Rh5DG342900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000612
Physical Location & Seq
Reverse (-)
46809134 .. 46809823
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG342900.1

Sequence Viewer

Length: 690 bp
ATGGCTTCCTCCTCCTCTTCTTTGTCCCCATTGAAAGTCCGAACCACCAAAGAACAGTTCTACTCTTTCCACAACATTGACCGCAAGCTCTTCACCCGTCTTACATTGCATCTAGGCCGTGACCCGGGCGATTCTGCTCAGATTATGGCCTTTTGGATGTGGCTCGAGCACGGTGGTAAGGTCACCCACTTCATTCACAAAGCCCTTAACACTCTCCCCAACACCCTCCTCCACATCATGGCCGACGAGTCATGCATGGTCCTCAATGTCATTCAAAACGATGAATTTCCGATGGTCTTGGAATCAGATATCATTCCTCACGATATTCCCATTCTCCAAGGAATGACCAAAAGAGGCGTCACCCTCAGATTCTTCCATAAAAACCGCCTCAGCATCATCCGAGGACTCACCTTGTTTTTCAATGACGTGTGCTTGAGAGCCTTTGAGGACTTGTACATTACAGCTGCTCACTGCCAAAACAAGACTATAGATCCTATATCCACCGGAATAGGGTTACACCCAGAGCCGCAAAATTATGCAAGGAGGACGGTTCTAGTCAATAAGTACTACAATCCATTTCTCATTGGAGCTGCGACTTTTGACGCGCCTATGGAAACCATAGGAGACCTCTTCCTCCTCACCCCATGGATGGGGCTGTTGTTAACAGTAATAGTAGTGTTGATCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

26.06

Weight (kDa)

7.18

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 238
AccII CGCG 1 cut(s) 605
AciI CCGC 3 cut(s) 82, 385, 527
AclWI GGATC 2 cut(s) 485, 676
AcoI YGGCCR 1 cut(s) 240
AcsI RAATTY 1 cut(s) 284
AcyI GRCGYC 1 cut(s) 357
AfaI GTAC 2 cut(s) 455, 566
AfiI CCNNNNNNNGG 5 cut(s) 124, 238, 510, 649, 650
AflIII ACRYGT 1 cut(s) 426
AgsI TTSAA 3 cut(s) 34, 275, 421
AjiI CACGTC 1 cut(s) 427
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 3 cut(s) 88, 464, 590
AluI AGCT 3 cut(s) 88, 464, 590
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 618
AlwI GGATC 2 cut(s) 485, 676
Ama87I CYCGRG 2 cut(s) 124, 164
AoxI GGCC 3 cut(s) 115, 147, 240
ApeKI GCWGC 2 cut(s) 464, 590
ApoI RAATTY 1 cut(s) 284
ArsI GACNNNNNNTTYG 2 cut(s) 342, 374
AspLEI GCGC 1 cut(s) 607
AspS9I GGNCC 1 cut(s) 259
AsuC2I CCSGG 2 cut(s) 125, 126
AsuHPI GGTGA 5 cut(s) 85, 175, 352, 400, 631
AvaI CYCGRG 2 cut(s) 124, 164
AvaII GGWCC 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 171
BbvCI CCTCAGC 1 cut(s) 389
BbvI GCAGC 2 cut(s) 451, 577
BccI CCATC 2 cut(s) 286, 643
BceAI ACGGC 1 cut(s) 102
BcnI CCSGG 2 cut(s) 125, 126
BcoDI GTCTC 1 cut(s) 618
BfaI CTAG 2 cut(s) 113, 554
BfmI CTRYAG 1 cut(s) 486
BisI GCNGC 3 cut(s) 465, 527, 591
BlsI GCNGC 3 cut(s) 466, 528, 592
BmcAI AGTACT 1 cut(s) 566
Bme1390I CCNGG 2 cut(s) 125, 126
Bme18I GGWCC 1 cut(s) 259
BmeT110I CYCGRG 2 cut(s) 124, 164
BmgBI CACGTC 1 cut(s) 427
BmgT120I GGNCC 1 cut(s) 259
BmrFI CCNGG 2 cut(s) 125, 126
BmsI GCATC 2 cut(s) 118, 402
Bpu10I CCTNAGC 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 454
BpuMI CCSGG 2 cut(s) 125, 126
BsaHI GRCGYC 1 cut(s) 357
BsaI GGTCTC 1 cut(s) 618
BsaJI CCNNGG 4 cut(s) 124, 337, 400, 644
BsaWI WCCGGW 1 cut(s) 503
Bsc4I CCNNNNNNNGG 5 cut(s) 124, 238, 510, 649, 650
Bse3DI GCAATG 1 cut(s) 104
BseDI CCNNGG 4 cut(s) 124, 337, 400, 644
BseGI GGATG 3 cut(s) 162, 396, 654
BseLI CCNNNNNNNGG 5 cut(s) 124, 238, 510, 649, 650
BseMI GCAATG 1 cut(s) 104
BseMII CTCAG 3 cut(s) 152, 379, 403
BseRI GAGGAG 3 cut(s) 4, 218, 626
BseXI GCAGC 2 cut(s) 451, 577
Bsh1236I CGCG 1 cut(s) 605
BshFI GGCC 3 cut(s) 117, 149, 242
BsiHKAI GWGCWC 1 cut(s) 171
BsiHKCI CYCGRG 2 cut(s) 124, 164
BsiSI CCGG 2 cut(s) 125, 504
BslFI GGGAC 1 cut(s) 10
BslI CCNNNNNNNGG 5 cut(s) 124, 238, 510, 649, 650
BsmAI GTCTC 1 cut(s) 618
BsmFI GGGAC 1 cut(s) 10
BsnI GGCC 3 cut(s) 117, 149, 242
Bso31I GGTCTC 1 cut(s) 618
BsoBI CYCGRG 2 cut(s) 124, 164
Bsp1286I GDGCHC 1 cut(s) 171
Bsp1407I TGTACA 1 cut(s) 453
Bsp143I GATC 2 cut(s) 490, 681
Bsp19I CCATGG 1 cut(s) 644
BspACI CCGC 3 cut(s) 82, 385, 527
BspANI GGCC 3 cut(s) 117, 149, 242
BspCNI CTCAG 3 cut(s) 151, 378, 402
BspFNI CGCG 1 cut(s) 605
BspPI GGATC 2 cut(s) 485, 676
BspQI GCTCTTC 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 618
BsrDI GCAATG 1 cut(s) 104
BsrGI TGTACA 1 cut(s) 453
BssECI CCNNGG 4 cut(s) 124, 337, 400, 644
BssMI GATC 2 cut(s) 490, 681
BssNI GRCGYC 1 cut(s) 357
BssT1I CCWWGG 2 cut(s) 337, 644
Bst4CI ACNGT 4 cut(s) 57, 173, 550, 667
Bst6I CTCTTC 3 cut(s) 22, 95, 635
BstACI GRCGYC 1 cut(s) 357
BstAUI TGTACA 1 cut(s) 453
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 3 cut(s) 138, 365, 389
BstDSI CCRYGG 1 cut(s) 644
BstEII GGTNACC 1 cut(s) 181
BstF5I GGATG 3 cut(s) 162, 396, 654
BstFNI CGCG 1 cut(s) 605
BstHHI GCGC 1 cut(s) 607
BstKTI GATC 2 cut(s) 493, 684
BstMAI GTCTC 1 cut(s) 618
BstMBI GATC 2 cut(s) 490, 681
BstPI GGTNACC 1 cut(s) 181
BstSCI CCNGG 2 cut(s) 123, 124
BstSFI CTRYAG 1 cut(s) 486
BstUI CGCG 1 cut(s) 605
BstV1I GCAGC 2 cut(s) 451, 577
BstX2I RGATCY 1 cut(s) 490
BstYI RGATCY 1 cut(s) 490
BsuRI GGCC 3 cut(s) 117, 149, 242
BtgI CCRYGG 1 cut(s) 644
BtrI CACGTC 1 cut(s) 427
BtsCI GGATG 3 cut(s) 162, 396, 654
BtsI GCAGTG 1 cut(s) 469
BtsIMutI CAGTG 1 cut(s) 469
Cac8I GCNNGC 1 cut(s) 86
CfoI GCGC 1 cut(s) 607
Cfr13I GGNCC 1 cut(s) 259
Cfr9I CCCGGG 1 cut(s) 124
CseI GACGC 2 cut(s) 346, 611
Csp6I GTAC 2 cut(s) 454, 565
CviAII CATG 4 cut(s) 238, 252, 256, 645
CviQI GTAC 2 cut(s) 454, 565
DdeI CTNAG 3 cut(s) 138, 365, 389
DpnI GATC 2 cut(s) 492, 683
DpnII GATC 2 cut(s) 490, 681
EaeI YGGCCR 1 cut(s) 240
Eam1104I CTCTTC 3 cut(s) 22, 95, 635
EarI CTCTTC 3 cut(s) 22, 95, 635
Eco130I CCWWGG 2 cut(s) 337, 644
Eco31I GGTCTC 1 cut(s) 618
Eco32I GATATC 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 259
Eco88I CYCGRG 2 cut(s) 124, 164
Eco91I GGTNACC 1 cut(s) 181
EcoO65I GGTNACC 1 cut(s) 181
EcoRV GATATC 1 cut(s) 310
EcoT14I CCWWGG 2 cut(s) 337, 644
EcoT22I ATGCAT 1 cut(s) 257
ErhI CCWWGG 2 cut(s) 337, 644
FaeI CATG 4 cut(s) 241, 255, 259, 648
FaqI GGGAC 1 cut(s) 10
FatI CATG 4 cut(s) 237, 251, 255, 644
Fnu4HI GCNGC 3 cut(s) 465, 527, 591
FokI GGATG 3 cut(s) 169, 383, 661
Fsp4HI GCNGC 3 cut(s) 465, 527, 591
FspBI CTAG 2 cut(s) 113, 554
GlaI GCGC 1 cut(s) 606
GluI GCNGC 3 cut(s) 465, 527, 591
HaeIII GGCC 3 cut(s) 117, 149, 242
HapII CCGG 2 cut(s) 125, 504
HgaI GACGC 2 cut(s) 346, 611
HhaI GCGC 1 cut(s) 607
Hin1I GRCGYC 1 cut(s) 357
Hin1II CATG 4 cut(s) 241, 255, 259, 648
Hin6I GCGC 1 cut(s) 605
HinP1I GCGC 1 cut(s) 605
HincII GTYRAC 1 cut(s) 663
HindII GTYRAC 1 cut(s) 663
HinfI GANTC 5 cut(s) 131, 248, 302, 369, 405
HpaI GTTAAC 1 cut(s) 663
HpaII CCGG 2 cut(s) 125, 504
HphI GGTGA 5 cut(s) 85, 175, 352, 400, 631
Hpy166II GTNNAC 1 cut(s) 663
Hpy188I TCNGA 6 cut(s) 41, 141, 291, 307, 368, 401
Hpy188III TCNNGA 1 cut(s) 320
Hpy8I GTNNAC 1 cut(s) 663
Hpy99I CGWCG 1 cut(s) 248
HpyCH4III ACNGT 4 cut(s) 57, 173, 550, 667
HpyCH4IV ACGT 1 cut(s) 426
HpyCH4V TGCA 3 cut(s) 109, 255, 539
HpyF3I CTNAG 3 cut(s) 138, 365, 389
HpySE526I ACGT 1 cut(s) 426
Hsp92I GRCGYC 1 cut(s) 357
Hsp92II CATG 4 cut(s) 241, 255, 259, 648
HspAI GCGC 1 cut(s) 605
KspAI GTTAAC 1 cut(s) 663
Kzo9I GATC 2 cut(s) 490, 681
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 1 cut(s) 587
LpnPI CCDG 3 cut(s) 138, 517, 534
Lsp1109I GCAGC 2 cut(s) 451, 577
LweI GCATC 2 cut(s) 118, 402
MaeI CTAG 2 cut(s) 113, 554
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 4 cut(s) 119, 181, 358, 513
MalI GATC 2 cut(s) 492, 683
MboI GATC 2 cut(s) 490, 681
MboII GAAGA 4 cut(s) 9, 82, 364, 622
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 2 cut(s) 284, 532
MlyI GAGTC 2 cut(s) 257, 399
Mph1103I ATGCAT 1 cut(s) 257
MseI TTAA 2 cut(s) 207, 662
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 2 cut(s) 125, 504
MspR9I CCNGG 2 cut(s) 125, 126
MvnI CGCG 1 cut(s) 605
NciI CCSGG 2 cut(s) 125, 126
NcoI CCATGG 1 cut(s) 644
NdeII GATC 2 cut(s) 490, 681
NlaIII CATG 4 cut(s) 241, 255, 259, 648
NmuCI GTSAC 3 cut(s) 119, 181, 358
NsiI ATGCAT 1 cut(s) 257
PaeR7I CTCGAG 1 cut(s) 164
PciSI GCTCTTC 1 cut(s) 95
PfeI GAWTC 3 cut(s) 131, 302, 369
PflMI CCANNNNNTGG 1 cut(s) 238
PkrI GCNGC 3 cut(s) 466, 528, 592
PleI GAGTC 2 cut(s) 256, 399
PpsI GAGTC 2 cut(s) 256, 399
PspEI GGTNACC 1 cut(s) 181
PspPI GGNCC 1 cut(s) 259
PspXI VCTCGAGB 1 cut(s) 164
PsuI RGATCY 1 cut(s) 490
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 2 cut(s) 455, 566
RsaNI GTAC 2 cut(s) 454, 565
SapI GCTCTTC 1 cut(s) 95
SaqAI TTAA 2 cut(s) 207, 662
SatI GCNGC 3 cut(s) 465, 527, 591
Sau3AI GATC 2 cut(s) 490, 681
Sau96I GGNCC 1 cut(s) 259
ScaI AGTACT 1 cut(s) 566
SchI GAGTC 2 cut(s) 257, 399
ScrFI CCNGG 2 cut(s) 125, 126
SduI GDGCHC 1 cut(s) 171
SetI ASST 7 cut(s) 90, 183, 413, 429, 466, 592, 630
SfaNI GCATC 2 cut(s) 118, 402
SfcI CTRYAG 1 cut(s) 486
Sfr274I CTCGAG 1 cut(s) 164
SinI GGWCC 1 cut(s) 259
SlaI CTCGAG 1 cut(s) 164
SmaI CCCGGG 1 cut(s) 126
SmlI CTYRAG 2 cut(s) 164, 433
SmoI CTYRAG 2 cut(s) 164, 433
Sse9I AATT 2 cut(s) 284, 532
SsiI CCGC 3 cut(s) 82, 385, 527
SspMI CTAG 2 cut(s) 113, 554
StyD4I CCNGG 2 cut(s) 123, 124
StyI CCWWGG 2 cut(s) 337, 644
TaaI ACNGT 4 cut(s) 57, 173, 550, 667
TaiI ACGT 1 cut(s) 429
TaqI TCGA 1 cut(s) 165
TasI AATT 2 cut(s) 284, 532
TatI WGTACW 2 cut(s) 453, 564
TauI GCSGC 1 cut(s) 529
TfiI GAWTC 3 cut(s) 131, 302, 369
Tru1I TTAA 2 cut(s) 207, 662
Tru9I TTAA 2 cut(s) 207, 662
TscAI CASTG 1 cut(s) 476
TseFI GTSAC 3 cut(s) 119, 181, 358
TseI GCWGC 2 cut(s) 464, 590
Tsp45I GTSAC 3 cut(s) 119, 181, 358
TspDTI ATGAA 2 cut(s) 181, 297
TspMI CCCGGG 1 cut(s) 124
TspRI CASTG 1 cut(s) 476
Van91I CCANNNNNTGG 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 1 cut(s) 284
XhoI CTCGAG 1 cut(s) 164
XmaI CCCGGG 1 cut(s) 124
XspI CTAG 2 cut(s) 113, 554
ZrmI AGTACT 1 cut(s) 566
Zsp2I ATGCAT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.