Rh5DG343300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000612
Physical Location & Seq
Forward (+)
46840768 .. 46841414
647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG343300.1

Sequence Viewer

Length: 410 bp
ATGGAAACCATAGAACCTCTTCCTCCGCACCCCATGGATGGGGCTGTTGTTAACAGTAATAGTAGTGTTGATCCACTAATATGGGACCCTCGTGTGGCGGCTAAGGCAGTGTCTGTGGGGCGGTGGTGTTCGGGGGATCAAGTCGAGGAAGAAGTGTCTGCAGATGATAGGACAATTTTCTTGACATTTTCTAAGGGGTATCCCATTTCTGAAAAGGAAGTGAGAGAGTTCTTTACCAGGAAATATGGGGAATTTTTTGATGCTATCCATATGCAAGAAGTACAAGTAGTGGATCAGCAGCCTTTATATGCCCGCCTTGTGGTTCGTTCCGCTTCTTTTATTCCAGTGGTGCTCGAGGGACAAAGCAAGGCCAAATTTTCTATCAATGGAAAACATGTTTGGGCAAGAAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.34

Weight (kDa)

5.36

Isoelectric Point (pI)

33.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000612)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G49290 AT5G13620
fragaria_vesca FvH4_1g08631 FvH4_2g11491 FvH4_3g26240 FvH4_7g20310 FvH4_7g20310 FvH4_7g20311
malus_domestica MD02G1091200.v1.1 MD07G1180400.v1.1 MD15G1217400.v1.1
prunus_persica Prupe.2G219300_v2.0.a1 Prupe.2G219700_v2.0.a1 Prupe.7G199100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0364241 RchiOBHm_Chr1g0364261 RchiOBHm_Chr2g0094911 RchiOBHm_Chr5g0048831 RchiOBHm_Chr5g0048891 RchiOBHm_Chr5g0048921 RchiOBHm_Chr6g0270221
rosa_laevigata RLG00000013804 RLG00000016530 RLG00000027499 RLG00000027502 RLG00000027503 RLG00000034558
rosa_multiflora Rmu_co8509593.1_g000001 Rmu_sc0002138.1_g000006 Rmu_sc0003628.1_g000024 Rmu_sc0006611.1_g000002 Rmu_sc0011253.1_g000002 Rmu_sc0011664.1_g000001 Rmu_sc0023830.1_g000002 Rmu_sc0023830.1_g000003
rosa_roxburghii Rroxscaffold_1G00033000 Rroxscaffold_2G00146780 Rroxscaffold_4G00292480 Rroxscaffold_4G00292520 Rroxscaffold_4G00292540 Rroxscaffold_7G00198040
rosa_rugosa Rorug01G0315200 Rorug01G0315300.1 Rorug02G0048800 Rorug05G0241300 Rorug06G0053800
rosa_samantha Rh1AG322400 Rh1AG322500 Rh1BG285300 Rh1BG285400 Rh1CG301700 Rh1CG301900 Rh1DG316700 Rh1DG316800 Rh2AG095400 Rh2BG096400 Rh2CG098400 Rh2DG095100 Rh5AG321000 Rh5AG321300 Rh5BG331300 Rh5BG331400 Rh5BG331500 Rh5CG356900 Rh5DG342800 Rh5DG342900 Rh5DG343100 Rh5DG343300 Rh6AG172300 Rh6BG176600 Rh6CG172500 Rh6DG163800
rosa_wichuraiana Rw1G028560 Rw1G028570 Rw2G007180 Rw5G030080 Rw5G030110 Rw5G030290 Rw5G030320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 26, 98, 121, 313, 330
AclWI GGATC 3 cut(s) 65, 144, 300
AcsI RAATTY 2 cut(s) 251, 374
AfaI GTAC 1 cut(s) 282
AfiI CCNNNNNNNGG 4 cut(s) 38, 39, 94, 319
AflIII ACRYGT 1 cut(s) 394
AjnI CCWGG 1 cut(s) 236
AjuI GAANNNNNNNTTGG 1 cut(s) 382
Alw21I GWGCWC 1 cut(s) 354
AlwI GGATC 3 cut(s) 65, 144, 300
AlwNI CAGNNNCTG 1 cut(s) 113
Ama87I CYCGRG 1 cut(s) 353
AoxI GGCC 1 cut(s) 369
ApeKI GCWGC 1 cut(s) 298
ApoI RAATTY 2 cut(s) 251, 374
Asp700I GAANNNNTTC 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 85
AvaI CYCGRG 1 cut(s) 353
AvaII GGWCC 1 cut(s) 85
BauI CACGAG 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 310
BccI CCATC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 238
BciVI GTATCC 1 cut(s) 210
BfmI CTRYAG 1 cut(s) 159
BfuI GTATCC 1 cut(s) 210
BisI GCNGC 2 cut(s) 99, 299
BlsI GCNGC 2 cut(s) 100, 300
Bme1390I CCNGG 1 cut(s) 238
Bme18I GGWCC 1 cut(s) 85
BmeT110I CYCGRG 1 cut(s) 353
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 2 cut(s) 86, 87
BmrFI CCNGG 1 cut(s) 238
BmsI GCATC 1 cut(s) 250
Bpu10I CCTNAGC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 33
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 39, 94, 319
Bse1I ACTGG 1 cut(s) 344
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 4 cut(s) 38, 39, 94, 319
BseNI ACTGG 1 cut(s) 344
BseXI GCAGC 1 cut(s) 310
BshFI GGCC 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 354
BsiHKCI CYCGRG 1 cut(s) 353
BslFI GGGAC 2 cut(s) 98, 372
BslI CCNNNNNNNGG 4 cut(s) 38, 39, 94, 319
BsmFI GGGAC 2 cut(s) 98, 372
BsnI GGCC 1 cut(s) 371
BsoBI CYCGRG 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 3 cut(s) 70, 136, 292
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 5 cut(s) 26, 98, 121, 313, 330
BspANI GGCC 1 cut(s) 371
BspLI GGNNCC 2 cut(s) 86, 87
BspMAI CTGCAG 1 cut(s) 163
BspPI GGATC 3 cut(s) 65, 144, 300
BsrI ACTGG 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 3 cut(s) 70, 136, 292
BssSI CACGAG 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 33
Bst2BI CACGAG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 56
Bst6I CTCTTC 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 2 cut(s) 102, 192
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 43
BstKTI GATC 3 cut(s) 73, 139, 295
BstMBI GATC 3 cut(s) 70, 136, 292
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNI CCWGG 1 cut(s) 238
BstNSI RCATGY 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 236
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 310
BstXI CCANNNNNNTGG 1 cut(s) 81
BsuI GTATCC 1 cut(s) 210
BsuRI GGCC 1 cut(s) 371
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 1 cut(s) 43
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 2 cut(s) 114, 351
Cac8I GCNNGC 1 cut(s) 313
CaiI CAGNNNCTG 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 281
CviAII CATG 2 cut(s) 34, 395
CviJI RGCY 4 cut(s) 44, 101, 301, 371
CviKI_1 RGCY 4 cut(s) 44, 101, 301, 371
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 2 cut(s) 102, 192
DpnI GATC 3 cut(s) 72, 138, 294
DpnII GATC 3 cut(s) 70, 136, 292
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 85
Eco88I CYCGRG 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 2 cut(s) 37, 398
FaiI YATR 9 cut(s) 11, 35, 82, 246, 270, 272, 307, 309, 396
FaqI GGGAC 2 cut(s) 98, 372
FatI CATG 2 cut(s) 33, 394
FauI CCCGC 1 cut(s) 320
FauNDI CATATG 1 cut(s) 270
Fnu4HI GCNGC 2 cut(s) 99, 299
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 2 cut(s) 99, 299
GluI GCNGC 2 cut(s) 99, 299
HaeIII GGCC 1 cut(s) 371
Hin1II CATG 2 cut(s) 37, 398
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HpaI GTTAAC 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 1 cut(s) 181
Hpy8I GTNNAC 1 cut(s) 52
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 2 cut(s) 161, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 2 cut(s) 102, 192
Hsp92II CATG 2 cut(s) 37, 398
KflI GGGWCCC 1 cut(s) 85
KspAI GTTAAC 1 cut(s) 52
Kzo9I GATC 3 cut(s) 70, 136, 292
LpnPI CCDG 3 cut(s) 223, 250, 357
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 1 cut(s) 250
MalI GATC 3 cut(s) 72, 138, 294
MboI GATC 3 cut(s) 70, 136, 292
MboII GAAGA 2 cut(s) 11, 161
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 3 cut(s) 174, 251, 374
MnlI CCTC 5 cut(s) 27, 33, 99, 139, 349
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 1 cut(s) 51
MslI CAYNNNNRTG 1 cut(s) 79
MspR9I CCNGG 1 cut(s) 238
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 1 cut(s) 104
NcoI CCATGG 1 cut(s) 33
NdeI CATATG 1 cut(s) 270
NdeII GATC 3 cut(s) 70, 136, 292
NlaIII CATG 2 cut(s) 37, 398
NlaIV GGNNCC 2 cut(s) 86, 87
NspI RCATGY 1 cut(s) 398
PaeR7I CTCGAG 1 cut(s) 353
PciI ACATGT 1 cut(s) 394
PdmI GAANNNNTTC 1 cut(s) 18
PkrI GCNGC 2 cut(s) 100, 300
PpuMI RGGWCCY 1 cut(s) 85
PscI ACATGT 1 cut(s) 394
Psp5II RGGWCCY 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 236
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 2 cut(s) 86, 87
PspPI GGNCC 1 cut(s) 85
PspPPI RGGWCCY 1 cut(s) 85
PspXI VCTCGAGB 1 cut(s) 353
PstI CTGCAG 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
RseI CAYNNNNRTG 1 cut(s) 79
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 2 cut(s) 99, 299
Sau3AI GATC 3 cut(s) 70, 136, 292
Sau96I GGNCC 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 238
SduI GDGCHC 1 cut(s) 354
SetI ASST 1 cut(s) 19
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 159
Sfr274I CTCGAG 1 cut(s) 353
SinI GGWCC 1 cut(s) 85
SlaI CTCGAG 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 79
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 3 cut(s) 174, 251, 374
SsiI CCGC 5 cut(s) 26, 98, 121, 313, 330
StyD4I CCNGG 1 cut(s) 236
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 56
TaqI TCGA 2 cut(s) 144, 354
TasI AATT 3 cut(s) 174, 251, 374
TatI WGTACW 1 cut(s) 280
TauI GCSGC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 2 cut(s) 114, 351
TseI GCWGC 1 cut(s) 298
TspRI CASTG 2 cut(s) 114, 351
VpaK11BI GGWCC 1 cut(s) 85
XapI RAATTY 2 cut(s) 251, 374
XceI RCATGY 1 cut(s) 398
XhoI CTCGAG 1 cut(s) 353
XmnI GAANNNNTTC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.