RLG00000027499

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000612
Physical Location & Seq
Reverse (-)
12203570 .. 12204542
973 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027499

Sequence Viewer

Length: 786 bp
ATGGCTAATGAGTCATGCATGGTCCTCAACATCATTCAGAATGACAACTTCCTGGTGATCTTGGAATCTGACACCATCCCTCATGATATTCCTATCTTTCAAGCAATAACCAAGTACGGTGTTACCCTCAAATTCTTCCATAATAACCGCCTTAGCATCATCCGAGGAGTCACATTGTTCTTCAATGAAGTGTGCTTGAGAGCCTTTGAGGACTTGTATGTTAATGTTGCTCACTACCAGAACAAGATAGTAAATCATATAGCCACCAGAATAAGGCTACACCCGGAGTGGCAAAATTATGTTAGGAGGCCGGTTCTAGTCAATAATTTTGATGCACCTATGAAAATCATCGAACCTCTTCCTTCACACCCCATGGATAGTATTGTAGTTAACAATAATAGTCATATTAAATGTGGAACCCTCGCGCGGCTGGCTCATCTGGAGTTTTTGCACTGTTGTTTTGTTGATCCTTATGATCTTGGGGCTCAACGTGATATTTTTCGTTTGCTTGTGCATGATGATCATAGAGATGGATGTTATATAATTGGTGGTGGTCGGTGGAATCAAGTTAAGGAAGAAGTGGTTGCGGATGATAAGTTCTTCACAAGGAAATATGGGGATTTTTTTGATGCTATCCATATGCAAGAAGTACAGGGAAAGGATCAGCAGGCTCTATATGCCCGCATTGTGGTTCGCTTCGCTTCCTTTATTCCAGTGGTGCTTGAGGGACAAAGCAAGGTAAAATCATCATCAATAGAAAACATGTTTGGGCTAGGAAATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

30.1

Weight (kDa)

6.45

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 425, 427
AciI CCGC 4 cut(s) 148, 427, 587, 682
AclWI GGATC 2 cut(s) 461, 669
AcsI RAATTY 1 cut(s) 131
AfaI GTAC 2 cut(s) 116, 651
AfiI CCNNNNNNNGG 3 cut(s) 273, 426, 688
AflIII ACRYGT 1 cut(s) 762
AgsI TTSAA 2 cut(s) 101, 184
AjnI CCWGG 1 cut(s) 51
AjuI GAANNNNNNNTTGG 2 cut(s) 750, 782
AloI GAACNNNNNNTCC 2 cut(s) 581, 613
AlwI GGATC 2 cut(s) 461, 669
AoxI GGCC 1 cut(s) 308
ApoI RAATTY 1 cut(s) 131
Asp700I GAANNNNTTC 1 cut(s) 357
AspLEI GCGC 1 cut(s) 427
AspS9I GGNCC 1 cut(s) 22
AsuC2I CCSGG 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 1 cut(s) 22
BanII GRGCYC 1 cut(s) 487
BccI CCATC 2 cut(s) 83, 524
BciT130I CCWGG 1 cut(s) 53
BclI TGATCA 1 cut(s) 520
BcnI CCSGG 1 cut(s) 284
BfaI CTAG 2 cut(s) 317, 773
BisI GCNGC 1 cut(s) 428
BlsI GCNGC 1 cut(s) 429
Bme1390I CCNGG 2 cut(s) 53, 284
Bme18I GGWCC 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 418
BmrFI CCNGG 2 cut(s) 53, 284
BmsI GCATC 3 cut(s) 165, 322, 619
BpmI CTGGAG 1 cut(s) 461
Bpu10I CCTNAGC 1 cut(s) 152
BpuEI CTTGAG 2 cut(s) 217, 743
BpuMI CCSGG 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 163, 372
Bsc4I CCNNNNNNNGG 3 cut(s) 273, 426, 688
Bse118I RCCGGY 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 713
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 2 cut(s) 163, 372
BseGI GGATG 4 cut(s) 75, 159, 539, 595
BseLI CCNNNNNNNGG 3 cut(s) 273, 426, 688
BseNI ACTGG 1 cut(s) 713
BseRI GAGGAG 1 cut(s) 180
Bsh1236I CGCG 2 cut(s) 425, 427
BshFI GGCC 1 cut(s) 310
BsiSI CCGG 2 cut(s) 284, 311
BslFI GGGAC 1 cut(s) 741
BslI CCNNNNNNNGG 3 cut(s) 273, 426, 688
BsmFI GGGAC 1 cut(s) 741
BsnI GGCC 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 487
Bsp143I GATC 5 cut(s) 57, 466, 475, 520, 661
Bsp19I CCATGG 1 cut(s) 372
BspACI CCGC 4 cut(s) 148, 427, 587, 682
BspANI GGCC 1 cut(s) 310
BspFNI CGCG 2 cut(s) 425, 427
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 418
BspPI GGATC 2 cut(s) 461, 669
BsrFI RCCGGY 1 cut(s) 310
BsrI ACTGG 1 cut(s) 713
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 163, 372
BssMI GATC 5 cut(s) 57, 466, 475, 520, 661
BssT1I CCWWGG 1 cut(s) 372
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 2 cut(s) 119, 455
Bst6I CTCTTC 1 cut(s) 363
BstC8I GCNNGC 3 cut(s) 432, 669, 682
BstDEI CTNAG 1 cut(s) 152
BstDSI CCRYGG 1 cut(s) 372
BstF5I GGATG 4 cut(s) 75, 159, 539, 595
BstFNI CGCG 2 cut(s) 425, 427
BstHHI GCGC 1 cut(s) 427
BstKTI GATC 5 cut(s) 60, 469, 478, 523, 664
BstMBI GATC 5 cut(s) 57, 466, 475, 520, 661
BstMWI GCNNNNNNNGC 2 cut(s) 431, 677
BstNI CCWGG 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 766
BstSCI CCNGG 2 cut(s) 51, 282
BstUI CGCG 2 cut(s) 425, 427
BsuRI GGCC 1 cut(s) 310
BtgI CCRYGG 1 cut(s) 372
BtsCI GGATG 4 cut(s) 75, 159, 539, 595
BtsIMutI CAGTG 2 cut(s) 451, 720
Cac8I GCNNGC 3 cut(s) 432, 669, 682
CciI TCATGA 1 cut(s) 82
CfoI GCGC 1 cut(s) 427
Cfr10I RCCGGY 1 cut(s) 310
Cfr13I GGNCC 1 cut(s) 22
Csp6I GTAC 2 cut(s) 115, 650
CviAII CATG 6 cut(s) 15, 19, 83, 373, 515, 763
CviQI GTAC 2 cut(s) 115, 650
DdeI CTNAG 1 cut(s) 152
DpnI GATC 5 cut(s) 59, 468, 477, 522, 663
DpnII GATC 5 cut(s) 57, 466, 475, 520, 661
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 487
Eco47I GGWCC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 372
EcoT22I ATGCAT 1 cut(s) 20
EcoT38I GRGCYC 1 cut(s) 487
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 6 cut(s) 18, 22, 86, 376, 518, 766
FaqI GGGAC 1 cut(s) 741
FatI CATG 6 cut(s) 14, 18, 82, 372, 514, 762
FauI CCCGC 1 cut(s) 689
FauNDI CATATG 1 cut(s) 639
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 1 cut(s) 428
FokI GGATG 4 cut(s) 62, 146, 546, 602
FriOI GRGCYC 1 cut(s) 487
Fsp4HI GCNGC 1 cut(s) 428
FspBI CTAG 2 cut(s) 317, 773
GlaI GCGC 1 cut(s) 426
GluI GCNGC 1 cut(s) 428
GsuI CTGGAG 1 cut(s) 461
HaeIII GGCC 1 cut(s) 310
HapII CCGG 2 cut(s) 284, 311
HhaI GCGC 1 cut(s) 427
Hin1II CATG 6 cut(s) 18, 22, 86, 376, 518, 766
Hin6I GCGC 1 cut(s) 425
HinP1I GCGC 1 cut(s) 425
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 4 cut(s) 11, 65, 168, 562
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 2 cut(s) 284, 311
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 3 cut(s) 39, 70, 164
Hpy188III TCNNGA 2 cut(s) 83, 440
Hpy8I GTNNAC 1 cut(s) 391
HpyAV CCTTC 1 cut(s) 372
HpyCH4III ACNGT 2 cut(s) 119, 455
HpyCH4IV ACGT 1 cut(s) 490
HpyCH4V TGCA 5 cut(s) 18, 335, 451, 514, 643
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 677
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 490
Hsp92II CATG 6 cut(s) 18, 22, 86, 376, 518, 766
HspAI GCGC 1 cut(s) 425
Ksp22I TGATCA 1 cut(s) 520
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 5 cut(s) 57, 466, 475, 520, 661
LweI GCATC 3 cut(s) 165, 322, 619
MaeI CTAG 2 cut(s) 317, 773
MaeII ACGT 1 cut(s) 490
MaeIII GTNAC 2 cut(s) 121, 169
MalI GATC 5 cut(s) 59, 468, 477, 522, 663
MboI GATC 5 cut(s) 57, 466, 475, 520, 661
MboII GAAGA 5 cut(s) 127, 172, 350, 587, 592
MhlI GDGCHC 1 cut(s) 487
MluCI AATT 4 cut(s) 131, 295, 325, 543
MlyI GAGTC 2 cut(s) 20, 177
MnlI CCTC 9 cut(s) 35, 90, 137, 158, 202, 300, 366, 431, 718
Mph1103I ATGCAT 1 cut(s) 20
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 4 cut(s) 222, 390, 408, 570
MslI CAYNNNNRTG 1 cut(s) 528
MspI CCGG 2 cut(s) 284, 311
MspR9I CCNGG 2 cut(s) 53, 284
MvaI CCWGG 1 cut(s) 53
MvnI CGCG 2 cut(s) 425, 427
MwoI GCNNNNNNNGC 2 cut(s) 431, 677
NciI CCSGG 1 cut(s) 284
NcoI CCATGG 1 cut(s) 372
NdeI CATATG 1 cut(s) 639
NdeII GATC 5 cut(s) 57, 466, 475, 520, 661
NlaIII CATG 6 cut(s) 18, 22, 86, 376, 518, 766
NlaIV GGNNCC 1 cut(s) 418
NmuCI GTSAC 1 cut(s) 169
NsiI ATGCAT 1 cut(s) 20
NspI RCATGY 1 cut(s) 766
PagI TCATGA 1 cut(s) 82
PciI ACATGT 1 cut(s) 762
PdmI GAANNNNTTC 1 cut(s) 357
PfeI GAWTC 2 cut(s) 65, 562
PkrI GCNGC 1 cut(s) 429
PleI GAGTC 2 cut(s) 19, 176
PpsI GAGTC 2 cut(s) 19, 176
PscI ACATGT 1 cut(s) 762
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 418
PspPI GGNCC 1 cut(s) 22
RsaI GTAC 2 cut(s) 116, 651
RsaNI GTAC 2 cut(s) 115, 650
RseI CAYNNNNRTG 1 cut(s) 528
SaqAI TTAA 4 cut(s) 222, 390, 408, 570
SatI GCNGC 1 cut(s) 428
Sau3AI GATC 5 cut(s) 57, 466, 475, 520, 661
Sau96I GGNCC 1 cut(s) 22
SchI GAGTC 2 cut(s) 20, 177
ScrFI CCNGG 2 cut(s) 53, 284
SduI GDGCHC 1 cut(s) 487
SetI ASST 4 cut(s) 340, 358, 493, 741
SfaNI GCATC 3 cut(s) 165, 322, 619
SinI GGWCC 1 cut(s) 22
SmiMI CAYNNNNRTG 1 cut(s) 528
SmlI CTYRAG 2 cut(s) 196, 722
SmoI CTYRAG 2 cut(s) 196, 722
Sse9I AATT 4 cut(s) 131, 295, 325, 543
SsiI CCGC 4 cut(s) 148, 427, 587, 682
SspMI CTAG 2 cut(s) 317, 773
StyD4I CCNGG 2 cut(s) 51, 282
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 2 cut(s) 119, 455
TaiI ACGT 1 cut(s) 493
TaqI TCGA 1 cut(s) 351
TasI AATT 4 cut(s) 131, 295, 325, 543
TatI WGTACW 1 cut(s) 649
TauI GCSGC 1 cut(s) 430
TfiI GAWTC 2 cut(s) 65, 562
Tru1I TTAA 4 cut(s) 222, 390, 408, 570
Tru9I TTAA 4 cut(s) 222, 390, 408, 570
TscAI CASTG 2 cut(s) 458, 720
TseFI GTSAC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 2 cut(s) 201, 356
TspRI CASTG 2 cut(s) 458, 720
VpaK11BI GGWCC 1 cut(s) 22
XapI RAATTY 1 cut(s) 131
XceI RCATGY 1 cut(s) 766
XmnI GAANNNNTTC 1 cut(s) 357
XspI CTAG 2 cut(s) 317, 773
Zsp2I ATGCAT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.