RLG00000034558

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
44950511 .. 44951823
1313 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034558

Sequence Viewer

Length: 1230 bp
ATGGCTTCCTCTTCCTCTTCTTTGTCCCCATTGGAAGTCCGAATCACCAAAGAACAGTTCTACTCTTTCCACAACATTGACCGCAAGCTCTTCACCCGTCTTACATTGCATCTAGGCCGTGACCCAGGCGAGTCTGCTCAGATTATGGCCTTTTGGATGTGGCTCGAGCACGGTGGTAAGGTCACCCACTTCATTCACAAAGCCCTTAACACTCTCCCCAACACCCTCCTCCACATCATGGCCGACGAGTCATGCATGGTCCTCAATGTCATTCAAAATGATGAATTTCCGATGGTCTTGGAATCAGATATCATTCCTCACGATATTCCCATTCTCCAAGGAATGACCAAAAGCGGCGTCACCCTCAGATTCTTCCATAAAAACCGCCTCAGCATCATCCAAGGACTTACCTTGTTTTTCAATGACGTGTGCTTGAGAGCCTTTGAGGACTTGTACATTACCGCTGCTCACTGCCAAAACAAGACTATAGATCCTATATCCGCTGGAATAGGATTACACCCAGAGCCGCAAAATTATGTAAGGAGGATAGTTCTAGTCAATAAGTACTACAATCCATTTCTCATTGGAGCTGCGACTTTTGACGCACCTATGGAAACCATAGAACCTCTTCCTCCGCACCCCATGGATGGGGCTATTTTTAACAGTAATAGTAGTGTTGATCCACTAATATGGGACCCACGTGTGGCGGCTAAGGCGGTGTTTGTGGGGTCTGCTCAGTCTCCTTCGGAGAATTTGAGCCATGGTTATGTTGATCCCTATGATCTTAGCGCTCAGCGCGATTTCTTGAATAATGAAATGGCGGATATGCTGAGCCGTTTGCATTTGCATGACGATGATGGTGATGGTGGTGATATAGGCTATGGTGTTCGGGTGGATCAAGTCAAGGAAGAAGTGTCTGCAGATGATAGGACTATTTTCTTGACATTTTCTAAGGGATATCCCATTTCTGAAAAGGAAGTGAGAGAGTTCTTCACTAGGAAATATGGGGAATTTTTTGATGCTATCCATATGCAAGAAGTACAGGTAGAGGATCAGCAGCCTTTATATGCCCGCCTTGTGGTTCGTTCCGCATCTTTTATTCCAGTGGTGCTCGGGGGACAAAGCAAGGCCAAATTTTCTATCAATGGAAAACATGTTTGGGCAAGAAAGTATGTGAAAAAGAATGTGATAGGAGAACAAAGTTCACCAAAGGGTGTTTTAGCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

410

Amino Acids

46.06

Weight (kDa)

5.88

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000612)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 238
AccII CGCG 1 cut(s) 798
AclWI GGATC 5 cut(s) 485, 674, 767, 903, 1059
AcoI YGGCCR 1 cut(s) 240
AcsI RAATTY 4 cut(s) 284, 751, 1010, 1133
AcvI CACGTG 1 cut(s) 701
AcyI GRCGYC 1 cut(s) 357
AfaI GTAC 3 cut(s) 455, 566, 1041
AfeI AGCGCT 1 cut(s) 790
AfiI CCNNNNNNNGG 5 cut(s) 238, 647, 648, 703, 1078
AflIII ACRYGT 3 cut(s) 426, 700, 1153
AgsI TTSAA 3 cut(s) 275, 421, 808
AjiI CACGTC 1 cut(s) 427
AjnI CCWGG 1 cut(s) 124
AjuI GAANNNNNNNTTGG 4 cut(s) 41, 73, 1141, 1173
AluBI AGCT 3 cut(s) 88, 590, 1223
AluI AGCT 3 cut(s) 88, 590, 1223
Alw21I GWGCWC 2 cut(s) 171, 1113
Alw26I GTCTC 1 cut(s) 744
AlwI GGATC 5 cut(s) 485, 674, 767, 903, 1059
Ama87I CYCGRG 2 cut(s) 164, 1112
Aor51HI AGCGCT 1 cut(s) 790
AoxI GGCC 4 cut(s) 115, 147, 240, 1128
ApeKI GCWGC 3 cut(s) 464, 590, 1057
ApoI RAATTY 4 cut(s) 284, 751, 1010, 1133
ArsI GACNNNNNNTTYG 2 cut(s) 342, 374
Asp700I GAANNNNTTC 1 cut(s) 627
AspLEI GCGC 2 cut(s) 791, 798
AspS9I GGNCC 2 cut(s) 259, 694
AsuHPI GGTGA 7 cut(s) 37, 85, 175, 352, 872, 881, 1197
AvaI CYCGRG 2 cut(s) 164, 1112
AvaII GGWCC 2 cut(s) 259, 694
BbrPI CACGTG 1 cut(s) 701
Bbv12I GWGCWC 2 cut(s) 171, 1113
BbvCI CCTCAGC 1 cut(s) 389
BbvI GCAGC 3 cut(s) 451, 577, 1069
BccI CCATC 4 cut(s) 286, 641, 851, 857
BceAI ACGGC 2 cut(s) 102, 819
BciT130I CCWGG 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 744
BfaI CTAG 3 cut(s) 113, 554, 996
BfmI CTRYAG 2 cut(s) 486, 918
BfoI RGCGCY 1 cut(s) 792
BisI GCNGC 6 cut(s) 355, 465, 527, 591, 708, 1058
BlpI GCTNAGC 2 cut(s) 792, 830
BlsI GCNGC 6 cut(s) 356, 466, 528, 592, 709, 1059
BmcAI AGTACT 1 cut(s) 566
Bme1390I CCNGG 1 cut(s) 126
Bme18I GGWCC 2 cut(s) 259, 694
BmeT110I CYCGRG 2 cut(s) 164, 1112
BmgBI CACGTC 1 cut(s) 427
BmgT120I GGNCC 2 cut(s) 259, 694
BmiI GGNNCC 2 cut(s) 695, 696
BmrFI CCNGG 1 cut(s) 126
BmsI GCATC 4 cut(s) 118, 402, 1009, 1100
Bpu10I CCTNAGC 2 cut(s) 389, 711
Bpu1102I GCTNAGC 2 cut(s) 792, 830
BpuEI CTTGAG 1 cut(s) 454
BsaAI YACGTR 1 cut(s) 701
BsaHI GRCGYC 1 cut(s) 357
BsaJI CCNNGG 5 cut(s) 124, 337, 400, 642, 760
Bsc4I CCNNNNNNNGG 5 cut(s) 238, 647, 648, 703, 1078
Bse1I ACTGG 1 cut(s) 1103
Bse3DI GCAATG 1 cut(s) 104
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 5 cut(s) 124, 337, 400, 642, 760
BseGI GGATG 3 cut(s) 162, 396, 652
BseLI CCNNNNNNNGG 5 cut(s) 238, 647, 648, 703, 1078
BseMI GCAATG 1 cut(s) 104
BseMII CTCAG 6 cut(s) 152, 379, 403, 749, 806, 821
BseNI ACTGG 1 cut(s) 1103
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 3 cut(s) 451, 577, 1069
Bsh1236I CGCG 1 cut(s) 798
BshFI GGCC 4 cut(s) 117, 149, 242, 1130
BsiHKAI GWGCWC 2 cut(s) 171, 1113
BsiHKCI CYCGRG 2 cut(s) 164, 1112
BslFI GGGAC 3 cut(s) 10, 707, 1131
BslI CCNNNNNNNGG 5 cut(s) 238, 647, 648, 703, 1078
BsmAI GTCTC 1 cut(s) 744
BsmFI GGGAC 3 cut(s) 10, 707, 1131
BsnI GGCC 4 cut(s) 117, 149, 242, 1130
BsoBI CYCGRG 2 cut(s) 164, 1112
Bsp1286I GDGCHC 2 cut(s) 171, 1113
Bsp1407I TGTACA 1 cut(s) 453
Bsp143I GATC 6 cut(s) 490, 679, 772, 781, 895, 1051
Bsp1720I GCTNAGC 2 cut(s) 792, 830
Bsp19I CCATGG 2 cut(s) 642, 760
BspANI GGCC 4 cut(s) 117, 149, 242, 1130
BspCNI CTCAG 6 cut(s) 151, 378, 402, 748, 805, 822
BspFNI CGCG 1 cut(s) 798
BspLI GGNNCC 2 cut(s) 695, 696
BspMAI CTGCAG 1 cut(s) 922
BspPI GGATC 5 cut(s) 485, 674, 767, 903, 1059
BspQI GCTCTTC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 104
BsrGI TGTACA 1 cut(s) 453
BsrI ACTGG 1 cut(s) 1103
BssECI CCNNGG 5 cut(s) 124, 337, 400, 642, 760
BssMI GATC 6 cut(s) 490, 679, 772, 781, 895, 1051
BssNI GRCGYC 1 cut(s) 357
BssT1I CCWWGG 4 cut(s) 337, 400, 642, 760
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 3 cut(s) 57, 173, 665
Bst6I CTCTTC 4 cut(s) 16, 22, 95, 633
BstACI GRCGYC 1 cut(s) 357
BstAUI TGTACA 1 cut(s) 453
BstBAI YACGTR 1 cut(s) 701
BstC8I GCNNGC 2 cut(s) 86, 1072
BstDEI CTNAG 9 cut(s) 138, 365, 389, 711, 735, 785, 792, 830, 951
BstDSI CCRYGG 2 cut(s) 642, 760
BstEII GGTNACC 1 cut(s) 181
BstF5I GGATG 3 cut(s) 162, 396, 652
BstFNI CGCG 1 cut(s) 798
BstH2I RGCGCY 1 cut(s) 792
BstHHI GCGC 2 cut(s) 791, 798
BstKTI GATC 6 cut(s) 493, 682, 775, 784, 898, 1054
BstMAI GTCTC 1 cut(s) 744
BstMBI GATC 6 cut(s) 490, 679, 772, 781, 895, 1051
BstMWI GCNNNNNNNGC 2 cut(s) 713, 795
BstNI CCWGG 1 cut(s) 126
BstNSI RCATGY 1 cut(s) 1157
BstPI GGTNACC 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 124
BstSFI CTRYAG 2 cut(s) 486, 918
BstUI CGCG 1 cut(s) 798
BstV1I GCAGC 3 cut(s) 451, 577, 1069
BstX2I RGATCY 1 cut(s) 490
BstXI CCANNNNNNTGG 1 cut(s) 690
BstYI RGATCY 1 cut(s) 490
BsuRI GGCC 4 cut(s) 117, 149, 242, 1130
BtgI CCRYGG 2 cut(s) 642, 760
BtrI CACGTC 1 cut(s) 427
BtsCI GGATG 3 cut(s) 162, 396, 652
BtsI GCAGTG 1 cut(s) 469
BtsIMutI CAGTG 2 cut(s) 469, 1110
Cac8I GCNNGC 2 cut(s) 86, 1072
CfoI GCGC 2 cut(s) 791, 798
Cfr13I GGNCC 2 cut(s) 259, 694
CseI GACGC 2 cut(s) 346, 611
Csp6I GTAC 3 cut(s) 454, 565, 1040
CviAII CATG 7 cut(s) 238, 252, 256, 643, 761, 848, 1154
CviQI GTAC 3 cut(s) 454, 565, 1040
DdeI CTNAG 9 cut(s) 138, 365, 389, 711, 735, 785, 792, 830, 951
DpnI GATC 6 cut(s) 492, 681, 774, 783, 897, 1053
DpnII GATC 6 cut(s) 490, 679, 772, 781, 895, 1051
EaeI YGGCCR 1 cut(s) 240
Eam1104I CTCTTC 4 cut(s) 16, 22, 95, 633
EarI CTCTTC 4 cut(s) 16, 22, 95, 633
EciI GGCGGA 1 cut(s) 836
Eco130I CCWWGG 4 cut(s) 337, 400, 642, 760
Eco32I GATATC 2 cut(s) 310, 959
Eco47I GGWCC 2 cut(s) 259, 694
Eco47III AGCGCT 1 cut(s) 790
Eco72I CACGTG 1 cut(s) 701
Eco88I CYCGRG 2 cut(s) 164, 1112
Eco91I GGTNACC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 694
EcoO65I GGTNACC 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 124
EcoRV GATATC 2 cut(s) 310, 959
EcoT14I CCWWGG 4 cut(s) 337, 400, 642, 760
EcoT22I ATGCAT 1 cut(s) 257
ErhI CCWWGG 4 cut(s) 337, 400, 642, 760
FaeI CATG 7 cut(s) 241, 255, 259, 646, 764, 851, 1157
FaqI GGGAC 3 cut(s) 10, 707, 1131
FatI CATG 7 cut(s) 237, 251, 255, 642, 760, 847, 1153
FauI CCCGC 1 cut(s) 1079
FauNDI CATATG 1 cut(s) 1029
Fnu4HI GCNGC 6 cut(s) 355, 465, 527, 591, 708, 1058
FokI GGATG 3 cut(s) 169, 383, 659
Fsp4HI GCNGC 6 cut(s) 355, 465, 527, 591, 708, 1058
FspBI CTAG 3 cut(s) 113, 554, 996
GlaI GCGC 2 cut(s) 790, 797
GluI GCNGC 6 cut(s) 355, 465, 527, 591, 708, 1058
HaeII RGCGCY 1 cut(s) 792
HaeIII GGCC 4 cut(s) 117, 149, 242, 1130
HgaI GACGC 2 cut(s) 346, 611
HhaI GCGC 2 cut(s) 791, 798
Hin1I GRCGYC 1 cut(s) 357
Hin1II CATG 7 cut(s) 241, 255, 259, 646, 764, 851, 1157
Hin6I GCGC 2 cut(s) 789, 796
HinP1I GCGC 2 cut(s) 789, 796
HinfI GANTC 5 cut(s) 42, 131, 248, 302, 369
HphI GGTGA 7 cut(s) 37, 85, 175, 352, 872, 881, 1197
Hpy166II GTNNAC 1 cut(s) 1205
Hpy188I TCNGA 7 cut(s) 41, 141, 291, 307, 368, 748, 970
Hpy188III TCNNGA 3 cut(s) 320, 805, 940
Hpy8I GTNNAC 1 cut(s) 1205
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 1 cut(s) 753
HpyCH4III ACNGT 3 cut(s) 57, 173, 665
HpyCH4IV ACGT 2 cut(s) 426, 700
HpyCH4V TGCA 6 cut(s) 109, 255, 841, 847, 920, 1033
HpyF10VI GCNNNNNNNGC 2 cut(s) 713, 795
HpyF3I CTNAG 9 cut(s) 138, 365, 389, 711, 735, 785, 792, 830, 951
HpySE526I ACGT 2 cut(s) 426, 700
Hsp92I GRCGYC 1 cut(s) 357
Hsp92II CATG 7 cut(s) 241, 255, 259, 646, 764, 851, 1157
HspAI GCGC 2 cut(s) 789, 796
KflI GGGWCCC 1 cut(s) 694
Kzo9I GATC 6 cut(s) 490, 679, 772, 781, 895, 1051
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 1 cut(s) 587
LpnPI CCDG 6 cut(s) 111, 138, 489, 534, 1028, 1116
Lsp1109I GCAGC 3 cut(s) 451, 577, 1069
LweI GCATC 4 cut(s) 118, 402, 1009, 1100
MaeI CTAG 3 cut(s) 113, 554, 996
MaeII ACGT 2 cut(s) 426, 700
MaeIII GTNAC 3 cut(s) 119, 181, 358
MalI GATC 6 cut(s) 492, 681, 774, 783, 897, 1053
MboI GATC 6 cut(s) 490, 679, 772, 781, 895, 1051
MboII GAAGA 7 cut(s) 3, 9, 82, 364, 620, 920, 982
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 2 cut(s) 171, 1113
MluCI AATT 5 cut(s) 284, 532, 751, 1010, 1133
MlyI GAGTC 2 cut(s) 140, 257
Mph1103I ATGCAT 1 cut(s) 257
MroXI GAANNNNTTC 1 cut(s) 627
MseI TTAA 2 cut(s) 207, 660
MslI CAYNNNNRTG 4 cut(s) 688, 765, 846, 852
MspA1I CMGCKG 2 cut(s) 464, 503
MspR9I CCNGG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 126
MvnI CGCG 1 cut(s) 798
MwoI GCNNNNNNNGC 2 cut(s) 713, 795
NcoI CCATGG 2 cut(s) 642, 760
NdeI CATATG 1 cut(s) 1029
NdeII GATC 6 cut(s) 490, 679, 772, 781, 895, 1051
NlaIII CATG 7 cut(s) 241, 255, 259, 646, 764, 851, 1157
NlaIV GGNNCC 2 cut(s) 695, 696
NmuCI GTSAC 3 cut(s) 119, 181, 358
NsiI ATGCAT 1 cut(s) 257
NspI RCATGY 1 cut(s) 1157
PaeR7I CTCGAG 1 cut(s) 164
PciI ACATGT 1 cut(s) 1153
PciSI GCTCTTC 1 cut(s) 95
PdmI GAANNNNTTC 1 cut(s) 627
PfeI GAWTC 3 cut(s) 42, 302, 369
PflMI CCANNNNNTGG 1 cut(s) 238
PkrI GCNGC 6 cut(s) 356, 466, 528, 592, 709, 1059
PleI GAGTC 2 cut(s) 139, 256
PmaCI CACGTG 1 cut(s) 701
PmlI CACGTG 1 cut(s) 701
PpsI GAGTC 2 cut(s) 139, 256
Ppu21I YACGTR 1 cut(s) 701
PpuMI RGGWCCY 1 cut(s) 694
PscI ACATGT 1 cut(s) 1153
Psp5II RGGWCCY 1 cut(s) 694
Psp6I CCWGG 1 cut(s) 124
PspCI CACGTG 1 cut(s) 701
PspEI GGTNACC 1 cut(s) 181
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 2 cut(s) 695, 696
PspPI GGNCC 2 cut(s) 259, 694
PspPPI RGGWCCY 1 cut(s) 694
PspXI VCTCGAGB 1 cut(s) 164
PstI CTGCAG 1 cut(s) 922
PsuI RGATCY 1 cut(s) 490
RsaI GTAC 3 cut(s) 455, 566, 1041
RsaNI GTAC 3 cut(s) 454, 565, 1040
RseI CAYNNNNRTG 4 cut(s) 688, 765, 846, 852
SapI GCTCTTC 1 cut(s) 95
SaqAI TTAA 2 cut(s) 207, 660
SatI GCNGC 6 cut(s) 355, 465, 527, 591, 708, 1058
Sau3AI GATC 6 cut(s) 490, 679, 772, 781, 895, 1051
Sau96I GGNCC 2 cut(s) 259, 694
ScaI AGTACT 1 cut(s) 566
SchI GAGTC 2 cut(s) 140, 257
ScrFI CCNGG 1 cut(s) 126
SduI GDGCHC 2 cut(s) 171, 1113
SfaNI GCATC 4 cut(s) 118, 402, 1009, 1100
SfcI CTRYAG 2 cut(s) 486, 918
Sfr274I CTCGAG 1 cut(s) 164
SinI GGWCC 2 cut(s) 259, 694
SlaI CTCGAG 1 cut(s) 164
SmiMI CAYNNNNRTG 4 cut(s) 688, 765, 846, 852
SmlI CTYRAG 2 cut(s) 164, 433
SmoI CTYRAG 2 cut(s) 164, 433
Sse9I AATT 5 cut(s) 284, 532, 751, 1010, 1133
SspMI CTAG 3 cut(s) 113, 554, 996
StyD4I CCNGG 1 cut(s) 124
StyI CCWWGG 4 cut(s) 337, 400, 642, 760
TaaI ACNGT 3 cut(s) 57, 173, 665
TaiI ACGT 2 cut(s) 429, 703
TaqI TCGA 1 cut(s) 165
TasI AATT 5 cut(s) 284, 532, 751, 1010, 1133
TatI WGTACW 3 cut(s) 453, 564, 1039
TauI GCSGC 3 cut(s) 357, 529, 710
TfiI GAWTC 3 cut(s) 42, 302, 369
Tru1I TTAA 2 cut(s) 207, 660
Tru9I TTAA 2 cut(s) 207, 660
TscAI CASTG 2 cut(s) 476, 1110
TseFI GTSAC 3 cut(s) 119, 181, 358
TseI GCWGC 3 cut(s) 464, 590, 1057
Tsp45I GTSAC 3 cut(s) 119, 181, 358
TspDTI ATGAA 3 cut(s) 181, 297, 828
TspRI CASTG 2 cut(s) 476, 1110
Van91I CCANNNNNTGG 1 cut(s) 238
VpaK11BI GGWCC 2 cut(s) 259, 694
XapI RAATTY 4 cut(s) 284, 751, 1010, 1133
XceI RCATGY 1 cut(s) 1157
XhoI CTCGAG 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 627
XspI CTAG 3 cut(s) 113, 554, 996
ZrmI AGTACT 1 cut(s) 566
Zsp2I ATGCAT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.