RchiOBHm_Chr5g0048921

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000612
Physical Location & Seq
Forward (+)
46248950 .. 46249618
669 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32660

Sequence Viewer

Length: 432 bp
ATGGATGGGGCTGTTGTTAACAGTAATAGTAGTGTTGATCCACTAATATGGGACCCTCGTGTGGCGGCTAAGGCAGTGTCTGTGGGGCGGTGGTGTTCGGGGGATCAAGTCGAGGAAGAAGTGTCTGCAGATGATAGGACAATTTTCTTGACATTTTCTAAGGGGTATCCCATTTCTGAAAAGGAAGTGAGAGAGTTCTTTACCAGGAAATATGGGGAATTTTTTGATGCTATCCATATGCAAGAAGTACAAGTAGTGGATCAGCAGCCTTTATATGCCCGCCTTGTGGTTCGTTCCGCTTCTTTTATTCCAGTGGTGCTCGAGGGACAAAGCAAGGCCAAATTTTCTATCAATGGAAAACATGTTTGGGCAAGAAAGTACGTGAAAAAGAATATTGTGATAGGAGAACAAAGTTCACCAAAGGTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.14

Weight (kDa)

7.83

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 65, 88, 280, 297
AclWI GGATC 3 cut(s) 32, 111, 267
AcsI RAATTY 2 cut(s) 218, 341
AfaI GTAC 2 cut(s) 249, 380
AfiI CCNNNNNNNGG 2 cut(s) 61, 286
AflIII ACRYGT 1 cut(s) 361
AjnI CCWGG 1 cut(s) 203
AjuI GAANNNNNNNTTGG 2 cut(s) 349, 381
Alw21I GWGCWC 1 cut(s) 321
AlwI GGATC 3 cut(s) 32, 111, 267
AlwNI CAGNNNCTG 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 1 cut(s) 336
ApeKI GCWGC 1 cut(s) 265
ApoI RAATTY 2 cut(s) 218, 341
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 408
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 1 cut(s) 52
BauI CACGAG 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 277
BciT130I CCWGG 1 cut(s) 205
BciVI GTATCC 1 cut(s) 177
BfmI CTRYAG 1 cut(s) 126
BfuI GTATCC 1 cut(s) 177
BisI GCNGC 2 cut(s) 66, 266
BlsI GCNGC 2 cut(s) 67, 267
Bme1390I CCNGG 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 52
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 2 cut(s) 53, 54
BmrFI CCNGG 1 cut(s) 205
BmsI GCATC 1 cut(s) 217
Bpu10I CCTNAGC 1 cut(s) 69
BsaAI YACGTR 1 cut(s) 382
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 286
Bse1I ACTGG 1 cut(s) 311
BseBI CCWGG 1 cut(s) 205
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 61, 286
BseNI ACTGG 1 cut(s) 311
BseXI GCAGC 1 cut(s) 277
BshFI GGCC 1 cut(s) 338
BsiHKAI GWGCWC 1 cut(s) 321
BsiHKCI CYCGRG 1 cut(s) 320
BslFI GGGAC 2 cut(s) 65, 339
BslI CCNNNNNNNGG 2 cut(s) 61, 286
BsmFI GGGAC 2 cut(s) 65, 339
BsnI GGCC 1 cut(s) 338
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 3 cut(s) 37, 103, 259
BspACI CCGC 4 cut(s) 65, 88, 280, 297
BspANI GGCC 1 cut(s) 338
BspLI GGNNCC 2 cut(s) 53, 54
BspMAI CTGCAG 1 cut(s) 130
BspPI GGATC 3 cut(s) 32, 111, 267
BsrI ACTGG 1 cut(s) 311
BssMI GATC 3 cut(s) 37, 103, 259
BssSI CACGAG 1 cut(s) 57
Bst2BI CACGAG 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 23
BstBAI YACGTR 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 280
BstDEI CTNAG 2 cut(s) 69, 159
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 40, 106, 262
BstMBI GATC 3 cut(s) 37, 103, 259
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 1 cut(s) 205
BstNSI RCATGY 1 cut(s) 365
BstSCI CCNGG 1 cut(s) 203
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 277
BstXI CCANNNNNNTGG 1 cut(s) 48
BsuI GTATCC 1 cut(s) 177
BsuRI GGCC 1 cut(s) 338
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 2 cut(s) 81, 318
Cac8I GCNNGC 1 cut(s) 280
CaiI CAGNNNCTG 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 52
Csp6I GTAC 2 cut(s) 248, 379
CviAII CATG 1 cut(s) 362
CviJI RGCY 4 cut(s) 11, 68, 268, 338
CviKI_1 RGCY 4 cut(s) 11, 68, 268, 338
CviQI GTAC 2 cut(s) 248, 379
DdeI CTNAG 2 cut(s) 69, 159
DpnI GATC 3 cut(s) 39, 105, 261
DpnII GATC 3 cut(s) 37, 103, 259
Eco47I GGWCC 1 cut(s) 52
Eco88I CYCGRG 1 cut(s) 320
EcoO109I RGGNCCY 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 203
FaeI CATG 1 cut(s) 365
FaiI YATR 7 cut(s) 49, 213, 237, 239, 274, 276, 363
FaqI GGGAC 2 cut(s) 65, 339
FatI CATG 1 cut(s) 361
FauI CCCGC 1 cut(s) 287
FauNDI CATATG 1 cut(s) 237
Fnu4HI GCNGC 2 cut(s) 66, 266
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 66, 266
GluI GCNGC 2 cut(s) 66, 266
HaeIII GGCC 1 cut(s) 338
Hin1II CATG 1 cut(s) 365
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HpaI GTTAAC 1 cut(s) 19
HphI GGTGA 1 cut(s) 408
Hpy166II GTNNAC 2 cut(s) 19, 416
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 1 cut(s) 148
Hpy8I GTNNAC 2 cut(s) 19, 416
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 2 cut(s) 128, 241
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 2 cut(s) 69, 159
HpySE526I ACGT 1 cut(s) 381
Hsp92II CATG 1 cut(s) 365
KflI GGGWCCC 1 cut(s) 52
KspAI GTTAAC 1 cut(s) 19
Kzo9I GATC 3 cut(s) 37, 103, 259
LpnPI CCDG 3 cut(s) 190, 217, 324
Lsp1109I GCAGC 1 cut(s) 277
LweI GCATC 1 cut(s) 217
MaeII ACGT 1 cut(s) 381
MalI GATC 3 cut(s) 39, 105, 261
MboI GATC 3 cut(s) 37, 103, 259
MboII GAAGA 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 3 cut(s) 141, 218, 341
MnlI CCTC 3 cut(s) 66, 106, 316
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 46
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeI CATATG 1 cut(s) 237
NdeII GATC 3 cut(s) 37, 103, 259
NlaIII CATG 1 cut(s) 365
NlaIV GGNNCC 2 cut(s) 53, 54
NspI RCATGY 1 cut(s) 365
PaeR7I CTCGAG 1 cut(s) 320
PciI ACATGT 1 cut(s) 361
PkrI GCNGC 2 cut(s) 67, 267
Ppu21I YACGTR 1 cut(s) 382
PpuMI RGGWCCY 1 cut(s) 52
PscI ACATGT 1 cut(s) 361
Psp5II RGGWCCY 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 203
PspGI CCWGG 1 cut(s) 203
PspN4I GGNNCC 2 cut(s) 53, 54
PspPI GGNCC 1 cut(s) 52
PspPPI RGGWCCY 1 cut(s) 52
PspXI VCTCGAGB 1 cut(s) 320
PstI CTGCAG 1 cut(s) 130
PstNI CAGNNNCTG 1 cut(s) 80
RsaI GTAC 2 cut(s) 249, 380
RsaNI GTAC 2 cut(s) 248, 379
RseI CAYNNNNRTG 1 cut(s) 46
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 2 cut(s) 66, 266
Sau3AI GATC 3 cut(s) 37, 103, 259
Sau96I GGNCC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 205
SduI GDGCHC 1 cut(s) 321
SetI ASST 2 cut(s) 384, 426
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 126
Sfr274I CTCGAG 1 cut(s) 320
SinI GGWCC 1 cut(s) 52
SlaI CTCGAG 1 cut(s) 320
SmiMI CAYNNNNRTG 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 3 cut(s) 141, 218, 341
SsiI CCGC 4 cut(s) 65, 88, 280, 297
SspI AATATT 1 cut(s) 394
StyD4I CCNGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 23
TaiI ACGT 1 cut(s) 384
TaqI TCGA 2 cut(s) 111, 321
TasI AATT 3 cut(s) 141, 218, 341
TatI WGTACW 1 cut(s) 247
TauI GCSGC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 2 cut(s) 81, 318
TseI GCWGC 1 cut(s) 265
TspRI CASTG 2 cut(s) 81, 318
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 2 cut(s) 218, 341
XceI RCATGY 1 cut(s) 365
XhoI CTCGAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.