Prupe.7G199100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000612
Physical Location & Seq
Forward (+)
18676872 .. 18678331
1460 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G199100.1

Sequence Viewer

Length: 897 bp
ATGGATTCTTATACTTCTTCTCAGTTCGTGTCACAAGAGGGTTTCAAACTGTTTCATTCCATTGACAGAGATTTGTACACCATCTTGGCAATTCACCTCTGCAGGGACCCACTGGAGTCCATGCAGGTCATGGCCCTCTGGCTCTGGTTGGAGAAAGTTGGGTTCAAGAATGCTGTGAAAAAGATCCTATCTTTACCTTTCATTTTGATCAATGAGCTTGCAGATGAGGCAGTGACATGCCTCAACATAATCAATGGCACCCATTTTTCTTTACCATTTGAGGCCAATGACATTCCTCTCCTCCAAAGCTTCATGGAAAAAGAAGTGTCCCTCCAATTTTTCCATGAGAATCAGCAAGCTGCAGCTCAAGGTGTCACCAAAGCTGCCAACATTGTGTGCCTCCCAGCATTTGATGACATTATGAAGCAAGCCATTGAGATAAATTTTTCCCAAAACTCAGCAGATCACAGCCAGGTGATTTTATCATCATCATCTTCTTCATCTTCATCTTCATCTTCATCTTCATCTTCAATTCAACAACAACAGCTACAAGCTTTGCCCCAAATTCTGGTGCCACCAAACGAGAGGACCATGTTTGTGACATTCTCGAAAGGGTACCCAGTACATGAGCATGAAGTGAAGCAATTTTTCACAGCAGCATTTGGGGATTGCGTCGAGTCTCTGCAGATGCAAGAAGTGCAGCCTTTTGAACAATCTCTGTTTGCTCGTGTGGTTTTCCACTCCGCATCAACCATTGAAGCCATACTCAGTGGGGCGAGCAAGGCCAAATTTACAATCAATGGAAAGCATGTGTGGGTCAGAAGATTTGTGCCAAAACGCGCAAGGTCTTTGCTTCCACAAATGCCGTGGCAACCAATTTCCCCTTTTGGGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

33.38

Weight (kDa)

5.98

Isoelectric Point (pI)

62.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 115
Acc65I GGTACC 1 cut(s) 615
AccB1I GGYRCC 3 cut(s) 257, 571, 615
AccB7I CCANNNNNTGG 1 cut(s) 568
AccII CGCG 1 cut(s) 840
AciI CCGC 1 cut(s) 744
AclWI GGATC 1 cut(s) 178
AcsI RAATTY 3 cut(s) 442, 564, 788
AfaI GTAC 3 cut(s) 77, 617, 624
AfiI CCNNNNNNNGG 3 cut(s) 103, 568, 888
AgsI TTSAA 6 cut(s) 46, 166, 531, 536, 710, 758
AjnI CCWGG 1 cut(s) 471
AluBI AGCT 7 cut(s) 217, 309, 359, 365, 383, 547, 554
AluI AGCT 7 cut(s) 217, 309, 359, 365, 383, 547, 554
Alw26I GTCTC 1 cut(s) 684
AlwI GGATC 1 cut(s) 178
AoxI GGCC 4 cut(s) 132, 282, 783, 890
ApeKI GCWGC 5 cut(s) 359, 362, 383, 656, 700
ApoI RAATTY 3 cut(s) 442, 564, 788
Asp718I GGTACC 1 cut(s) 615
AspLEI GCGC 1 cut(s) 842
AspS9I GGNCC 4 cut(s) 106, 133, 588, 890
AsuHPI GGTGA 3 cut(s) 86, 367, 487
AvaII GGWCC 2 cut(s) 106, 588
BanI GGYRCC 3 cut(s) 257, 571, 615
BauI CACGAG 1 cut(s) 726
BbvI GCAGC 5 cut(s) 346, 370, 374, 668, 712
BccI CCATC 1 cut(s) 89
BceAI ACGGC 1 cut(s) 850
BciT130I CCWGG 1 cut(s) 473
BclI TGATCA 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 684
BfmI CTRYAG 3 cut(s) 100, 360, 683
BfuAI ACCTGC 1 cut(s) 115
BisI GCNGC 5 cut(s) 360, 363, 384, 657, 701
BlsI GCNGC 5 cut(s) 361, 364, 385, 658, 702
Bme1390I CCNGG 1 cut(s) 473
Bme18I GGWCC 2 cut(s) 106, 588
BmgT120I GGNCC 4 cut(s) 106, 133, 588, 890
BmiI GGNNCC 5 cut(s) 107, 108, 259, 573, 617
BmrFI CCNGG 1 cut(s) 473
BmrI ACTGGG 1 cut(s) 614
BmsI GCATC 2 cut(s) 678, 755
BmuI ACTGGG 1 cut(s) 614
BpmI CTGGAG 1 cut(s) 134
BpuEI CTTGAG 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 866
Bsc4I CCNNNNNNNGG 3 cut(s) 103, 568, 888
Bse1I ACTGG 2 cut(s) 117, 620
BseBI CCWGG 1 cut(s) 473
BseDI CCNNGG 1 cut(s) 866
BseLI CCNNNNNNNGG 3 cut(s) 103, 568, 888
BseMII CTCAG 3 cut(s) 35, 471, 781
BseNI ACTGG 2 cut(s) 117, 620
BseRI GAGGAG 1 cut(s) 290
BseXI GCAGC 5 cut(s) 346, 370, 374, 668, 712
BseYI CCCAGC 1 cut(s) 403
BsgI GTGCAG 1 cut(s) 719
Bsh1236I CGCG 1 cut(s) 840
BshFI GGCC 4 cut(s) 134, 284, 785, 892
BshNI GGYRCC 3 cut(s) 257, 571, 615
BslFI GGGAC 2 cut(s) 119, 313
BslI CCNNNNNNNGG 3 cut(s) 103, 568, 888
BsmAI GTCTC 1 cut(s) 684
BsmFI GGGAC 2 cut(s) 119, 313
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 4 cut(s) 134, 284, 785, 892
Bsp1407I TGTACA 1 cut(s) 75
Bsp143I GATC 3 cut(s) 183, 207, 463
BspACI CCGC 1 cut(s) 744
BspANI GGCC 4 cut(s) 134, 284, 785, 892
BspCNI CTCAG 3 cut(s) 34, 470, 780
BspFNI CGCG 1 cut(s) 840
BspLI GGNNCC 5 cut(s) 107, 108, 259, 573, 617
BspMAI CTGCAG 3 cut(s) 104, 364, 687
BspMI ACCTGC 1 cut(s) 115
BspPI GGATC 1 cut(s) 178
BspT107I GGYRCC 3 cut(s) 257, 571, 615
BsrGI TGTACA 1 cut(s) 75
BsrI ACTGG 2 cut(s) 117, 620
BssECI CCNNGG 1 cut(s) 866
BssMI GATC 3 cut(s) 183, 207, 463
BssSI CACGAG 1 cut(s) 726
Bst2BI CACGAG 1 cut(s) 726
Bst2UI CCWGG 1 cut(s) 473
Bst4CI ACNGT 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 697
BstAUI TGTACA 1 cut(s) 75
BstC8I GCNNGC 4 cut(s) 219, 357, 429, 778
BstDEI CTNAG 3 cut(s) 21, 457, 767
BstDSI CCRYGG 1 cut(s) 866
BstFNI CGCG 1 cut(s) 840
BstHHI GCGC 1 cut(s) 842
BstKTI GATC 3 cut(s) 186, 210, 466
BstMAI GTCTC 1 cut(s) 684
BstMBI GATC 3 cut(s) 183, 207, 463
BstMWI GCNNNNNNNGC 3 cut(s) 227, 697, 782
BstNI CCWGG 1 cut(s) 473
BstNSI RCATGY 2 cut(s) 240, 812
BstSCI CCNGG 1 cut(s) 471
BstSFI CTRYAG 3 cut(s) 100, 360, 683
BstUI CGCG 1 cut(s) 840
BstV1I GCAGC 5 cut(s) 346, 370, 374, 668, 712
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
BsuRI GGCC 4 cut(s) 134, 284, 785, 892
BtgI CCRYGG 1 cut(s) 866
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 3 cut(s) 110, 237, 775
BveI ACCTGC 1 cut(s) 115
Cac8I GCNNGC 4 cut(s) 219, 357, 429, 778
CfoI GCGC 1 cut(s) 842
Cfr13I GGNCC 4 cut(s) 106, 133, 588, 890
CseI GACGC 1 cut(s) 661
Csp6I GTAC 3 cut(s) 76, 616, 623
CspCI CAANNNNNGTGG 2 cut(s) 848, 883
CviAII CATG 9 cut(s) 121, 130, 237, 313, 344, 592, 626, 632, 809
CviQI GTAC 3 cut(s) 76, 616, 623
DdeI CTNAG 3 cut(s) 21, 457, 767
DpnI GATC 3 cut(s) 185, 209, 465
DpnII GATC 3 cut(s) 183, 207, 463
Eco47I GGWCC 2 cut(s) 106, 588
EcoO109I RGGNCCY 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 471
FaeI CATG 9 cut(s) 124, 133, 240, 316, 347, 595, 629, 635, 812
FaqI GGGAC 2 cut(s) 119, 313
FatI CATG 9 cut(s) 120, 129, 236, 312, 343, 591, 625, 631, 808
FbaI TGATCA 1 cut(s) 207
Fnu4HI GCNGC 5 cut(s) 360, 363, 384, 657, 701
Fsp4HI GCNGC 5 cut(s) 360, 363, 384, 657, 701
GlaI GCGC 1 cut(s) 841
GluI GCNGC 5 cut(s) 360, 363, 384, 657, 701
GsaI CCCAGC 1 cut(s) 407
GsuI CTGGAG 1 cut(s) 134
HaeIII GGCC 4 cut(s) 134, 284, 785, 892
HgaI GACGC 1 cut(s) 661
HhaI GCGC 1 cut(s) 842
Hin1II CATG 9 cut(s) 124, 133, 240, 316, 347, 595, 629, 635, 812
Hin6I GCGC 1 cut(s) 840
HinP1I GCGC 1 cut(s) 840
HindIII AAGCTT 2 cut(s) 307, 552
HinfI GANTC 4 cut(s) 5, 116, 349, 677
HphI GGTGA 3 cut(s) 86, 367, 487
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 821
Hpy188III TCNNGA 2 cut(s) 166, 607
Hpy8I GTNNAC 1 cut(s) 78
Hpy99I CGWCG 1 cut(s) 677
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4V TGCA 7 cut(s) 102, 124, 221, 362, 685, 691, 700
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 697, 782
HpyF3I CTNAG 3 cut(s) 21, 457, 767
Hsp92II CATG 9 cut(s) 124, 133, 240, 316, 347, 595, 629, 635, 812
HspAI GCGC 1 cut(s) 840
KflI GGGWCCC 1 cut(s) 106
KpnI GGTACC 1 cut(s) 619
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 3 cut(s) 183, 207, 463
Lsp1109I GCAGC 5 cut(s) 346, 370, 374, 668, 712
LweI GCATC 2 cut(s) 678, 755
MaeIII GTNAC 4 cut(s) 30, 232, 373, 598
MalI GATC 3 cut(s) 185, 209, 465
MboI GATC 3 cut(s) 183, 207, 463
MboII GAAGA 9 cut(s) 9, 486, 489, 495, 501, 507, 513, 519, 834
MflI RGATCY 1 cut(s) 183
MluCI AATT 8 cut(s) 90, 335, 442, 531, 564, 644, 788, 876
MlyI GAGTC 2 cut(s) 125, 686
MmeI TCCRAC 1 cut(s) 129
MslI CAYNNNNRTG 2 cut(s) 596, 630
MspR9I CCNGG 1 cut(s) 473
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 1 cut(s) 473
MvnI CGCG 1 cut(s) 840
MwoI GCNNNNNNNGC 3 cut(s) 227, 697, 782
NdeII GATC 3 cut(s) 183, 207, 463
NlaIII CATG 9 cut(s) 124, 133, 240, 316, 347, 595, 629, 635, 812
NlaIV GGNNCC 5 cut(s) 107, 108, 259, 573, 617
NmuCI GTSAC 4 cut(s) 30, 232, 373, 598
NspI RCATGY 2 cut(s) 240, 812
PctI GAATGC 1 cut(s) 175
PfeI GAWTC 2 cut(s) 5, 349
PflMI CCANNNNNTGG 1 cut(s) 568
PkrI GCNGC 5 cut(s) 361, 364, 385, 658, 702
PleI GAGTC 2 cut(s) 124, 685
PpsI GAGTC 2 cut(s) 124, 685
PpuMI RGGWCCY 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 471
PspFI CCCAGC 1 cut(s) 403
PspGI CCWGG 1 cut(s) 471
PspN4I GGNNCC 5 cut(s) 107, 108, 259, 573, 617
PspPI GGNCC 4 cut(s) 106, 133, 588, 890
PspPPI RGGWCCY 1 cut(s) 106
PstI CTGCAG 3 cut(s) 104, 364, 687
PsuI RGATCY 1 cut(s) 183
RsaI GTAC 3 cut(s) 77, 617, 624
RsaNI GTAC 3 cut(s) 76, 616, 623
RseI CAYNNNNRTG 2 cut(s) 596, 630
SatI GCNGC 5 cut(s) 360, 363, 384, 657, 701
Sau3AI GATC 3 cut(s) 183, 207, 463
Sau96I GGNCC 4 cut(s) 106, 133, 588, 890
SchI GAGTC 2 cut(s) 125, 686
ScrFI CCNGG 1 cut(s) 473
SfaNI GCATC 2 cut(s) 678, 755
SfcI CTRYAG 3 cut(s) 100, 360, 683
SinI GGWCC 2 cut(s) 106, 588
SmiMI CAYNNNNRTG 2 cut(s) 596, 630
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
Sse9I AATT 8 cut(s) 90, 335, 442, 531, 564, 644, 788, 876
SsiI CCGC 1 cut(s) 744
StyD4I CCNGG 1 cut(s) 471
TaaI ACNGT 1 cut(s) 51
TaqI TCGA 2 cut(s) 608, 675
TasI AATT 8 cut(s) 90, 335, 442, 531, 564, 644, 788, 876
TatI WGTACW 2 cut(s) 75, 622
TfiI GAWTC 2 cut(s) 5, 349
TscAI CASTG 3 cut(s) 117, 237, 775
TseFI GTSAC 4 cut(s) 30, 232, 373, 598
TseI GCWGC 5 cut(s) 359, 362, 383, 656, 700
Tsp45I GTSAC 4 cut(s) 30, 232, 373, 598
TspRI CASTG 3 cut(s) 117, 237, 775
Van91I CCANNNNNTGG 1 cut(s) 568
VpaK11BI GGWCC 2 cut(s) 106, 588
XapI RAATTY 3 cut(s) 442, 564, 788
XceI RCATGY 2 cut(s) 240, 812
XcmI CCANNNNNNNNNTGG 2 cut(s) 127, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.