Rw1G028570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000612
Physical Location & Seq
Forward (+)
56244695 .. 56251377
6683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G028570.1

Sequence Viewer

Length: 996 bp
ATGGCCTTCTTTGCCTATCCCTGTGATAATGTCCCCCCCATCTCAAAAGAAGAGTTCAGCTTGTTTCACACCATCGACCGCAAGCTCTTCACGCGATTGGTCTTCGGCCTCGGCCGTGACCCCGCCGAGTCGGCCCAAGTCATGGCGCTCTGGATGTGGTTGGAGCACAATGGGAAGGAGTTTAACTTGGTTTACAAGACACTGATGACTCTACCCAACACGCTTCTCAATGCCATGGCCGAGGAGTCCGTTTTGGCTTTGAAGTGCATTCAGAGTGATGACTTCCCTCGTCCTAACCTTGACATCACTACTGATATTCCTCTGCTCCAAGCAATTAGCACAAGTGGTGTCACCCTTAAATTCTTCCATGATAATAGGATAGGGATCATGCGAGGTGTCTCTGCGCTGTTCAAAGACATTTGCTTGAAAGCGTTTCAGGACTTGTTGCTTCATCCTCACCAAGAGAGAAGAGCCGATGCTAATGTGTACAATCCAACAATGGGTGCTATTGCTCCACAGGTTTGGAACCCGGCAATCAGTGGTGCAAGTTTTCGGAATTTGGGTGGCGGTTTTGATCCTTATGACCTTTCAGCTCAGCGCGAGATTTTGAACAAGGAAATGGAGGAGGTTTTGAGCCGTTTGACTTTGAATGATGATGAAGATGATGGCCGTGGTGAAGATCAAGAAGTTGAGCCCCATGAGAGGACTATTTTCTTGACATTTTCTAAAGGGTACCCCATTTCTGAAAATGAAATAAGAGAATTTATCACTAAATTCCATATACATATATATATATATATATATGAGGATTTTTTTTATGCTATCCATATGCAAGAAGTACAGGGAAAGGATCAGCAGGCCCTATATGCCCGCATTGTGGTTCGCTCCGCTTCCTTTATTCCAGTGGTGCTTGAGGGACAAAGGAAGGTAAAATTCATCATTAATAGAAAACATGTTTGGGCTAGGAAATATGTGAAAAAGAATGCAACAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

331

Amino Acids

38.15

Weight (kDa)

6.08

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 732
AccB1I GGYRCC 1 cut(s) 732
AccB7I CCANNNNNTGG 1 cut(s) 142
AccII CGCG 2 cut(s) 94, 600
AciI CCGC 5 cut(s) 79, 123, 567, 871, 888
AclWI GGATC 3 cut(s) 392, 569, 858
AcoI YGGCCR 3 cut(s) 112, 237, 667
AcsI RAATTY 5 cut(s) 359, 556, 761, 773, 932
AfaI GTAC 3 cut(s) 488, 734, 840
AfiI CCNNNNNNNGG 4 cut(s) 142, 500, 702, 877
AflIII ACRYGT 1 cut(s) 952
AgsI TTSAA 5 cut(s) 262, 412, 427, 610, 649
AjuI GAANNNNNNNTTGG 2 cut(s) 940, 972
AluBI AGCT 3 cut(s) 60, 85, 593
AluI AGCT 3 cut(s) 60, 85, 593
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 403
AlwI GGATC 3 cut(s) 392, 569, 858
AoxI GGCC 7 cut(s) 3, 106, 112, 132, 237, 667, 858
ApoI RAATTY 5 cut(s) 359, 556, 761, 773, 932
AseI ATTAAT 1 cut(s) 942
Asp718I GGTACC 1 cut(s) 732
AspLEI GCGC 3 cut(s) 148, 406, 600
AspS9I GGNCC 2 cut(s) 133, 859
AsuC2I CCSGG 1 cut(s) 530
AsuHPI GGTGA 3 cut(s) 343, 449, 686
BanI GGYRCC 1 cut(s) 732
BanII GRGCYC 1 cut(s) 696
BbsI GAAGAC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 168
BccI CCATC 3 cut(s) 47, 80, 659
BceAI ACGGC 3 cut(s) 99, 621, 654
BcnI CCSGG 1 cut(s) 530
BcoDI GTCTC 1 cut(s) 403
BfaI CTAG 1 cut(s) 963
BfoI RGCGCY 1 cut(s) 149
BglI GCCNNNNNGGC 1 cut(s) 131
BlpI GCTNAGC 1 cut(s) 594
Bme1390I CCNGG 1 cut(s) 530
BmgT120I GGNCC 2 cut(s) 133, 859
BmiI GGNNCC 2 cut(s) 527, 734
BmrFI CCNGG 1 cut(s) 530
BmsI GCATC 1 cut(s) 466
BpiI GAAGAC 1 cut(s) 94
Bpu1102I GCTNAGC 1 cut(s) 594
BpuEI CTTGAG 1 cut(s) 932
BpuMI CCSGG 1 cut(s) 530
BsaBI GATNNNNATC 1 cut(s) 383
BsaJI CCNNGG 4 cut(s) 109, 234, 240, 670
Bsc4I CCNNNNNNNGG 4 cut(s) 142, 500, 702, 877
Bse1I ACTGG 1 cut(s) 902
Bse8I GATNNNNATC 1 cut(s) 383
BseDI CCNNGG 4 cut(s) 109, 234, 240, 670
BseGI GGATG 2 cut(s) 159, 451
BseJI GATNNNNATC 1 cut(s) 383
BseLI CCNNNNNNNGG 4 cut(s) 142, 500, 702, 877
BseMII CTCAG 1 cut(s) 608
BseNI ACTGG 1 cut(s) 902
BseRI GAGGAG 2 cut(s) 257, 638
BseX3I CGGCCG 1 cut(s) 112
Bsh1236I CGCG 2 cut(s) 94, 600
Bsh1285I CGRYCG 2 cut(s) 79, 115
BshFI GGCC 7 cut(s) 5, 108, 114, 134, 239, 669, 860
BshNI GGYRCC 1 cut(s) 732
BsiEI CGRYCG 2 cut(s) 79, 115
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 1 cut(s) 530
BslFI GGGAC 2 cut(s) 17, 930
BslI CCNNNNNNNGG 4 cut(s) 142, 500, 702, 877
BsmAI GTCTC 1 cut(s) 403
BsmFI GGGAC 2 cut(s) 17, 930
BsmI GAATGC 2 cut(s) 267, 988
BsnI GGCC 7 cut(s) 5, 108, 114, 134, 239, 669, 860
Bsp1286I GDGCHC 2 cut(s) 168, 696
Bsp1407I TGTACA 1 cut(s) 486
Bsp143I GATC 4 cut(s) 384, 574, 679, 850
Bsp1720I GCTNAGC 1 cut(s) 594
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 5 cut(s) 79, 123, 567, 871, 888
BspANI GGCC 7 cut(s) 5, 108, 114, 134, 239, 669, 860
BspCNI CTCAG 1 cut(s) 607
BspFNI CGCG 2 cut(s) 94, 600
BspLI GGNNCC 2 cut(s) 527, 734
BspPI GGATC 3 cut(s) 392, 569, 858
BspQI GCTCTTC 2 cut(s) 92, 463
BspT107I GGYRCC 1 cut(s) 732
BsrGI TGTACA 1 cut(s) 486
BsrI ACTGG 1 cut(s) 902
BssECI CCNNGG 4 cut(s) 109, 234, 240, 670
BssMI GATC 4 cut(s) 384, 574, 679, 850
BssT1I CCWWGG 1 cut(s) 234
Bst6I CTCTTC 3 cut(s) 45, 92, 463
BstAUI TGTACA 1 cut(s) 486
BstC8I GCNNGC 3 cut(s) 83, 858, 871
BstDEI CTNAG 1 cut(s) 594
BstDSI CCRYGG 2 cut(s) 234, 670
BstF5I GGATG 2 cut(s) 159, 451
BstFNI CGCG 2 cut(s) 94, 600
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 3 cut(s) 148, 406, 600
BstKTI GATC 4 cut(s) 387, 577, 682, 853
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 4 cut(s) 384, 574, 679, 850
BstMCI CGRYCG 2 cut(s) 79, 115
BstMWI GCNNNNNNNGC 4 cut(s) 11, 91, 131, 866
BstNSI RCATGY 1 cut(s) 956
BstSCI CCNGG 1 cut(s) 528
BstUI CGCG 2 cut(s) 94, 600
BstV2I GAAGAC 1 cut(s) 94
BstXI CCANNNNNNTGG 1 cut(s) 522
BstZI CGGCCG 1 cut(s) 112
BsuRI GGCC 7 cut(s) 5, 108, 114, 134, 239, 669, 860
BtgI CCRYGG 2 cut(s) 234, 670
BtsCI GGATG 2 cut(s) 159, 451
BtsIMutI CAGTG 3 cut(s) 200, 544, 909
Cac8I GCNNGC 3 cut(s) 83, 858, 871
CfoI GCGC 3 cut(s) 148, 406, 600
Cfr13I GGNCC 2 cut(s) 133, 859
Csp6I GTAC 3 cut(s) 487, 733, 839
CviAII CATG 6 cut(s) 142, 235, 368, 388, 698, 953
CviQI GTAC 3 cut(s) 487, 733, 839
DdeI CTNAG 1 cut(s) 594
DpnI GATC 4 cut(s) 386, 576, 681, 852
DpnII GATC 4 cut(s) 384, 574, 679, 850
EaeI YGGCCR 3 cut(s) 112, 237, 667
EagI CGGCCG 1 cut(s) 112
Eam1104I CTCTTC 3 cut(s) 45, 92, 463
EarI CTCTTC 3 cut(s) 45, 92, 463
EclXI CGGCCG 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 696
Eco52I CGGCCG 1 cut(s) 112
EcoO109I RGGNCCY 1 cut(s) 859
EcoT14I CCWWGG 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 696
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 6 cut(s) 145, 238, 371, 391, 701, 956
FaqI GGGAC 2 cut(s) 17, 930
FatI CATG 6 cut(s) 141, 234, 367, 387, 697, 952
FauI CCCGC 2 cut(s) 130, 878
FauNDI CATATG 1 cut(s) 828
FokI GGATG 2 cut(s) 166, 438
FriOI GRGCYC 1 cut(s) 696
FspBI CTAG 1 cut(s) 963
GlaI GCGC 3 cut(s) 147, 405, 599
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 7 cut(s) 5, 108, 114, 134, 239, 669, 860
HapII CCGG 1 cut(s) 530
HhaI GCGC 3 cut(s) 148, 406, 600
Hin1II CATG 6 cut(s) 145, 238, 371, 391, 701, 956
Hin6I GCGC 3 cut(s) 146, 404, 598
HinP1I GCGC 3 cut(s) 146, 404, 598
HinfI GANTC 3 cut(s) 128, 208, 245
HpaII CCGG 1 cut(s) 530
HphI GGTGA 3 cut(s) 343, 449, 686
Hpy166II GTNNAC 2 cut(s) 193, 487
Hpy188I TCNGA 3 cut(s) 273, 555, 745
Hpy188III TCNNGA 4 cut(s) 151, 437, 683, 715
Hpy8I GTNNAC 2 cut(s) 193, 487
HpyAV CCTTC 3 cut(s) 16, 169, 919
HpyCH4V TGCA 4 cut(s) 267, 545, 832, 986
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 91, 131, 866
HpyF3I CTNAG 1 cut(s) 594
Hsp92II CATG 6 cut(s) 145, 238, 371, 391, 701, 956
HspAI GCGC 3 cut(s) 146, 404, 598
KpnI GGTACC 1 cut(s) 736
Kzo9I GATC 4 cut(s) 384, 574, 679, 850
LguI GCTCTTC 2 cut(s) 92, 463
LmnI GCTCC 4 cut(s) 163, 330, 517, 890
LpnPI CCDG 8 cut(s) 34, 136, 422, 503, 543, 827, 842, 915
LweI GCATC 1 cut(s) 466
MaeI CTAG 1 cut(s) 963
MaeIII GTNAC 2 cut(s) 116, 349
MalI GATC 4 cut(s) 386, 576, 681, 852
MboI GATC 4 cut(s) 384, 574, 679, 850
MboII GAAGA 7 cut(s) 62, 79, 94, 355, 480, 671, 689
MhlI GDGCHC 2 cut(s) 168, 696
MluCI AATT 6 cut(s) 333, 359, 556, 761, 773, 932
MlyI GAGTC 3 cut(s) 137, 202, 254
MmeI TCCRAC 2 cut(s) 141, 518
MseI TTAA 3 cut(s) 183, 357, 942
MspI CCGG 1 cut(s) 530
MspR9I CCNGG 1 cut(s) 530
Mva1269I GAATGC 2 cut(s) 267, 988
MvnI CGCG 2 cut(s) 94, 600
MwoI GCNNNNNNNGC 4 cut(s) 11, 91, 131, 866
NciI CCSGG 1 cut(s) 530
NcoI CCATGG 1 cut(s) 234
NdeI CATATG 1 cut(s) 828
NdeII GATC 4 cut(s) 384, 574, 679, 850
NlaIII CATG 6 cut(s) 145, 238, 371, 391, 701, 956
NlaIV GGNNCC 2 cut(s) 527, 734
NmeAIII GCCGAG 3 cut(s) 90, 151, 265
NmuCI GTSAC 2 cut(s) 116, 349
NspI RCATGY 1 cut(s) 956
PciI ACATGT 1 cut(s) 952
PciSI GCTCTTC 2 cut(s) 92, 463
PctI GAATGC 2 cut(s) 267, 988
PflMI CCANNNNNTGG 1 cut(s) 142
PleI GAGTC 3 cut(s) 136, 202, 253
PpsI GAGTC 3 cut(s) 136, 202, 253
PscI ACATGT 1 cut(s) 952
PshBI ATTAAT 1 cut(s) 942
PspN4I GGNNCC 2 cut(s) 527, 734
PspPI GGNCC 2 cut(s) 133, 859
RsaI GTAC 3 cut(s) 488, 734, 840
RsaNI GTAC 3 cut(s) 487, 733, 839
SapI GCTCTTC 2 cut(s) 92, 463
SaqAI TTAA 3 cut(s) 183, 357, 942
Sau3AI GATC 4 cut(s) 384, 574, 679, 850
Sau96I GGNCC 2 cut(s) 133, 859
SchI GAGTC 3 cut(s) 137, 202, 254
ScrFI CCNGG 1 cut(s) 530
SduI GDGCHC 2 cut(s) 168, 696
SetI ASST 9 cut(s) 62, 87, 300, 397, 522, 588, 595, 630, 930
SfaNI GCATC 1 cut(s) 466
SmlI CTYRAG 1 cut(s) 911
SmoI CTYRAG 1 cut(s) 911
Sse9I AATT 6 cut(s) 333, 359, 556, 761, 773, 932
SsiI CCGC 5 cut(s) 79, 123, 567, 871, 888
SspMI CTAG 1 cut(s) 963
StyD4I CCNGG 1 cut(s) 528
StyI CCWWGG 1 cut(s) 234
TaqI TCGA 1 cut(s) 75
TasI AATT 6 cut(s) 333, 359, 556, 761, 773, 932
TatI WGTACW 2 cut(s) 486, 838
Tru1I TTAA 3 cut(s) 183, 357, 942
Tru9I TTAA 3 cut(s) 183, 357, 942
TscAI CASTG 3 cut(s) 207, 544, 909
TseFI GTSAC 2 cut(s) 116, 349
Tsp45I GTSAC 2 cut(s) 116, 349
TspDTI ATGAA 4 cut(s) 440, 672, 765, 925
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 3 cut(s) 207, 544, 909
Van91I CCANNNNNTGG 1 cut(s) 142
VspI ATTAAT 1 cut(s) 942
XapI RAATTY 5 cut(s) 359, 556, 761, 773, 932
XceI RCATGY 1 cut(s) 956
XspI CTAG 1 cut(s) 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.