Rmu_co8509593.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8509593.1
OG0000612
Physical Location & Seq
Forward (+)
2802 .. 3587
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8509593.1_g000001.1.cds

Sequence Viewer

Length: 786 bp
atggccttctttgtctatccctgtgataatgttccccccgtctcaaaagaagagttcagcttgtttcacaccatcgaccgcaagctcttcacgcgattggtcttcggcctcggccgtgaccccgccgagtcggcccaagtcatggcgctgtggatgtggttggaccacaatgggaaggagtttaacttggtttacaagacactgatgactctacccaacacgcttctcaatgccatggccgaggagtccgttttggctttgaagtgcattcagagtgatgacttccctcgtcctaaccttgacatcactactgatattcctctgctccaagcaattagcaaaagtggtgtcacccttaaattcttccatgataatcggatagggatcatgcgaggtgtctctgcgctgttcaaagacatttgcttgaaagcgtttcaggacttgttgcttcatcctcaccaagagagaaaagccgatgctaatgtgtacaatccaacaatgggtgctattgttccacaggtttggaacccggcaatcagtggtgcaagttttcggaatttgggtggcggttttgatccttatgacctttcagttcagcgcgagattttgaacaaggaaatggaggaggttttgagccgtttgactttgaatgacgatgaagatgatggccgtggtgaagatcaagaagttgagccccatgagaggactattttcttgacattttctaaagggtaccccatttctgaaaatgaaataagagaatttatcactaagtatgcacttcca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

29.8

Weight (kDa)

4.97

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 732
AccB1I GGYRCC 1 cut(s) 732
AccB7I CCANNNNNTGG 1 cut(s) 142
AccII CGCG 2 cut(s) 94, 600
AciI CCGC 3 cut(s) 79, 123, 567
AclWI GGATC 2 cut(s) 392, 569
AcoI YGGCCR 3 cut(s) 112, 237, 667
AcsI RAATTY 3 cut(s) 359, 556, 761
AfaI GTAC 2 cut(s) 488, 734
AfiI CCNNNNNNNGG 3 cut(s) 142, 500, 702
AgsI TTSAA 5 cut(s) 262, 412, 427, 610, 649
AluBI AGCT 2 cut(s) 60, 85
AluI AGCT 2 cut(s) 60, 85
Alw26I GTCTC 2 cut(s) 46, 403
AlwI GGATC 2 cut(s) 392, 569
AoxI GGCC 6 cut(s) 3, 106, 112, 132, 237, 667
ApoI RAATTY 3 cut(s) 359, 556, 761
ArsI GACNNNNNNTTYG 2 cut(s) 333, 365
Asp718I GGTACC 1 cut(s) 732
AspLEI GCGC 3 cut(s) 148, 406, 600
AspS9I GGNCC 2 cut(s) 133, 163
AsuC2I CCSGG 1 cut(s) 530
AsuHPI GGTGA 3 cut(s) 343, 449, 686
AvaII GGWCC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 732
BanII GRGCYC 1 cut(s) 696
BbsI GAAGAC 1 cut(s) 94
BccI CCATC 2 cut(s) 80, 659
BceAI ACGGC 3 cut(s) 99, 621, 654
BcnI CCSGG 1 cut(s) 530
BcoDI GTCTC 2 cut(s) 46, 403
BfoI RGCGCY 1 cut(s) 149
BglI GCCNNNNNGGC 1 cut(s) 131
Bme1390I CCNGG 1 cut(s) 530
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 133, 163
BmiI GGNNCC 2 cut(s) 527, 734
BmrFI CCNGG 1 cut(s) 530
BmsI GCATC 1 cut(s) 466
BpiI GAAGAC 1 cut(s) 94
BpuMI CCSGG 1 cut(s) 530
BsaBI GATNNNNATC 1 cut(s) 383
BsaJI CCNNGG 4 cut(s) 109, 234, 240, 670
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 500, 702
Bse8I GATNNNNATC 1 cut(s) 383
BseDI CCNNGG 4 cut(s) 109, 234, 240, 670
BseGI GGATG 2 cut(s) 159, 451
BseJI GATNNNNATC 1 cut(s) 383
BseLI CCNNNNNNNGG 3 cut(s) 142, 500, 702
BseRI GAGGAG 2 cut(s) 257, 638
BseX3I CGGCCG 1 cut(s) 112
Bsh1236I CGCG 2 cut(s) 94, 600
Bsh1285I CGRYCG 2 cut(s) 79, 115
BshFI GGCC 6 cut(s) 5, 108, 114, 134, 239, 669
BshNI GGYRCC 1 cut(s) 732
BsiEI CGRYCG 2 cut(s) 79, 115
BsiSI CCGG 1 cut(s) 530
BslI CCNNNNNNNGG 3 cut(s) 142, 500, 702
BsmAI GTCTC 2 cut(s) 46, 403
BsmBI CGTCTC 1 cut(s) 46
BsmI GAATGC 1 cut(s) 267
BsnI GGCC 6 cut(s) 5, 108, 114, 134, 239, 669
Bsp1286I GDGCHC 1 cut(s) 696
Bsp1407I TGTACA 1 cut(s) 486
Bsp143I GATC 3 cut(s) 384, 574, 679
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 3 cut(s) 79, 123, 567
BspANI GGCC 6 cut(s) 5, 108, 114, 134, 239, 669
BspFNI CGCG 2 cut(s) 94, 600
BspLI GGNNCC 2 cut(s) 527, 734
BspPI GGATC 2 cut(s) 392, 569
BspQI GCTCTTC 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 732
BsrGI TGTACA 1 cut(s) 486
BssECI CCNNGG 4 cut(s) 109, 234, 240, 670
BssMI GATC 3 cut(s) 384, 574, 679
BssT1I CCWWGG 1 cut(s) 234
Bst6I CTCTTC 2 cut(s) 45, 92
BstAUI TGTACA 1 cut(s) 486
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 771
BstDSI CCRYGG 2 cut(s) 234, 670
BstF5I GGATG 2 cut(s) 159, 451
BstFNI CGCG 2 cut(s) 94, 600
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 3 cut(s) 148, 406, 600
BstKTI GATC 3 cut(s) 387, 577, 682
BstMAI GTCTC 2 cut(s) 46, 403
BstMBI GATC 3 cut(s) 384, 574, 679
BstMCI CGRYCG 2 cut(s) 79, 115
BstMWI GCNNNNNNNGC 2 cut(s) 91, 131
BstSCI CCNGG 1 cut(s) 528
BstUI CGCG 2 cut(s) 94, 600
BstV2I GAAGAC 1 cut(s) 94
BstXI CCANNNNNNTGG 1 cut(s) 522
BstZI CGGCCG 1 cut(s) 112
BsuRI GGCC 6 cut(s) 5, 108, 114, 134, 239, 669
BtgI CCRYGG 2 cut(s) 234, 670
BtsCI GGATG 2 cut(s) 159, 451
BtsIMutI CAGTG 2 cut(s) 200, 544
Cac8I GCNNGC 1 cut(s) 83
CfoI GCGC 3 cut(s) 148, 406, 600
Cfr13I GGNCC 2 cut(s) 133, 163
Csp6I GTAC 2 cut(s) 487, 733
CviAII CATG 5 cut(s) 142, 235, 368, 388, 698
CviQI GTAC 2 cut(s) 487, 733
DdeI CTNAG 1 cut(s) 771
DpnI GATC 3 cut(s) 386, 576, 681
DpnII GATC 3 cut(s) 384, 574, 679
EaeI YGGCCR 3 cut(s) 112, 237, 667
EagI CGGCCG 1 cut(s) 112
Eam1104I CTCTTC 2 cut(s) 45, 92
EarI CTCTTC 2 cut(s) 45, 92
EclXI CGGCCG 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 696
Eco47I GGWCC 1 cut(s) 163
Eco52I CGGCCG 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 696
ErhI CCWWGG 1 cut(s) 234
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 5 cut(s) 145, 238, 371, 391, 701
FaiI YATR 7 cut(s) 143, 236, 369, 389, 582, 699, 777
FatI CATG 5 cut(s) 141, 234, 367, 387, 697
FauI CCCGC 1 cut(s) 130
FokI GGATG 2 cut(s) 166, 438
FriOI GRGCYC 1 cut(s) 696
GlaI GCGC 3 cut(s) 147, 405, 599
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 6 cut(s) 5, 108, 114, 134, 239, 669
HapII CCGG 1 cut(s) 530
HhaI GCGC 3 cut(s) 148, 406, 600
Hin1II CATG 5 cut(s) 145, 238, 371, 391, 701
Hin6I GCGC 3 cut(s) 146, 404, 598
HinP1I GCGC 3 cut(s) 146, 404, 598
HinfI GANTC 3 cut(s) 128, 208, 245
HpaII CCGG 1 cut(s) 530
HphI GGTGA 3 cut(s) 343, 449, 686
Hpy166II GTNNAC 2 cut(s) 193, 487
Hpy188I TCNGA 4 cut(s) 273, 378, 555, 745
Hpy188III TCNNGA 3 cut(s) 437, 683, 715
Hpy8I GTNNAC 2 cut(s) 193, 487
HpyAV CCTTC 2 cut(s) 16, 169
HpyCH4V TGCA 3 cut(s) 267, 545, 779
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 131
HpyF3I CTNAG 1 cut(s) 771
Hsp92II CATG 5 cut(s) 145, 238, 371, 391, 701
HspAI GCGC 3 cut(s) 146, 404, 598
KpnI GGTACC 1 cut(s) 736
Kzo9I GATC 3 cut(s) 384, 574, 679
LguI GCTCTTC 1 cut(s) 92
LmnI GCTCC 1 cut(s) 330
LpnPI CCDG 4 cut(s) 34, 422, 503, 543
LweI GCATC 1 cut(s) 466
MaeIII GTNAC 2 cut(s) 116, 349
MalI GATC 3 cut(s) 386, 576, 681
MboI GATC 3 cut(s) 384, 574, 679
MboII GAAGA 6 cut(s) 62, 79, 94, 355, 671, 689
MhlI GDGCHC 1 cut(s) 696
MluCI AATT 4 cut(s) 333, 359, 556, 761
MlyI GAGTC 3 cut(s) 137, 202, 254
MmeI TCCRAC 2 cut(s) 141, 518
MnlI CCTC 9 cut(s) 119, 235, 297, 330, 386, 465, 616, 619, 696
MseI TTAA 2 cut(s) 183, 357
MspI CCGG 1 cut(s) 530
MspR9I CCNGG 1 cut(s) 530
Mva1269I GAATGC 1 cut(s) 267
MvnI CGCG 2 cut(s) 94, 600
MwoI GCNNNNNNNGC 2 cut(s) 91, 131
NciI CCSGG 1 cut(s) 530
NcoI CCATGG 1 cut(s) 234
NdeII GATC 3 cut(s) 384, 574, 679
NlaIII CATG 5 cut(s) 145, 238, 371, 391, 701
NlaIV GGNNCC 2 cut(s) 527, 734
NmeAIII GCCGAG 3 cut(s) 90, 151, 265
NmuCI GTSAC 2 cut(s) 116, 349
PciSI GCTCTTC 1 cut(s) 92
PctI GAATGC 1 cut(s) 267
PflMI CCANNNNNTGG 1 cut(s) 142
PleI GAGTC 3 cut(s) 136, 202, 253
PpsI GAGTC 3 cut(s) 136, 202, 253
PspN4I GGNNCC 2 cut(s) 527, 734
PspPI GGNCC 2 cut(s) 133, 163
RsaI GTAC 2 cut(s) 488, 734
RsaNI GTAC 2 cut(s) 487, 733
SapI GCTCTTC 1 cut(s) 92
SaqAI TTAA 2 cut(s) 183, 357
Sau3AI GATC 3 cut(s) 384, 574, 679
Sau96I GGNCC 2 cut(s) 133, 163
SchI GAGTC 3 cut(s) 137, 202, 254
ScrFI CCNGG 1 cut(s) 530
SduI GDGCHC 1 cut(s) 696
SetI ASST 7 cut(s) 62, 87, 300, 397, 522, 588, 630
SfaNI GCATC 1 cut(s) 466
SinI GGWCC 1 cut(s) 163
Sse9I AATT 4 cut(s) 333, 359, 556, 761
SsiI CCGC 3 cut(s) 79, 123, 567
StyD4I CCNGG 1 cut(s) 528
StyI CCWWGG 1 cut(s) 234
TaqI TCGA 1 cut(s) 75
TasI AATT 4 cut(s) 333, 359, 556, 761
TatI WGTACW 1 cut(s) 486
Tru1I TTAA 2 cut(s) 183, 357
Tru9I TTAA 2 cut(s) 183, 357
TscAI CASTG 2 cut(s) 207, 544
TseFI GTSAC 2 cut(s) 116, 349
Tsp45I GTSAC 2 cut(s) 116, 349
TspDTI ATGAA 3 cut(s) 440, 672, 765
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 2 cut(s) 207, 544
Van91I CCANNNNNTGG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 3 cut(s) 359, 556, 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.