AT5G13620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000612
Physical Location & Seq
Reverse (-)
4385385 .. 4386386
1002 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G13620.1

Sequence Viewer

Length: 906 bp
ATGGCTTCATCTTCATCTGCAGTAGCCGTGACGCGAGACGAGTTCAATGCTTTCCACAAGTGTGACAGAGCCCTTTTCCGCCGTTTTGTCGTGCGACTAAGGCGAGACATTAATCAGTCTCTCCAGGTCATGAGCTTTCTCCTCTATCTCGAGAAAAGTGGTCTTGTAAGCAACCTAATCGTCAACTTTAATTCTTTACCTGATTTCTTCATCAACACAGTGGCTGACGAAGTTGTTATGTGTCTGAGTTGTTTGTCCTACGAAAATTTCTCTATGTTTGTTGCCAACTTTGGGAAAAAAATCATACCTTTGATCACGCGGATGACTGGAGAGTACCTTACTCTCGCAGTCATCCACCAGAACCGTGAAAGCATTCTTCTTGACATGAAGAAGCATTTAACCAGTATATGTTACCCAGCTTTTGAGGATATATGCGTGCAAGCTGAGAAGGAAAAGGTGATAGAGGATATGAAGCACTTGGGGTTTAGCAAGGCTGTTCATAAAGCTGGATCAAGTAGCCAGTTCTTAAGTGAACAACAAGCAACAACAAGAACAAGCAAGGTTGGTGTATTCTCTGAGGATGAGCAAGCAAGGGAAGACGACAGGACTGTCTTCCTCACATTTTCTAGAGGATACCCGCTTTCTGAAGCTGAAGTGCATGCCTACTTCACCAGGAGATTTGGAGAGATTATAGAAGCGATAATCATGCCTGGAGGGGAAGGGAATGAGCAGGCGCTGTATGCAAAGATGGTGTTACATTCTGCAGCCATGATACCGGAGATTGTAAGTGATGGGATCGAAAGGAACAAGTACACCATTAATGGAAAACATGTTTGGGCTCGAAAATACATTCCCAGATCCTCCATTAATAATAATCTTGCCCCATCCTATGGAGTTGCTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

34.02

Weight (kDa)

7.09

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 608
AccB7I CCANNNNNTGG 1 cut(s) 890
AccII CGCG 2 cut(s) 34, 319
AciI CCGC 3 cut(s) 79, 319, 638
AclWI GGATC 3 cut(s) 517, 803, 852
AcsI RAATTY 1 cut(s) 265
AcuI CTGAAG 2 cut(s) 666, 672
AfaI GTAC 2 cut(s) 335, 812
AfiI CCNNNNNNNGG 2 cut(s) 291, 890
AflII CTTAAG 1 cut(s) 526
AflIII ACRYGT 1 cut(s) 829
AgsI TTSAA 1 cut(s) 46
AjnI CCWGG 3 cut(s) 123, 671, 709
AjuI GAANNNNNNNTTGG 2 cut(s) 817, 849
AleI CACNNNNGTG 1 cut(s) 60
AluBI AGCT 5 cut(s) 135, 419, 443, 506, 650
AluI AGCT 5 cut(s) 135, 419, 443, 506, 650
Alw26I GTCTC 3 cut(s) 30, 99, 123
AlwI GGATC 3 cut(s) 517, 803, 852
AlwNI CAGNNNCTG 2 cut(s) 224, 736
Ama87I CYCGRG 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 764
ApoI RAATTY 1 cut(s) 265
AseI ATTAAT 3 cut(s) 111, 819, 867
Asp700I GAANNNNTTC 1 cut(s) 372
AspLEI GCGC 1 cut(s) 736
AsuHPI GGTGA 2 cut(s) 469, 661
AvaI CYCGRG 1 cut(s) 149
BanII GRGCYC 2 cut(s) 73, 841
BbsI GAAGAC 2 cut(s) 603, 604
BbvI GCAGC 1 cut(s) 776
BccI CCATC 3 cut(s) 742, 785, 892
BceAI ACGGC 2 cut(s) 11, 66
BcgI CGANNNNNNTGC 6 cut(s) 29, 63, 160, 194, 688, 722
BciT130I CCWGG 3 cut(s) 125, 673, 711
BciVI GTATCC 1 cut(s) 626
BclI TGATCA 1 cut(s) 312
BcoDI GTCTC 3 cut(s) 30, 99, 123
BfaI CTAG 2 cut(s) 627, 904
BfmI CTRYAG 2 cut(s) 18, 762
BfoI RGCGCY 1 cut(s) 737
BfrI CTTAAG 1 cut(s) 526
BfuI GTATCC 1 cut(s) 626
BisI GCNGC 1 cut(s) 765
BlsI GCNGC 1 cut(s) 766
Bme1390I CCNGG 3 cut(s) 125, 673, 711
BmeT110I CYCGRG 1 cut(s) 149
BmrFI CCNGG 3 cut(s) 125, 673, 711
BpiI GAAGAC 2 cut(s) 603, 604
BplI GAGNNNNNCTC 1 cut(s) 885
BpmI CTGGAG 3 cut(s) 107, 348, 732
BsaWI WCCGGW 1 cut(s) 775
Bsc4I CCNNNNNNNGG 2 cut(s) 291, 890
Bse1I ACTGG 3 cut(s) 331, 402, 520
BseBI CCWGG 3 cut(s) 125, 673, 711
BseGI GGATG 4 cut(s) 327, 351, 586, 884
BseLI CCNNNNNNNGG 2 cut(s) 291, 890
BseMII CTCAG 3 cut(s) 236, 435, 567
BseNI ACTGG 3 cut(s) 331, 402, 520
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 776
BseYI CCCAGC 1 cut(s) 415
Bsh1236I CGCG 2 cut(s) 34, 319
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 1 cut(s) 776
BslI CCNNNNNNNGG 2 cut(s) 291, 890
BsmAI GTCTC 3 cut(s) 30, 99, 123
BsmBI CGTCTC 1 cut(s) 30
BsmI GAATGC 1 cut(s) 372
BsoBI CYCGRG 1 cut(s) 149
Bsp1286I GDGCHC 2 cut(s) 73, 841
Bsp143I GATC 4 cut(s) 312, 509, 795, 857
BspACI CCGC 3 cut(s) 79, 319, 638
BspCNI CTCAG 3 cut(s) 237, 436, 568
BspFNI CGCG 2 cut(s) 34, 319
BspHI TCATGA 1 cut(s) 129
BspMAI CTGCAG 2 cut(s) 22, 766
BspPI GGATC 3 cut(s) 517, 803, 852
BspTI CTTAAG 1 cut(s) 526
BsrI ACTGG 3 cut(s) 331, 402, 520
BssMI GATC 4 cut(s) 312, 509, 795, 857
Bst2UI CCWGG 3 cut(s) 125, 673, 711
Bst4CI ACNGT 3 cut(s) 220, 365, 610
BstAFI CTTAAG 1 cut(s) 526
BstC8I GCNNGC 5 cut(s) 437, 441, 588, 660, 732
BstDEI CTNAG 4 cut(s) 98, 245, 444, 576
BstF5I GGATG 4 cut(s) 327, 351, 586, 884
BstFNI CGCG 2 cut(s) 34, 319
BstH2I RGCGCY 1 cut(s) 737
BstHHI GCGC 1 cut(s) 736
BstKTI GATC 4 cut(s) 315, 512, 798, 860
BstMAI GTCTC 3 cut(s) 30, 99, 123
BstMBI GATC 4 cut(s) 312, 509, 795, 857
BstMWI GCNNNNNNNGC 2 cut(s) 100, 740
BstNI CCWGG 3 cut(s) 125, 673, 711
BstNSI RCATGY 2 cut(s) 662, 833
BstSCI CCNGG 3 cut(s) 123, 671, 709
BstSFI CTRYAG 2 cut(s) 18, 762
BstUI CGCG 2 cut(s) 34, 319
BstV1I GCAGC 1 cut(s) 776
BstV2I GAAGAC 2 cut(s) 603, 604
BstX2I RGATCY 1 cut(s) 857
BstYI RGATCY 1 cut(s) 857
BsuI GTATCC 1 cut(s) 626
BtsCI GGATG 4 cut(s) 327, 351, 586, 884
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 5 cut(s) 437, 441, 588, 660, 732
CaiI CAGNNNCTG 2 cut(s) 224, 736
CciI TCATGA 1 cut(s) 129
CfoI GCGC 1 cut(s) 736
CseI GACGC 1 cut(s) 40
Csp6I GTAC 2 cut(s) 334, 811
CviAII CATG 6 cut(s) 130, 385, 659, 706, 769, 830
CviQI GTAC 2 cut(s) 334, 811
DdeI CTNAG 4 cut(s) 98, 245, 444, 576
DpnI GATC 4 cut(s) 314, 511, 797, 859
DpnII GATC 4 cut(s) 312, 509, 795, 857
DrdI GACNNNNNNGTC 1 cut(s) 608
DseDI GACNNNNNNGTC 1 cut(s) 608
EciI GGCGGA 1 cut(s) 68
Eco24I GRGCYC 2 cut(s) 73, 841
Eco57I CTGAAG 2 cut(s) 666, 672
Eco88I CYCGRG 1 cut(s) 149
EcoRII CCWGG 3 cut(s) 123, 671, 709
EcoT38I GRGCYC 2 cut(s) 73, 841
Esp3I CGTCTC 1 cut(s) 30
FaeI CATG 6 cut(s) 133, 388, 662, 709, 772, 833
FatI CATG 6 cut(s) 129, 384, 658, 705, 768, 829
FauI CCCGC 1 cut(s) 645
FbaI TGATCA 1 cut(s) 312
Fnu4HI GCNGC 1 cut(s) 765
FokI GGATG 4 cut(s) 334, 338, 593, 871
FriOI GRGCYC 2 cut(s) 73, 841
Fsp4HI GCNGC 1 cut(s) 765
FspBI CTAG 2 cut(s) 627, 904
GlaI GCGC 1 cut(s) 735
GluI GCNGC 1 cut(s) 765
GsaI CCCAGC 1 cut(s) 419
GsuI CTGGAG 3 cut(s) 107, 348, 732
HaeII RGCGCY 1 cut(s) 737
HapII CCGG 1 cut(s) 776
HgaI GACGC 1 cut(s) 40
HhaI GCGC 1 cut(s) 736
Hin1II CATG 6 cut(s) 133, 388, 662, 709, 772, 833
Hin6I GCGC 1 cut(s) 734
HinP1I GCGC 1 cut(s) 734
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HpaII CCGG 1 cut(s) 776
HphI GGTGA 2 cut(s) 469, 661
Hpy166II GTNNAC 3 cut(s) 184, 533, 813
Hpy188I TCNGA 3 cut(s) 246, 577, 646
Hpy188III TCNNGA 5 cut(s) 130, 149, 151, 380, 627
Hpy8I GTNNAC 3 cut(s) 184, 533, 813
HpyAV CCTTC 2 cut(s) 442, 713
HpyCH4III ACNGT 3 cut(s) 220, 365, 610
HpyCH4V TGCA 5 cut(s) 20, 439, 658, 743, 764
HpyF10VI GCNNNNNNNGC 2 cut(s) 100, 740
HpyF3I CTNAG 4 cut(s) 98, 245, 444, 576
Hsp92II CATG 6 cut(s) 133, 388, 662, 709, 772, 833
HspAI GCGC 1 cut(s) 734
Ksp22I TGATCA 1 cut(s) 312
Kzo9I GATC 4 cut(s) 312, 509, 795, 857
Lsp1109I GCAGC 1 cut(s) 776
MaeI CTAG 2 cut(s) 627, 904
MaeIII GTNAC 4 cut(s) 28, 62, 410, 753
MalI GATC 4 cut(s) 314, 511, 797, 859
MboI GATC 4 cut(s) 312, 509, 795, 857
MboII GAAGA 6 cut(s) 3, 199, 368, 400, 604, 608
MflI RGATCY 1 cut(s) 857
MhlI GDGCHC 2 cut(s) 73, 841
MluCI AATT 2 cut(s) 190, 265
MnlI CCTC 8 cut(s) 152, 418, 457, 571, 623, 626, 707, 871
MroXI GAANNNNTTC 1 cut(s) 372
MseI TTAA 6 cut(s) 111, 189, 398, 527, 819, 867
MslI CAYNNNNRTG 2 cut(s) 60, 320
MspCI CTTAAG 1 cut(s) 526
MspI CCGG 1 cut(s) 776
MspR9I CCNGG 3 cut(s) 125, 673, 711
Mva1269I GAATGC 1 cut(s) 372
MvaI CCWGG 3 cut(s) 125, 673, 711
MvnI CGCG 2 cut(s) 34, 319
MwoI GCNNNNNNNGC 2 cut(s) 100, 740
NdeII GATC 4 cut(s) 312, 509, 795, 857
NlaIII CATG 6 cut(s) 133, 388, 662, 709, 772, 833
NmuCI GTSAC 2 cut(s) 28, 62
NspI RCATGY 2 cut(s) 662, 833
OliI CACNNNNGTG 1 cut(s) 60
PaeI GCATGC 1 cut(s) 662
PaeR7I CTCGAG 1 cut(s) 149
PagI TCATGA 1 cut(s) 129
PciI ACATGT 1 cut(s) 829
PctI GAATGC 1 cut(s) 372
PdmI GAANNNNTTC 1 cut(s) 372
PflMI CCANNNNNTGG 1 cut(s) 890
PkrI GCNGC 1 cut(s) 766
PscI ACATGT 1 cut(s) 829
PshBI ATTAAT 3 cut(s) 111, 819, 867
Psp6I CCWGG 3 cut(s) 123, 671, 709
PspFI CCCAGC 1 cut(s) 415
PspGI CCWGG 3 cut(s) 123, 671, 709
PstI CTGCAG 2 cut(s) 22, 766
PstNI CAGNNNCTG 2 cut(s) 224, 736
PsuI RGATCY 1 cut(s) 857
RsaI GTAC 2 cut(s) 335, 812
RsaNI GTAC 2 cut(s) 334, 811
RseI CAYNNNNRTG 2 cut(s) 60, 320
SaqAI TTAA 6 cut(s) 111, 189, 398, 527, 819, 867
SatI GCNGC 1 cut(s) 765
Sau3AI GATC 4 cut(s) 312, 509, 795, 857
ScrFI CCNGG 3 cut(s) 125, 673, 711
SduI GDGCHC 2 cut(s) 73, 841
SfcI CTRYAG 2 cut(s) 18, 762
Sfr274I CTCGAG 1 cut(s) 149
SlaI CTCGAG 1 cut(s) 149
SmiMI CAYNNNNRTG 2 cut(s) 60, 320
SmlI CTYRAG 2 cut(s) 149, 526
SmoI CTYRAG 2 cut(s) 149, 526
SphI GCATGC 1 cut(s) 662
Sse9I AATT 2 cut(s) 190, 265
SsiI CCGC 3 cut(s) 79, 319, 638
SspMI CTAG 2 cut(s) 627, 904
StyD4I CCNGG 3 cut(s) 123, 671, 709
TaaI ACNGT 3 cut(s) 220, 365, 610
TaqI TCGA 3 cut(s) 150, 798, 841
TasI AATT 2 cut(s) 190, 265
TatI WGTACW 1 cut(s) 810
Tru1I TTAA 6 cut(s) 111, 189, 398, 527, 819, 867
Tru9I TTAA 6 cut(s) 111, 189, 398, 527, 819, 867
TscAI CASTG 1 cut(s) 225
TseFI GTSAC 2 cut(s) 28, 62
TseI GCWGC 1 cut(s) 764
Tsp45I GTSAC 2 cut(s) 28, 62
TspDTI ATGAA 4 cut(s) 199, 401, 485, 488
TspRI CASTG 1 cut(s) 225
Van91I CCANNNNNTGG 1 cut(s) 890
Vha464I CTTAAG 1 cut(s) 526
VspI ATTAAT 3 cut(s) 111, 819, 867
XapI RAATTY 1 cut(s) 265
XbaI TCTAGA 1 cut(s) 626
XceI RCATGY 2 cut(s) 662, 833
XhoI CTCGAG 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 372
XspI CTAG 2 cut(s) 627, 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.