Rroxscaffold_4G00292520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000612
Physical Location & Seq
Reverse (-)
12800223 .. 12801304
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00292520.1

Sequence Viewer

Length: 972 bp
ATGGCCTTCTTTGCCTATCCCTGTGATAATGTCCCCCCCGTCTCACAAGAAGAGTTCAGCTTGTTTCACACCATCGACCGCAAGCTCTTCACGCGATTGGTCTTCGGCCTCGGCCGTGACCCCGCCGAGTCGGCCCAAGTCATGGCGCTGTGGATGTGGTTGGAGCACAATGGAAAGGAGTTTAACTTGGTTTACAAGACACTGATGACTCTACCCAACACGCTTCTCAATGCCATGGCCGAGGAGTCCGTTTTGGCTTTGAAGTGCATTCAGAGCGATGACTTCCCTCGTCCTAACCTTGACATCACTACTGATATTCCTCTGCTCCAAGCAATTAGCAAAAGTGGTGTCACCCTTAAATTCTTCCATGATAATCGAATAGGGATCATGCGAGGCGTCTCTGCACTGTTCAAAGACATTTGCTTGAAAGCGTTTCAGGACTTGTTGCTTCATCCTCACCAAGAGAGAAGAGCCGATGCTAATGTGTACAATCCAACAATGGGTGCTATTGCTCCACAGGTTTGGAACCCGGCAATCAGTGGTGCAAGTCTTCGGAATTTGGGTGGCCGTTTTGATCCTTATGACCTTTCAGTTCAGCGCGAGATTTTGAACAAGGAAATGGAGGAGGTTTTGAGCCGTTTGACTTTGAATGACGATGAAGATGATGGCCGTGGTGAAGATCAAGAAGTTGAGCCCCATGAGAGGACTATTTTCTTGACATTTTCTAAAGGGTACCCCATTTCTGAAAATGAAATAAGAGAATTTATCACTAAAAAATTTGGGGATGTTATTGAAGCGATCTATATGCAAGAAGTCCTTTCTCAGCAACCATTGTATGCCCGGCTTGTGGTTCGTTCTGCTTCCTCCATTCCAGTGGTTCTTGAGGGCCAAAACAAGGCCAAATTCACCATTAAAGGCAAGCATGTTTGGGCGAGGAAATATGTGCACAAGACTCAAACAACTTCACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

323

Amino Acids

36.76

Weight (kDa)

5.81

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 732
AccB1I GGYRCC 1 cut(s) 732
AccB7I CCANNNNNTGG 1 cut(s) 142
AccII CGCG 2 cut(s) 94, 600
AciI CCGC 2 cut(s) 79, 123
AclWI GGATC 2 cut(s) 392, 569
AcoI YGGCCR 4 cut(s) 112, 237, 565, 667
AcsI RAATTY 5 cut(s) 359, 556, 761, 776, 902
AcyI GRCGYC 1 cut(s) 396
AfaI GTAC 2 cut(s) 488, 734
AfiI CCNNNNNNNGG 5 cut(s) 142, 500, 702, 847, 895
AgsI TTSAA 6 cut(s) 262, 412, 427, 610, 649, 794
AluBI AGCT 2 cut(s) 60, 85
AluI AGCT 2 cut(s) 60, 85
Alw21I GWGCWC 2 cut(s) 168, 948
Alw26I GTCTC 2 cut(s) 46, 403
Alw44I GTGCAC 1 cut(s) 944
AlwI GGATC 2 cut(s) 392, 569
AoxI GGCC 9 cut(s) 3, 106, 112, 132, 237, 565, 667, 886, 897
ApaLI GTGCAC 1 cut(s) 944
ApoI RAATTY 5 cut(s) 359, 556, 761, 776, 902
ArsI GACNNNNNNTTYG 2 cut(s) 333, 365
Asp718I GGTACC 1 cut(s) 732
AspLEI GCGC 2 cut(s) 148, 600
AspS9I GGNCC 2 cut(s) 133, 886
AsuC2I CCSGG 2 cut(s) 530, 841
AsuHPI GGTGA 5 cut(s) 343, 449, 686, 898, 957
BaeGI GKGCMC 1 cut(s) 948
BanI GGYRCC 1 cut(s) 732
BanII GRGCYC 1 cut(s) 696
BbsI GAAGAC 2 cut(s) 94, 542
Bbv12I GWGCWC 2 cut(s) 168, 948
BccI CCATC 2 cut(s) 80, 659
BceAI ACGGC 4 cut(s) 99, 552, 621, 654
BcgI CGANNNNNNTGC 2 cut(s) 787, 821
BcnI CCSGG 2 cut(s) 530, 841
BcoDI GTCTC 2 cut(s) 46, 403
BfoI RGCGCY 1 cut(s) 149
BglI GCCNNNNNGGC 1 cut(s) 131
Bme1390I CCNGG 2 cut(s) 530, 841
BmgT120I GGNCC 2 cut(s) 133, 886
BmiI GGNNCC 2 cut(s) 527, 734
BmrFI CCNGG 2 cut(s) 530, 841
BmsI GCATC 1 cut(s) 466
BpiI GAAGAC 2 cut(s) 94, 542
BpuEI CTTGAG 1 cut(s) 902
BpuMI CCSGG 2 cut(s) 530, 841
BsaHI GRCGYC 1 cut(s) 396
BsaJI CCNNGG 4 cut(s) 109, 234, 240, 670
Bsc4I CCNNNNNNNGG 5 cut(s) 142, 500, 702, 847, 895
Bse1I ACTGG 1 cut(s) 872
BseDI CCNNGG 4 cut(s) 109, 234, 240, 670
BseGI GGATG 3 cut(s) 159, 451, 790
BseLI CCNNNNNNNGG 5 cut(s) 142, 500, 702, 847, 895
BseMII CTCAG 1 cut(s) 836
BseNI ACTGG 1 cut(s) 872
BseRI GAGGAG 2 cut(s) 257, 638
BseSI GKGCMC 1 cut(s) 948
BseX3I CGGCCG 1 cut(s) 112
BsgI GTGCAG 1 cut(s) 387
Bsh1236I CGCG 2 cut(s) 94, 600
Bsh1285I CGRYCG 2 cut(s) 79, 115
BshFI GGCC 9 cut(s) 5, 108, 114, 134, 239, 567, 669, 888, 899
BshNI GGYRCC 1 cut(s) 732
BsiEI CGRYCG 2 cut(s) 79, 115
BsiHKAI GWGCWC 2 cut(s) 168, 948
BsiSI CCGG 2 cut(s) 530, 841
BslFI GGGAC 1 cut(s) 17
BslI CCNNNNNNNGG 5 cut(s) 142, 500, 702, 847, 895
BsmAI GTCTC 2 cut(s) 46, 403
BsmBI CGTCTC 2 cut(s) 46, 403
BsmFI GGGAC 1 cut(s) 17
BsmI GAATGC 1 cut(s) 267
BsnI GGCC 9 cut(s) 5, 108, 114, 134, 239, 567, 669, 888, 899
Bsp1286I GDGCHC 3 cut(s) 168, 696, 948
Bsp1407I TGTACA 1 cut(s) 486
Bsp143I GATC 4 cut(s) 384, 574, 679, 798
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 2 cut(s) 79, 123
BspANI GGCC 9 cut(s) 5, 108, 114, 134, 239, 567, 669, 888, 899
BspCNI CTCAG 1 cut(s) 835
BspFNI CGCG 2 cut(s) 94, 600
BspLI GGNNCC 2 cut(s) 527, 734
BspPI GGATC 2 cut(s) 392, 569
BspQI GCTCTTC 2 cut(s) 92, 463
BspT107I GGYRCC 1 cut(s) 732
BsrGI TGTACA 1 cut(s) 486
BsrI ACTGG 1 cut(s) 872
BssECI CCNNGG 4 cut(s) 109, 234, 240, 670
BssMI GATC 4 cut(s) 384, 574, 679, 798
BssNI GRCGYC 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 408
Bst6I CTCTTC 3 cut(s) 45, 92, 463
BstACI GRCGYC 1 cut(s) 396
BstAUI TGTACA 1 cut(s) 486
BstC8I GCNNGC 2 cut(s) 83, 920
BstDEI CTNAG 1 cut(s) 822
BstDSI CCRYGG 2 cut(s) 234, 670
BstF5I GGATG 3 cut(s) 159, 451, 790
BstFNI CGCG 2 cut(s) 94, 600
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 2 cut(s) 148, 600
BstKTI GATC 4 cut(s) 387, 577, 682, 801
BstMAI GTCTC 2 cut(s) 46, 403
BstMBI GATC 4 cut(s) 384, 574, 679, 798
BstMCI CGRYCG 2 cut(s) 79, 115
BstMWI GCNNNNNNNGC 4 cut(s) 11, 91, 131, 273
BstNSI RCATGY 1 cut(s) 926
BstSCI CCNGG 2 cut(s) 528, 839
BstSLI GKGCMC 1 cut(s) 948
BstUI CGCG 2 cut(s) 94, 600
BstV2I GAAGAC 2 cut(s) 94, 542
BstXI CCANNNNNNTGG 2 cut(s) 522, 874
BstZI CGGCCG 1 cut(s) 112
BsuRI GGCC 9 cut(s) 5, 108, 114, 134, 239, 567, 669, 888, 899
BtgI CCRYGG 2 cut(s) 234, 670
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 3 cut(s) 159, 451, 790
BtsIMutI CAGTG 4 cut(s) 200, 404, 544, 879
Cac8I GCNNGC 2 cut(s) 83, 920
CfoI GCGC 2 cut(s) 148, 600
Cfr13I GGNCC 2 cut(s) 133, 886
CseI GACGC 1 cut(s) 385
Csp6I GTAC 2 cut(s) 487, 733
CviAII CATG 6 cut(s) 142, 235, 368, 388, 698, 923
CviQI GTAC 2 cut(s) 487, 733
DdeI CTNAG 1 cut(s) 822
DpnI GATC 4 cut(s) 386, 576, 681, 800
DpnII GATC 4 cut(s) 384, 574, 679, 798
EaeI YGGCCR 4 cut(s) 112, 237, 565, 667
EagI CGGCCG 1 cut(s) 112
Eam1104I CTCTTC 3 cut(s) 45, 92, 463
EarI CTCTTC 3 cut(s) 45, 92, 463
EclXI CGGCCG 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 696
Eco52I CGGCCG 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 696
ErhI CCWWGG 1 cut(s) 234
Esp3I CGTCTC 2 cut(s) 46, 403
FaeI CATG 6 cut(s) 145, 238, 371, 391, 701, 926
FalI AAGNNNNNCTT 2 cut(s) 801, 833
FaqI GGGAC 1 cut(s) 17
FatI CATG 6 cut(s) 141, 234, 367, 387, 697, 922
FauI CCCGC 1 cut(s) 130
FokI GGATG 3 cut(s) 166, 438, 797
FriOI GRGCYC 1 cut(s) 696
GlaI GCGC 2 cut(s) 147, 599
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 9 cut(s) 5, 108, 114, 134, 239, 567, 669, 888, 899
HapII CCGG 2 cut(s) 530, 841
HgaI GACGC 1 cut(s) 385
HhaI GCGC 2 cut(s) 148, 600
Hin1I GRCGYC 1 cut(s) 396
Hin1II CATG 6 cut(s) 145, 238, 371, 391, 701, 926
Hin6I GCGC 2 cut(s) 146, 598
HinP1I GCGC 2 cut(s) 146, 598
HinfI GANTC 4 cut(s) 128, 208, 245, 952
HpaII CCGG 2 cut(s) 530, 841
HphI GGTGA 5 cut(s) 343, 449, 686, 898, 957
Hpy166II GTNNAC 3 cut(s) 193, 487, 946
Hpy188I TCNGA 3 cut(s) 273, 555, 745
Hpy188III TCNNGA 4 cut(s) 437, 683, 715, 881
Hpy8I GTNNAC 3 cut(s) 193, 487, 946
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 1 cut(s) 408
HpyCH4V TGCA 5 cut(s) 267, 404, 545, 808, 946
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 91, 131, 273
HpyF3I CTNAG 1 cut(s) 822
Hsp92I GRCGYC 1 cut(s) 396
Hsp92II CATG 6 cut(s) 145, 238, 371, 391, 701, 926
HspAI GCGC 2 cut(s) 146, 598
KpnI GGTACC 1 cut(s) 736
Kzo9I GATC 4 cut(s) 384, 574, 679, 798
LguI GCTCTTC 2 cut(s) 92, 463
LmnI GCTCC 3 cut(s) 163, 330, 517
LpnPI CCDG 6 cut(s) 34, 422, 503, 543, 854, 885
LweI GCATC 1 cut(s) 466
MaeIII GTNAC 2 cut(s) 116, 349
MalI GATC 4 cut(s) 386, 576, 681, 800
MboI GATC 4 cut(s) 384, 574, 679, 798
MboII GAAGA 8 cut(s) 62, 79, 94, 355, 480, 542, 671, 689
MhlI GDGCHC 3 cut(s) 168, 696, 948
MluCI AATT 6 cut(s) 333, 359, 556, 761, 776, 902
MlyI GAGTC 4 cut(s) 137, 202, 254, 946
MmeI TCCRAC 2 cut(s) 141, 518
MseI TTAA 3 cut(s) 183, 357, 912
MslI CAYNNNNRTG 1 cut(s) 872
MspI CCGG 2 cut(s) 530, 841
MspR9I CCNGG 2 cut(s) 530, 841
Mva1269I GAATGC 1 cut(s) 267
MvnI CGCG 2 cut(s) 94, 600
MwoI GCNNNNNNNGC 4 cut(s) 11, 91, 131, 273
NciI CCSGG 2 cut(s) 530, 841
NcoI CCATGG 1 cut(s) 234
NdeII GATC 4 cut(s) 384, 574, 679, 798
NlaIII CATG 6 cut(s) 145, 238, 371, 391, 701, 926
NlaIV GGNNCC 2 cut(s) 527, 734
NmeAIII GCCGAG 3 cut(s) 90, 151, 265
NmuCI GTSAC 2 cut(s) 116, 349
NspI RCATGY 1 cut(s) 926
PciSI GCTCTTC 2 cut(s) 92, 463
PctI GAATGC 1 cut(s) 267
PflMI CCANNNNNTGG 1 cut(s) 142
PleI GAGTC 4 cut(s) 136, 202, 253, 946
PpsI GAGTC 4 cut(s) 136, 202, 253, 946
PspN4I GGNNCC 2 cut(s) 527, 734
PspPI GGNCC 2 cut(s) 133, 886
RsaI GTAC 2 cut(s) 488, 734
RsaNI GTAC 2 cut(s) 487, 733
RseI CAYNNNNRTG 1 cut(s) 872
SapI GCTCTTC 2 cut(s) 92, 463
SaqAI TTAA 3 cut(s) 183, 357, 912
Sau3AI GATC 4 cut(s) 384, 574, 679, 798
Sau96I GGNCC 2 cut(s) 133, 886
SchI GAGTC 4 cut(s) 137, 202, 254, 946
ScrFI CCNGG 2 cut(s) 530, 841
SduI GDGCHC 3 cut(s) 168, 696, 948
SetI ASST 6 cut(s) 62, 87, 300, 522, 588, 630
SfaNI GCATC 1 cut(s) 466
SmiMI CAYNNNNRTG 1 cut(s) 872
SmlI CTYRAG 1 cut(s) 881
SmoI CTYRAG 1 cut(s) 881
Sse9I AATT 6 cut(s) 333, 359, 556, 761, 776, 902
SsiI CCGC 2 cut(s) 79, 123
StyD4I CCNGG 2 cut(s) 528, 839
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 408
TaqI TCGA 2 cut(s) 75, 376
TasI AATT 6 cut(s) 333, 359, 556, 761, 776, 902
TatI WGTACW 1 cut(s) 486
Tru1I TTAA 3 cut(s) 183, 357, 912
Tru9I TTAA 3 cut(s) 183, 357, 912
TscAI CASTG 4 cut(s) 207, 411, 544, 879
TseFI GTSAC 2 cut(s) 116, 349
Tsp45I GTSAC 2 cut(s) 116, 349
TspDTI ATGAA 3 cut(s) 440, 672, 765
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 4 cut(s) 207, 411, 544, 879
Van91I CCANNNNNTGG 1 cut(s) 142
VneI GTGCAC 1 cut(s) 944
XapI RAATTY 5 cut(s) 359, 556, 761, 776, 902
XceI RCATGY 1 cut(s) 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.