Prupe.2G219700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000612
Physical Location & Seq
Forward (+)
24843371 .. 24845936
2566 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G219700.1

Sequence Viewer

Length: 945 bp
ATGGCCCTGTGGATGTGGCTCGAACACGCTACCAAGAAGTACAACTTTGTGCACAAATTATGTGTCACTTTACCCGACACCCTTCTAAATGGCATTGCGGACGAGTCTGTCGTGGCCTTGAACTGCATTCAACATGACGACTTCCATGTCGGCATCACTAATCGCAACCAAGGCATTCCCCTACTCAATGCCTTAACCAAAACTGGCCCCATGCCTAAGGGAAGTAAAAATCTGAAACAATACCCATTTCACCAACTTTACCTAACTTCCCCACCAAAAACAATTAGCTCATGCATATGTACATTACAATTCATTGCATTGTTCAACGAGGTTTGCATGAGAGCCTTTGATGACTTGTTCCCTAAACCACAACCAAACCCGGCTAAACAAATGATGTTGAATGCCGACATGTTTCGTCCTTATAATCCATCATTTCACAATATTGCGGCCATCACCTATTACATGGTCGGGGCATCGAAAATGGGACCTTTTCCAAATCGAAGAATGTATGACTACCTGCGTGGTGTTTTTGATCCCTATGATCTTACTGCTCAGTGTCAGATTTTGAATGAGAAGATGGGGAACGTTTTGAGCCGTTTGAATCTAAATGATGATCAACATGAGGCAGAGGATGTGTCTGCTGATGAGAGGACTATTTTCTTGACATTTTCTAAGGGTTATCCCATTTCTGAAGTTGAAGTTAGAGAGTTCTTCTCTAGGAAATTTGGAGACTTTATTGATGGTGTCTTTATGCAAGAAGTGCCTGCTGAGAAGCAACCATTGTATGCCCATCTTGTGGTTCGATCTACTTCCTCCATTCCAATTATTCTTAAAGGGAAAAACAAAGCCAAATTCTTCATCAATGGGAAGCATGTTCAGGCAAGGAAATACGTGTGTAAATCAAAATCACCAGGAGATCCGAGTTCACTTGCAACTTCAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

315

Amino Acids

35.65

Weight (kDa)

8.83

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 423
AasI GACNNNNNNGTC 2 cut(s) 107, 146
Acc36I ACCTGC 1 cut(s) 525
AccB7I CCANNNNNTGG 1 cut(s) 796
AciI CCGC 2 cut(s) 98, 446
AclI AACGTT 1 cut(s) 585
AclWI GGATC 2 cut(s) 527, 911
AcoI YGGCCR 1 cut(s) 447
AcsI RAATTY 2 cut(s) 722, 851
AcuI CTGAAG 1 cut(s) 711
AfaI GTAC 2 cut(s) 41, 301
AfiI CCNNNNNNNGG 1 cut(s) 796
AflIII ACRYGT 2 cut(s) 408, 891
AgsI TTSAA 8 cut(s) 121, 131, 325, 400, 568, 601, 698, 939
AjnI CCWGG 1 cut(s) 910
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 1 cut(s) 723
Alw44I GTGCAC 1 cut(s) 50
AlwI GGATC 2 cut(s) 527, 911
AoxI GGCC 4 cut(s) 3, 114, 205, 447
ApaLI GTGCAC 1 cut(s) 50
ApoI RAATTY 2 cut(s) 722, 851
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
AspS9I GGNCC 3 cut(s) 4, 206, 485
AsuC2I CCSGG 1 cut(s) 380
AsuHPI GGTGA 3 cut(s) 242, 445, 900
AvaII GGWCC 1 cut(s) 485
AxyI CCTNAGG 1 cut(s) 216
BaeGI GKGCMC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 54
BccI CCATC 5 cut(s) 436, 458, 571, 734, 798
BceAI ACGGC 1 cut(s) 579
BciT130I CCWGG 1 cut(s) 912
BclI TGATCA 1 cut(s) 613
BcnI CCSGG 1 cut(s) 380
BcoDI GTCTC 1 cut(s) 723
BfaI CTAG 1 cut(s) 717
BfuAI ACCTGC 1 cut(s) 525
BisI GCNGC 1 cut(s) 447
BlsI GCNGC 1 cut(s) 448
Bme1390I CCNGG 2 cut(s) 380, 912
Bme18I GGWCC 1 cut(s) 485
BmgT120I GGNCC 3 cut(s) 4, 206, 485
BmiI GGNNCC 2 cut(s) 208, 486
BmrFI CCNGG 2 cut(s) 380, 912
BmsI GCATC 2 cut(s) 162, 482
BplI GAGNNNNNCTC 2 cut(s) 698, 730
BpuMI CCSGG 1 cut(s) 380
BsaAI YACGTR 1 cut(s) 892
BsaJI CCNNGG 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 796
Bse1I ACTGG 1 cut(s) 208
Bse21I CCTNAGG 1 cut(s) 216
Bse3DI GCAATG 2 cut(s) 93, 312
BseBI CCWGG 1 cut(s) 912
BseDI CCNNGG 1 cut(s) 169
BseGI GGATG 2 cut(s) 18, 637
BseLI CCNNNNNNNGG 1 cut(s) 796
BseMI GCAATG 2 cut(s) 93, 312
BseMII CTCAG 2 cut(s) 566, 759
BseNI ACTGG 1 cut(s) 208
BseSI GKGCMC 1 cut(s) 54
BshFI GGCC 4 cut(s) 5, 116, 207, 449
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 1 cut(s) 380
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 1 cut(s) 796
BsmAI GTCTC 1 cut(s) 723
BsmFI GGGAC 1 cut(s) 498
BsmI GAATGC 3 cut(s) 126, 174, 406
BsnI GGCC 4 cut(s) 5, 116, 207, 449
Bsp1286I GDGCHC 1 cut(s) 54
Bsp1407I TGTACA 1 cut(s) 299
Bsp143I GATC 5 cut(s) 532, 541, 613, 803, 916
BspACI CCGC 2 cut(s) 98, 446
BspANI GGCC 4 cut(s) 5, 116, 207, 449
BspCNI CTCAG 2 cut(s) 565, 760
BspLI GGNNCC 2 cut(s) 208, 486
BspMI ACCTGC 1 cut(s) 525
BspPI GGATC 2 cut(s) 527, 911
BsrDI GCAATG 2 cut(s) 93, 312
BsrGI TGTACA 1 cut(s) 299
BsrI ACTGG 1 cut(s) 208
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 5 cut(s) 532, 541, 613, 803, 916
BssT1I CCWWGG 1 cut(s) 169
Bst2UI CCWGG 1 cut(s) 912
BstAPI GCANNNNNTGC 1 cut(s) 760
BstAUI TGTACA 1 cut(s) 299
BstBAI YACGTR 1 cut(s) 892
BstC8I GCNNGC 1 cut(s) 765
BstDEI CTNAG 4 cut(s) 216, 552, 672, 768
BstF5I GGATG 2 cut(s) 18, 637
BstKTI GATC 5 cut(s) 535, 544, 616, 806, 919
BstMAI GTCTC 1 cut(s) 723
BstMBI GATC 5 cut(s) 532, 541, 613, 803, 916
BstMWI GCNNNNNNNGC 2 cut(s) 171, 760
BstNI CCWGG 1 cut(s) 912
BstNSI RCATGY 2 cut(s) 412, 875
BstSCI CCNGG 2 cut(s) 378, 910
BstSLI GKGCMC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 916
BstYI RGATCY 1 cut(s) 916
Bsu36I CCTNAGG 1 cut(s) 216
BsuRI GGCC 4 cut(s) 5, 116, 207, 449
BtsCI GGATG 2 cut(s) 18, 637
BtsIMutI CAGTG 1 cut(s) 560
BveI ACCTGC 1 cut(s) 525
Cac8I GCNNGC 1 cut(s) 765
Cfr13I GGNCC 3 cut(s) 4, 206, 485
Csp6I GTAC 2 cut(s) 40, 300
CviAII CATG 9 cut(s) 134, 146, 211, 291, 337, 409, 463, 620, 872
CviQI GTAC 2 cut(s) 40, 300
DdeI CTNAG 4 cut(s) 216, 552, 672, 768
DpnI GATC 5 cut(s) 534, 543, 615, 805, 918
DpnII GATC 5 cut(s) 532, 541, 613, 803, 916
DrdI GACNNNNNNGTC 2 cut(s) 107, 146
DseDI GACNNNNNNGTC 2 cut(s) 107, 146
EaeI YGGCCR 1 cut(s) 447
Eco130I CCWWGG 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 485
Eco57I CTGAAG 1 cut(s) 711
Eco81I CCTNAGG 1 cut(s) 216
EcoO109I RGGNCCY 1 cut(s) 485
EcoRII CCWGG 1 cut(s) 910
EcoT14I CCWWGG 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 9 cut(s) 137, 149, 214, 294, 340, 412, 466, 623, 875
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FaqI GGGAC 1 cut(s) 498
FatI CATG 9 cut(s) 133, 145, 210, 290, 336, 408, 462, 619, 871
FauNDI CATATG 1 cut(s) 296
FbaI TGATCA 1 cut(s) 613
Fnu4HI GCNGC 1 cut(s) 447
FokI GGATG 2 cut(s) 25, 644
Fsp4HI GCNGC 1 cut(s) 447
FspBI CTAG 1 cut(s) 717
GluI GCNGC 1 cut(s) 447
HaeIII GGCC 4 cut(s) 5, 116, 207, 449
HapII CCGG 1 cut(s) 380
Hin1II CATG 9 cut(s) 137, 149, 214, 294, 340, 412, 466, 623, 875
HinfI GANTC 2 cut(s) 104, 601
HpaII CCGG 1 cut(s) 380
HphI GGTGA 3 cut(s) 242, 445, 900
Hpy166II GTNNAC 2 cut(s) 52, 926
Hpy188I TCNGA 4 cut(s) 234, 561, 691, 921
Hpy188III TCNNGA 1 cut(s) 661
Hpy8I GTNNAC 2 cut(s) 52, 926
HpyAV CCTTC 1 cut(s) 92
HpyCH4IV ACGT 2 cut(s) 585, 891
HpyCH4V TGCA 7 cut(s) 52, 126, 294, 317, 336, 754, 932
HpyF10VI GCNNNNNNNGC 2 cut(s) 171, 760
HpyF3I CTNAG 4 cut(s) 216, 552, 672, 768
HpySE526I ACGT 2 cut(s) 585, 891
Hsp92II CATG 9 cut(s) 137, 149, 214, 294, 340, 412, 466, 623, 875
Ksp22I TGATCA 1 cut(s) 613
Kzo9I GATC 5 cut(s) 532, 541, 613, 803, 916
LpnPI CCDG 8 cut(s) 20, 189, 393, 530, 777, 863, 897, 924
LweI GCATC 2 cut(s) 162, 482
MaeI CTAG 1 cut(s) 717
MaeII ACGT 2 cut(s) 585, 891
MaeIII GTNAC 1 cut(s) 64
MalI GATC 5 cut(s) 534, 543, 615, 805, 918
MboI GATC 5 cut(s) 532, 541, 613, 803, 916
MboII GAAGA 4 cut(s) 513, 586, 703, 847
MflI RGATCY 1 cut(s) 916
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 7 cut(s) 56, 282, 308, 722, 822, 851, 939
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 5 cut(s) 322, 616, 622, 642, 823
Mph1103I ATGCAT 1 cut(s) 296
MseI TTAA 3 cut(s) 194, 831, 943
MslI CAYNNNNRTG 1 cut(s) 295
MspI CCGG 1 cut(s) 380
MspR9I CCNGG 2 cut(s) 380, 912
Mva1269I GAATGC 3 cut(s) 126, 174, 406
MvaI CCWGG 1 cut(s) 912
MwoI GCNNNNNNNGC 2 cut(s) 171, 760
NciI CCSGG 1 cut(s) 380
NdeI CATATG 1 cut(s) 296
NdeII GATC 5 cut(s) 532, 541, 613, 803, 916
NlaIII CATG 9 cut(s) 137, 149, 214, 294, 340, 412, 466, 623, 875
NlaIV GGNNCC 2 cut(s) 208, 486
NmuCI GTSAC 1 cut(s) 64
NsiI ATGCAT 1 cut(s) 296
NspI RCATGY 2 cut(s) 412, 875
PciI ACATGT 1 cut(s) 408
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PctI GAATGC 3 cut(s) 126, 174, 406
PfeI GAWTC 1 cut(s) 601
PflMI CCANNNNNTGG 1 cut(s) 796
PkrI GCNGC 1 cut(s) 448
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
Ppu21I YACGTR 1 cut(s) 892
PpuMI RGGWCCY 1 cut(s) 485
PscI ACATGT 1 cut(s) 408
PsiI TTATAA 1 cut(s) 423
Psp1406I AACGTT 1 cut(s) 585
Psp5II RGGWCCY 1 cut(s) 485
Psp6I CCWGG 1 cut(s) 910
PspGI CCWGG 1 cut(s) 910
PspN4I GGNNCC 2 cut(s) 208, 486
PspPI GGNCC 3 cut(s) 4, 206, 485
PspPPI RGGWCCY 1 cut(s) 485
PsuI RGATCY 1 cut(s) 916
RsaI GTAC 2 cut(s) 41, 301
RsaNI GTAC 2 cut(s) 40, 300
RseI CAYNNNNRTG 1 cut(s) 295
SaqAI TTAA 3 cut(s) 194, 831, 943
SatI GCNGC 1 cut(s) 447
Sau3AI GATC 5 cut(s) 532, 541, 613, 803, 916
Sau96I GGNCC 3 cut(s) 4, 206, 485
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 2 cut(s) 380, 912
SduI GDGCHC 1 cut(s) 54
SetI ASST 8 cut(s) 264, 290, 333, 458, 490, 519, 588, 894
SfaNI GCATC 2 cut(s) 162, 482
SinI GGWCC 1 cut(s) 485
SmiMI CAYNNNNRTG 1 cut(s) 295
Sse9I AATT 7 cut(s) 56, 282, 308, 722, 822, 851, 939
SsiI CCGC 2 cut(s) 98, 446
SspI AATATT 1 cut(s) 442
SspMI CTAG 1 cut(s) 717
StyD4I CCNGG 2 cut(s) 378, 910
StyI CCWWGG 1 cut(s) 169
TaiI ACGT 2 cut(s) 588, 894
TaqI TCGA 4 cut(s) 21, 476, 499, 802
TasI AATT 7 cut(s) 56, 282, 308, 722, 822, 851, 939
TatI WGTACW 2 cut(s) 39, 299
TauI GCSGC 1 cut(s) 449
TfiI GAWTC 1 cut(s) 601
Tru1I TTAA 3 cut(s) 194, 831, 943
Tru9I TTAA 3 cut(s) 194, 831, 943
TscAI CASTG 1 cut(s) 560
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 301, 847
TspRI CASTG 1 cut(s) 560
Van91I CCANNNNNTGG 1 cut(s) 796
VneI GTGCAC 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 485
XapI RAATTY 2 cut(s) 722, 851
XceI RCATGY 2 cut(s) 412, 875
XspI CTAG 1 cut(s) 717
Zsp2I ATGCAT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.