |
| SinI | GGWCC | 1 cut(s) | 259 |
| SlaI | CTCGAG | 2 cut(s) | 164, 1028 |
| SmaI | CCCGGG | 1 cut(s) | 126 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 783, 789 |
| SmlI | CTYRAG | 3 cut(s) | 164, 433, 1028 |
| SmoI | CTYRAG | 3 cut(s) | 164, 433, 1028 |
| Sse9I | AATT | 5 cut(s) | 284, 532, 690, 926, 1049 |
| SsiI | CCGC | 8 cut(s) | 82, 385, 527, 758, 816, 965, 988, 1005 |
| SspI | AATATT | 1 cut(s) | 1102 |
| SspMI | CTAG | 2 cut(s) | 113, 554 |
| StyD4I | CCNGG | 2 cut(s) | 123, 124 |
| StyI | CCWWGG | 3 cut(s) | 337, 644, 699 |
| TaaI | ACNGT | 5 cut(s) | 57, 173, 550, 667, 803 |
| TaiI | ACGT | 2 cut(s) | 429, 1092 |
| TaqI | TCGA | 3 cut(s) | 165, 840, 1029 |
| TasI | AATT | 5 cut(s) | 284, 532, 690, 926, 1049 |
| TatI | WGTACW | 3 cut(s) | 453, 564, 955 |
| TauI | GCSGC | 1 cut(s) | 529 |
| TfiI | GAWTC | 3 cut(s) | 131, 302, 369 |
| Tru1I | TTAA | 2 cut(s) | 207, 662 |
| Tru9I | TTAA | 2 cut(s) | 207, 662 |
| TscAI | CASTG | 2 cut(s) | 476, 1026 |
| TseFI | GTSAC | 4 cut(s) | 119, 181, 358, 797 |
| TseI | GCWGC | 3 cut(s) | 464, 590, 973 |
| Tsp45I | GTSAC | 4 cut(s) | 119, 181, 358, 797 |
| TspDTI | ATGAA | 3 cut(s) | 181, 297, 765 |
| TspMI | CCCGGG | 1 cut(s) | 124 |
| TspRI | CASTG | 2 cut(s) | 476, 1026 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 238 |
| VpaK11BI | GGWCC | 1 cut(s) | 259 |
| XapI | RAATTY | 4 cut(s) | 284, 690, 926, 1049 |
| XceI | RCATGY | 1 cut(s) | 1073 |
| XhoI | CTCGAG | 2 cut(s) | 164, 1028 |
| XmaI | CCCGGG | 1 cut(s) | 124 |
| XspI | CTAG | 2 cut(s) | 113, 554 |
| ZrmI | AGTACT | 1 cut(s) | 566 |
| Zsp2I | ATGCAT | 1 cut(s) | 257 |